Clone BS06506 Report

Search the DGRC for BS06506

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:65
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptMED30-RA
Protein status:BS06506.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06506.3prime Sequence

917 bp (857 high quality bases) assembled on 2005-12-03

> BS06506.3prime
ATGGTCTAGAAAGCTTCTATGAGCGCCGCATGGCCAGCATGGTGTTGATC
TCCCAGATGATGATGCGTGTCCGATCGATGATCTCGCGTAGCTGCCTGTT
CTTCAGCTTGACGGTCTCTATGAGTTCATGGTTCTCCTGCAGGACTTTCC
GGTACTCATCGCACAGCGAGGGCTCGATTCTCGGTTCCGGCTCATCGCGG
TAGGGAATCAGACTCTCGGCGCTCATGTAATCCATTCCGGCGTCGTTGCA
CTTCTCGTAGATGATGCGCACCCTCTTGAAGAGCAGCCGGATGGTGCGGA
AGTACTCCTGCACCTTCTTCTCGGAGCTGTTTTCCCTGTGCGAGGTGGGC
TGGATGCCCTTGAGGGAGGCGAAGACCTCCTGGAAGCGCGAGGCGATATC
CTGCACCGTTTCCTGACCGAGACGGGACAGCTGCACAATGTTAATCTCCT
TGTGAGGATTTTGCTGCGAGATAGCCAGCATATTGTTGCTGCCCCCGGCT
CCACCGGGTGGAATTCCTGCGACCGGATTGAGTTGCTGTTGCTGTTGGGG
AATGTTCTGCTGGGGCATGTTTTGTTGGGGCTGCTGTTGCTGCTGCTGTG
GAACCACTCCCCCTCCGCCCATTCCCACACCACCGCCCATTCCCACTCCG
ACGCCCACTCCTTGTTGGGGCACCATCATTTGCTGCTGCATCATCTGCTG
CTGCTGCTGTTGCTGCATCTGGTGCTGCGGAGACATGCCGGGCATCAGGC
CGCCAGGACCTCCAGGTCCTTGGGGATTCATCTGCATGCTACCCGGGCCG
CCCATCATGCCCATTTGTTGTTGCTGCTGTTGATGTTGAGGCGACATGTG
CATTTGCTGCATATTGCCGTGCTGCATGCCAATCCACCCATCGGCATCAT
GTTGGGGCCCCCGCCTC

BS06506.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG17183-PA 957 MED30-RA 92..957 882..17 4330 100 Minus
CG17183-PA 957 MED30-RA 56..92 917..881 185 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:55:35
Subject Length Description Subject Range Query Range Score Percent Strand
MED30-RA 1103 CG17183-RA 135..1036 917..17 4485 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 653054..653955 17..917 4460 99.9 Plus
Blast to na_te.dros performed 2015-02-12 00:55:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..7112 860..485 159 53.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2674 870..525 144 53.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2369..2682 875..550 132 54.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2601..2958 874..532 132 53.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2742..2947 880..676 125 55.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6793 874..815 119 70.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2795..2852 842..782 117 70.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6710..6882 853..681 117 55.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6802..6846 860..816 108 71.1 Minus

BS06506.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:43:06 Download gff for BS06506.3prime
Subject Subject Range Query Range Percent Splice Strand
MED30-PA 56..957 17..917 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:23:02 Download gff for BS06506.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17183-PA 56..957 17..917 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:49:04 Download gff for BS06506.3prime
Subject Subject Range Query Range Percent Splice Strand
MED30-RA 135..1038 13..917 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:29:26 Download gff for BS06506.3prime
Subject Subject Range Query Range Percent Splice Strand
MED30-RA 135..1038 13..917 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:29:26 Download gff for BS06506.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 653052..653955 13..917 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:49:04 Download gff for BS06506.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 653052..653955 13..917 99   Plus

