Clone Sequence Records
BS06506.3prime Sequence
917 bp (857 high quality bases) assembled on 2005-12-03
> BS06506.3prime
ATGGTCTAGAAAGCTTCTATGAGCGCCGCATGGCCAGCATGGTGTTGATC
TCCCAGATGATGATGCGTGTCCGATCGATGATCTCGCGTAGCTGCCTGTT
CTTCAGCTTGACGGTCTCTATGAGTTCATGGTTCTCCTGCAGGACTTTCC
GGTACTCATCGCACAGCGAGGGCTCGATTCTCGGTTCCGGCTCATCGCGG
TAGGGAATCAGACTCTCGGCGCTCATGTAATCCATTCCGGCGTCGTTGCA
CTTCTCGTAGATGATGCGCACCCTCTTGAAGAGCAGCCGGATGGTGCGGA
AGTACTCCTGCACCTTCTTCTCGGAGCTGTTTTCCCTGTGCGAGGTGGGC
TGGATGCCCTTGAGGGAGGCGAAGACCTCCTGGAAGCGCGAGGCGATATC
CTGCACCGTTTCCTGACCGAGACGGGACAGCTGCACAATGTTAATCTCCT
TGTGAGGATTTTGCTGCGAGATAGCCAGCATATTGTTGCTGCCCCCGGCT
CCACCGGGTGGAATTCCTGCGACCGGATTGAGTTGCTGTTGCTGTTGGGG
AATGTTCTGCTGGGGCATGTTTTGTTGGGGCTGCTGTTGCTGCTGCTGTG
GAACCACTCCCCCTCCGCCCATTCCCACACCACCGCCCATTCCCACTCCG
ACGCCCACTCCTTGTTGGGGCACCATCATTTGCTGCTGCATCATCTGCTG
CTGCTGCTGTTGCTGCATCTGGTGCTGCGGAGACATGCCGGGCATCAGGC
CGCCAGGACCTCCAGGTCCTTGGGGATTCATCTGCATGCTACCCGGGCCG
CCCATCATGCCCATTTGTTGTTGCTGCTGTTGATGTTGAGGCGACATGTG
CATTTGCTGCATATTGCCGTGCTGCATGCCAATCCACCCATCGGCATCAT
GTTGGGGCCCCCGCCTC
BS06506.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17183-PA | 957 | MED30-RA | 92..957 | 882..17 | 4330 | 100 | Minus |
CG17183-PA | 957 | MED30-RA | 56..92 | 917..881 | 185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:55:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED30-RA | 1103 | CG17183-RA | 135..1036 | 917..17 | 4485 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:55:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 653054..653955 | 17..917 | 4460 | 99.9 | Plus |
Blast to na_te.dros performed 2015-02-12 00:55:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..7112 | 860..485 | 159 | 53.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2345..2674 | 870..525 | 144 | 53.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2369..2682 | 875..550 | 132 | 54.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2601..2958 | 874..532 | 132 | 53.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2742..2947 | 880..676 | 125 | 55.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6793 | 874..815 | 119 | 70.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2795..2852 | 842..782 | 117 | 70.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6710..6882 | 853..681 | 117 | 55.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6802..6846 | 860..816 | 108 | 71.1 | Minus |
BS06506.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:43:06 Download gff for
BS06506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED30-PA | 56..957 | 17..917 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:23:02 Download gff for
BS06506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17183-PA | 56..957 | 17..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:49:04 Download gff for
BS06506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED30-RA | 135..1038 | 13..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:29:26 Download gff for
BS06506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED30-RA | 135..1038 | 13..917 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:29:26 Download gff for
BS06506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 653052..653955 | 13..917 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:49:04 Download gff for
BS06506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 653052..653955 | 13..917 | 99 | | Plus |
BS06506.5prime Sequence
887 bp (748 high quality bases) assembled on 2005-12-03
> BS06506.5prime
GAAGTTATCAGTCGACATGTGGAAATACGGTCAAAACCAGGGTAATCAGG
GACCATCGAGCGGCGGCGGAGGAGGCGGGGGCCCCAACATGATGCCGATG
GGTGGATTTGGCATGCAGCACGGCAATATGCAGCAAATGCACATGTCGCC
TCAACATCAACAGCAGCAACAACAAATGGGCATGATGGGCGGCCCGGGTA
GCATGCAGATGAATCCCCAAGGACCTGGAGGTCCTGGCGGCCTGATGCCC