BS06506.5prime Sequence

887 bp (748 high quality bases) assembled on 2005-12-03

> BS06506.5prime
GAAGTTATCAGTCGACATGTGGAAATACGGTCAAAACCAGGGTAATCAGG
GACCATCGAGCGGCGGCGGAGGAGGCGGGGGCCCCAACATGATGCCGATG
GGTGGATTTGGCATGCAGCACGGCAATATGCAGCAAATGCACATGTCGCC
TCAACATCAACAGCAGCAACAACAAATGGGCATGATGGGCGGCCCGGGTA
GCATGCAGATGAATCCCCAAGGACCTGGAGGTCCTGGCGGCCTGATGCCC
GGCATGTCTCCGCAGCACCAGATGCAGCAACAGCAGCAGCAGCAGATGAT
GCAGCAGCAAATGATGGTGCCCCAACAAGGAGTGGGCGTCGGAGTGGGAA
TGGGCGGTGGTGTGGGAATGGGCGGAGGGGGAGTGGTTCCACAGCAGCAG
CAACAGCAGCCCCAACAAAACATGCCCCAGCAGAACATTCCCCAACAGCA
ACAGCAACTCAATCCGGTCGCAGGAATTCCACCCGGTGGAGCCGGGGGCA
GCAACAATATGCTGGCTATCTCGCAGCAAAATCCTCACAAGGAGATTAAC
ATTGTGCAGCTGTCCCGTCTCGGTCAGGAAACGGTGCAGGATATCGCCTC
GCGCTTCCAGGAGGTCTTCGCCTCCCTCAAGGGCATCCAGCCCACCTCGC
ACAGGGAAAACAGCTCCGAGAAGAAGGTGCAGGAGTACTTCCGCACCATC
CGGCTGCTCTTCAAGAGGGTGCGCATCATCTACGAGAAGTGCAACGACGC
CGGAATGGATTACATGAGCGCCGAGAGTCTGATTCCCTACCGCGATGAGC
CGGAACCGAGAATCGAGCCCTCGCTGTGCGATGAGTACCGGAAAGTCCTG
CAGGAGAACCATGAACTCATAGAGACCGTCAAGCTGA

BS06506.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG17183-PA 957 MED30-RA 1..871 17..887 4355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:31:16
Subject Length Description Subject Range Query Range Score Percent Strand
MED30-RA 1103 CG17183-RA 80..950 17..887 4355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:31:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 653140..654010 887..17 4355 100 Minus
Blast to na_te.dros performed 2015-02-13 08:31:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..7112 130..505 159 53.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2674 120..465 144 53.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2369..2682 115..440 132 54.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2601..2958 116..458 132 53.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2742..2947 110..314 125 55.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6793 116..175 119 70.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2795..2852 148..208 117 70.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6710..6882 137..309 117 55.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6802..6846 130..174 108 71.1 Plus

BS06506.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:43:07 Download gff for BS06506.5prime
Subject Subject Range Query Range Percent Splice Strand
MED30-PA 1..870 17..886 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:23:03 Download gff for BS06506.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17183-PA 1..870 17..886 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:16:39 Download gff for BS06506.5prime
Subject Subject Range Query Range Percent Splice Strand
MED30-RA 80..949 17..886 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:21:06 Download gff for BS06506.5prime
Subject Subject Range Query Range Percent Splice Strand
MED30-RA 80..949 17..886 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:21:06 Download gff for BS06506.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 653141..654010 17..886 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:16:39 Download gff for BS06506.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 653141..654010 17..886 100   Minus

BS06506.complete Sequence

989 bp (989 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635526

> BS06506.complete
GAAGTTATCAGTCGACATGTGGAAATACGGTCAAAACCAGGGTAATCAGG
GACCATCGAGCGGCGGCGGAGGAGGCGGGGGCCCCAACATGATGCCGATG
GGTGGATTTGGCATGCAGCACGGCAATATGCAGCAAATGCACATGTCGCC
TCAACATCAACAGCAGCAACAACAAATGGGCATGATGGGCGGCCCGGGTA
GCATGCAGATGAATCCCCAAGGACCTGGAGGTCCTGGCGGCCTGATGCCC
GGCATGTCTCCGCAGCACCAGATGCAGCAACAGCAGCAGCAGCAGATGAT
GCAGCAGCAAATGATGGTGCCCCAACAAGGAGTGGGCGTCGGAGTGGGAA
TGGGCGGTGGTGTGGGAATGGGCGGAGGGGGAGTGGTTCCACAGCAGCAG
CAACAGCAGCCCCAACAAAACATGCCCCAGCAGAACATTCCCCAACAGCA
ACAGCAACTCAATCCGGTCGCAGGAATTCCACCCGGTGGAGCCGGGGGCA
GCAACAATATGCTGGCTATCTCGCAGCAAAATCCTCACAAGGAGATTAAC
ATTGTGCAGCTGTCCCGTCTCGGTCAGGAAACGGTGCAGGATATCGCCTC
GCGCTTCCAGGAGGTCTTCGCCTCCCTCAAGGGCATCCAGCCCACCTCGC
ACAGGGAAAACAGCTCCGAGAAGAAGGTGCAGGAGTACTTCCGCACCATC
CGGCTGCTCTTCAAGAGGGTGCGCATCATCTACGAGAAGTGCAACGACGC
CGGAATGGATTACATGAGCGCCGAGAGTCTGATTCCCTACCGCGATGAGC
CGGAACCGAGAATCGAGCCCTCGCTGTGCGATGAGTACCGGAAAGTCCTG
CAGGAGAACCATGAACTCATAGAGACCGTCAAGCTGAAGAACAGGCAGCT
ACGCGAGATCATCGATCGGACACGCATCATCATCTGGGAGATCAACACCA
TGCTGGCCATGCGGCGCTCATAGAAGCTTTCTAGACCAT