GGCATGTCTCCGCAGCACCAGATGCAGCAACAGCAGCAGCAGCAGATGAT
GCAGCAGCAAATGATGGTGCCCCAACAAGGAGTGGGCGTCGGAGTGGGAA
TGGGCGGTGGTGTGGGAATGGGCGGAGGGGGAGTGGTTCCACAGCAGCAG
CAACAGCAGCCCCAACAAAACATGCCCCAGCAGAACATTCCCCAACAGCA
ACAGCAACTCAATCCGGTCGCAGGAATTCCACCCGGTGGAGCCGGGGGCA
GCAACAATATGCTGGCTATCTCGCAGCAAAATCCTCACAAGGAGATTAAC
ATTGTGCAGCTGTCCCGTCTCGGTCAGGAAACGGTGCAGGATATCGCCTC
GCGCTTCCAGGAGGTCTTCGCCTCCCTCAAGGGCATCCAGCCCACCTCGC
ACAGGGAAAACAGCTCCGAGAAGAAGGTGCAGGAGTACTTCCGCACCATC
CGGCTGCTCTTCAAGAGGGTGCGCATCATCTACGAGAAGTGCAACGACGC
CGGAATGGATTACATGAGCGCCGAGAGTCTGATTCCCTACCGCGATGAGC
CGGAACCGAGAATCGAGCCCTCGCTGTGCGATGAGTACCGGAAAGTCCTG
CAGGAGAACCATGAACTCATAGAGACCGTCAAGCTGA
BS06506.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17183-PA | 957 | MED30-RA | 1..871 | 17..887 | 4355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:31:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED30-RA | 1103 | CG17183-RA | 80..950 | 17..887 | 4355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:31:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 653140..654010 | 887..17 | 4355 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 08:31:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..7112 | 130..505 | 159 | 53.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2345..2674 | 120..465 | 144 | 53.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2369..2682 | 115..440 | 132 | 54.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2601..2958 | 116..458 | 132 | 53.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2742..2947 | 110..314 | 125 | 55.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6793 | 116..175 | 119 | 70.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2795..2852 | 148..208 | 117 | 70.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6710..6882 | 137..309 | 117 | 55.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6802..6846 | 130..174 | 108 | 71.1 | Plus |
BS06506.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:43:07 Download gff for
BS06506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED30-PA | 1..870 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:23:03 Download gff for
BS06506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17183-PA | 1..870 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:16:39 Download gff for
BS06506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED30-RA | 80..949 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:21:06 Download gff for
BS06506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED30-RA | 80..949 | 17..886 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:21:06 Download gff for
BS06506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 653141..654010 | 17..886 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:16:39 Download gff for
BS06506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 653141..654010 | 17..886 | 100 | | Minus |
BS06506.complete Sequence
989 bp (989 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635526
> BS06506.complete
GAAGTTATCAGTCGACATGTGGAAATACGGTCAAAACCAGGGTAATCAGG
GACCATCGAGCGGCGGCGGAGGAGGCGGGGGCCCCAACATGATGCCGATG
GGTGGATTTGGCATGCAGCACGGCAATATGCAGCAAATGCACATGTCGCC
TCAACATCAACAGCAGCAACAACAAATGGGCATGATGGGCGGCCCGGGTA
GCATGCAGATGAATCCCCAAGGACCTGGAGGTCCTGGCGGCCTGATGCCC
GGCATGTCTCCGCAGCACCAGATGCAGCAACAGCAGCAGCAGCAGATGAT
GCAGCAGCAAATGATGGTGCCCCAACAAGGAGTGGGCGTCGGAGTGGGAA
TGGGCGGTGGTGTGGGAATGGGCGGAGGGGGAGTGGTTCCACAGCAGCAG
CAACAGCAGCCCCAACAAAACATGCCCCAGCAGAACATTCCCCAACAGCA
ACAGCAACTCAATCCGGTCGCAGGAATTCCACCCGGTGGAGCCGGGGGCA
GCAACAATATGCTGGCTATCTCGCAGCAAAATCCTCACAAGGAGATTAAC
ATTGTGCAGCTGTCCCGTCTCGGTCAGGAAACGGTGCAGGATATCGCCTC
GCGCTTCCAGGAGGTCTTCGCCTCCCTCAAGGGCATCCAGCCCACCTCGC
ACAGGGAAAACAGCTCCGAGAAGAAGGTGCAGGAGTACTTCCGCACCATC
CGGCTGCTCTTCAAGAGGGTGCGCATCATCTACGAGAAGTGCAACGACGC