BS06506.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
MED30-RA 957 CG17183-PA 1..957 17..973 4785 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
MED30-RA 1103 CG17183-RA 80..1036 17..973 4785 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:37:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 653054..654010 973..17 4785 100 Minus
Blast to na_te.dros performed 2014-11-27 13:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..7112 130..505 159 53.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2674 120..465 144 53.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2369..2682 115..440 132 54.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2601..2958 116..458 132 53.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2742..2947 110..314 125 55.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6793 116..175 119 70.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6710..6882 137..309 117 55.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2795..2852 148..208 117 70.5 Plus

BS06506.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:37 Download gff for BS06506.complete
Subject Subject Range Query Range Percent Splice Strand
MED30-RA 1..957 17..973 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:54 Download gff for BS06506.complete
Subject Subject Range Query Range Percent Splice Strand
MED30-RA 189..1147 17..977 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:12 Download gff for BS06506.complete
Subject Subject Range Query Range Percent Splice Strand
MED30-RA 80..1036 17..973 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:37 Download gff for BS06506.complete
Subject Subject Range Query Range Percent Splice Strand
MED30-RA 189..1147 17..977 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:56 Download gff for BS06506.complete
Subject Subject Range Query Range Percent Splice Strand
MED30-RA 80..1036 17..973 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:56 Download gff for BS06506.complete
Subject Subject Range Query Range Percent Splice Strand
3L 653054..654010 17..973 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:12 Download gff for BS06506.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 653054..654010 17..973 100   Minus

BS06506.pep Sequence

Translation from 16 to 972

> BS06506.pep
MWKYGQNQGNQGPSSGGGGGGGPNMMPMGGFGMQHGNMQQMHMSPQHQQQ
QQQMGMMGGPGSMQMNPQGPGGPGGLMPGMSPQHQMQQQQQQQMMQQQMM
VPQQGVGVGVGMGGGVGMGGGGVVPQQQQQQPQQNMPQQNIPQQQQQLNP
VAGIPPGGAGGSNNMLAISQQNPHKEINIVQLSRLGQETVQDIASRFQEV
FASLKGIQPTSHRENSSEKKVQEYFRTIRLLFKRVRIIYEKCNDAGMDYM
SAESLIPYRDEPEPRIEPSLCDEYRKVLQENHELIETVKLKNRQLREIID
RTRIIIWEINTMLAMRRS*

BS06506.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:31
Subject Length Description Subject Range Query Range Score Percent Strand
MED30-PA 318 CG17183-PA 1..318 1..318 1689 100 Plus
mam-PD 1594 CG8118-PD 574..756 5..188 199 36.9 Plus
mam-PB 1594 CG8118-PB 574..756 5..188 199 36.9 Plus
mam-PA 1594 CG8118-PA 574..756 5..188 199 36.9 Plus
kto-PB 534 CG8491-PB 324..532 6..150 197 35.4 Plus
mam-PD 1594 CG8118-PD 1113..1300 12..161 175 36.2 Plus
mam-PB 1594 CG8118-PB 1113..1300 12..161 175 36.2 Plus
mam-PA 1594 CG8118-PA 1113..1300 12..161 175 36.2 Plus
mam-PD 1594 CG8118-PD 872..1032 9..149 170 35.8 Plus
mam-PB 1594 CG8118-PB 872..1032 9..149 170 35.8 Plus
mam-PA 1594 CG8118-PA 872..1032 9..149 170 35.8 Plus