CGGAATGGATTACATGAGCGCCGAGAGTCTGATTCCCTACCGCGATGAGC
CGGAACCGAGAATCGAGCCCTCGCTGTGCGATGAGTACCGGAAAGTCCTG
CAGGAGAACCATGAACTCATAGAGACCGTCAAGCTGAAGAACAGGCAGCT
ACGCGAGATCATCGATCGGACACGCATCATCATCTGGGAGATCAACACCA
TGCTGGCCATGCGGCGCTCATAGAAGCTTTCTAGACCAT
BS06506.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:37:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED30-RA | 957 | CG17183-PA | 1..957 | 17..973 | 4785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED30-RA | 1103 | CG17183-RA | 80..1036 | 17..973 | 4785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:37:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 653054..654010 | 973..17 | 4785 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 13:37:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..7112 | 130..505 | 159 | 53.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2345..2674 | 120..465 | 144 | 53.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2369..2682 | 115..440 | 132 | 54.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2601..2958 | 116..458 | 132 | 53.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2742..2947 | 110..314 | 125 | 55.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6793 | 116..175 | 119 | 70.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6710..6882 | 137..309 | 117 | 55.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2795..2852 | 148..208 | 117 | 70.5 | Plus |
BS06506.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:37 Download gff for
BS06506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED30-RA | 1..957 | 17..973 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:54 Download gff for
BS06506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED30-RA | 189..1147 | 17..977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:12 Download gff for
BS06506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED30-RA | 80..1036 | 17..973 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:37 Download gff for
BS06506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED30-RA | 189..1147 | 17..977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:56 Download gff for
BS06506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED30-RA | 80..1036 | 17..973 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:56 Download gff for
BS06506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 653054..654010 | 17..973 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:12 Download gff for
BS06506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 653054..654010 | 17..973 | 100 | | Minus |
BS06506.pep Sequence
Translation from 16 to 972
> BS06506.pep
MWKYGQNQGNQGPSSGGGGGGGPNMMPMGGFGMQHGNMQQMHMSPQHQQQ
QQQMGMMGGPGSMQMNPQGPGGPGGLMPGMSPQHQMQQQQQQQMMQQQMM
VPQQGVGVGVGMGGGVGMGGGGVVPQQQQQQPQQNMPQQNIPQQQQQLNP
VAGIPPGGAGGSNNMLAISQQNPHKEINIVQLSRLGQETVQDIASRFQEV
FASLKGIQPTSHRENSSEKKVQEYFRTIRLLFKRVRIIYEKCNDAGMDYM
SAESLIPYRDEPEPRIEPSLCDEYRKVLQENHELIETVKLKNRQLREIID
RTRIIIWEINTMLAMRRS*
BS06506.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED30-PA | 318 | CG17183-PA | 1..318 | 1..318 | 1689 | 100 | Plus |
mam-PD | 1594 | CG8118-PD | 574..756 | 5..188 | 199 | 36.9 | Plus |
mam-PB | 1594 | CG8118-PB | 574..756 | 5..188 | 199 | 36.9 | Plus |
mam-PA | 1594 | CG8118-PA | 574..756 | 5..188 | 199 | 36.9 | Plus |
kto-PB | 534 | CG8491-PB | 324..532 | 6..150 | 197 | 35.4 | Plus |
mam-PD | 1594 | CG8118-PD | 1113..1300 | 12..161 | 175 | 36.2 | Plus |
mam-PB | 1594 | CG8118-PB | 1113..1300 | 12..161 | 175 | 36.2 | Plus |
mam-PA | 1594 | CG8118-PA | 1113..1300 | 12..161 | 175 | 36.2 | Plus |
mam-PD | 1594 | CG8118-PD | 872..1032 | 9..149 | 170 | 35.8 | Plus |
mam-PB | 1594 | CG8118-PB | 872..1032 | 9..149 | 170 | 35.8 | Plus |
mam-PA | 1594 | CG8118-PA | 872..1032 | 9..149 | 170 | 35.8 | Plus |