Clone Sequence Records
BS06513.3prime Sequence
825 bp (824 high quality bases) assembled on 2005-12-03
> BS06513.3prime
ATGGTCTAGAAAGCTTCTAGCGCGGACACATGACCTGCTTGCCACCGTCC
ACAGGAAGGGTCACGCCGGTCACGAAGCTGGCCAGCTCGCTGGCCAGGAA
GCAAATGGCGGCCGCCACCTCCTTTGGCTCCCCAATCCGGCCCAGGGCGT
GGGTCTTCTTCGAGTGCTCCAGAAATTCGGCGTAGCTCTGCTCGTCCATG
CCCCCCGCCTTTTGCAGATTGGTGCGAATCACACCCGGATTGACCGCATT
CACCCGAACACCCTGGGGACCCAGATCCAGGGCAAGGGAGCGGGTAAACT
GGTCCACCGCCGCCTTGGACATGTTGTAGGCCACCAGATTGGGAAAAGCG
CGAAGTCCGCAGACGCTGGACACGTTGACAATGCTGCCCTTACACTGCAG
CAACTGGGGCAGCAGCAACTTGGTCAGATAAAACCCAGAACGCACATTGG
CCTCCATCACGTGGGTGAAGCAGGCCAGTTCCGTGCTCTGCAGCGTTCCC
GTGGGCATGATGCCAGCCCCATTTACCAGCACATCCAGCTTGCCCTCGTA
GCGCTCCGTGGTCTTCCGCGCAATGCATTCGATCTCCGGAGGCTTGAGCA
GATCTCCGGCTATGCCGTACGGCTCGTGGCCCATCTTCATGCAGCGTTTC
ATCACACATATGAGGCCCTCCTCCTCCCGATCCACCAGGGCCAGGCAGGC
ACCCAGCTTCGAGAACATCTCCGCCGCGGCGGCCCCGATCCCGGAGGCTG
CGCCCGTGATAAGCACCACTTTGCCGGAGAAGTCCAGACCAGCCTTGCCC
TTGCTGCCCATGTCGACTGATAACT
BS06513.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31546-PA | 795 | CG31546-RA | 1..795 | 811..17 | 3975 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:09:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31546-RA | 999 | CG31546-RA | 63..857 | 811..17 | 3975 | 100 | Minus |
CG31549-RB | 991 | CG31549-RB | 465..782 | 391..74 | 390 | 75.6 | Minus |
CG31549-RA | 1130 | CG31549-RA | 604..921 | 391..74 | 390 | 75.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:09:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5634768..5635562 | 17..811 | 3975 | 100 | Plus |
3R | 32079331 | 3R | 5632795..5633112 | 391..74 | 390 | 74.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:09:42 has no hits.
BS06513.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:43:20 Download gff for
BS06513.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31546-PA | 1..795 | 17..811 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:23:22 Download gff for
BS06513.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31546-PA | 1..795 | 17..811 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:14:44 Download gff for
BS06513.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31546-RA | 53..860 | 12..823 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:29:44 Download gff for
BS06513.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31546-RA | 53..860 | 12..823 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:29:44 Download gff for
BS06513.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5634763..5635572 | 12..823 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:14:44 Download gff for
BS06513.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1460485..1461294 | 12..823 | 99 | | Plus |
BS06513.5prime Sequence
825 bp (824 high quality bases) assembled on 2005-12-03
> BS06513.5prime
GAAGTTATCAGTCGACATGGGCAGCAAGGGCAAGGCTGGTCTGGACTTCT
CCGGCAAAGTGGTGCTTATCACGGGCGCAGCCTCCGGGATCGGGGCCGCC
GCGGCGGAGATGTTCTCGAAGCTGGGTGCCTGCCTGGCCCTGGTGGATCG
GGAGGAGGAGGGCCTCATATGTGTGATGAAACGCTGCATGAAGATGGGCC
ACGAGCCGTACGGCATAGCCGGAGATCTGCTCAAGCCTCCGGAGATCGAA
TGCATTGCGCGGAAGACCACGGAGCGCTACGAGGGCAAGCTGGATGTGCT
GGTAAATGGGGCTGGCATCATGCCCACGGGAACGCTGCAGAGCACGGAAC
TGGCCTGCTTCACCCACGTGATGGAGGCCAATGTGCGTTCTGGGTTTTAT
CTGACCAAGTTGCTGCTGCCCCAGTTGCTGCAGTGTAAGGGCAGCATTGT
CAACGTGTCCAGCGTCTGCGGACTTCGCGCTTTTCCCAATCTGGTGGCCT
ACAACATGTCCAAGGCGGCGGTGGACCAGTTTACCCGCTCCCTTGCCCTG
GATCTGGGTCCCCAGGGTGTTCGGGTGAATGCGGTCAATCCGGGTGTGAT
TCGCACCAATCTGCAAAAGGCGGGGGGCATGGACGAGCAGAGCTACGCCG
AATTTCTGGAGCACTCGAAGAAGACCCACGCCCTGGGCCGGATTGGGGAG
CCAAAGGAGGTGGCGGCCGCCATTTGCTTCCTGGCCAGCGAGCTGGCCAG
CTTCGTGACCGGCGTGACCCTTCCTGTGGACGGTGGCAAGCAGGTCATGT
GTCCGCGCTAGAAGCTTTCTAGACC
BS06513.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31546-PA | 795 | CG31546-RA | 1..795 | 17..811 | 3975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:46:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31546-RA | 999 | CG31546-RA | 63..857 | 17..811 | 3975 | 100 | Plus |
CG31549-RB | 991 | CG31549-RB | 465..782 | 437..754 | 390 | 75.6 | Plus |
CG31549-RA | 1130 | CG31549-RA | 604..921 | 437..754 | 390 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:46:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5634768..5635562 | 811..17 | 3975 | 100 | Minus |
3R | 32079331 | 3R | 5632795..5633112 | 437..754 | 390 | 74.8 | Plus |
Blast to na_te.dros performed on 2015-02-09 22:46:27 has no hits.
BS06513.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:43:21 Download gff for
BS06513.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31546-PA | 1..795 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:23:22 Download gff for
BS06513.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31546-PA | 1..795 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:27:51 Download gff for
BS06513.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31546-RA | 53..860 | 5..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:48:30 Download gff for
BS06513.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31546-RA | 53..860 | 5..816 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:48:30 Download gff for
BS06513.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5634763..5635572 | 5..816 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:27:51 Download gff for
BS06513.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1460485..1461294 | 5..816 | 99 | | Minus |
BS06513.complete Sequence
827 bp (827 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635527
> BS06513.complete
GAAGTTATCAGTCGACATGGGCAGCAAGGGCAAGGCTGGTCTGGACTTCT
CCGGCAAAGTGGTGCTTATCACGGGCGCAGCCTCCGGGATCGGGGCCGCC
GCGGCGGAGATGTTCTCGAAGCTGGGTGCCTGCCTGGCCCTGGTGGATCG
GGAGGAGGAGGGCCTCATATGTGTGATGAAACGCTGCATGAAGATGGGCC
ACGAGCCGTACGGCATAGCCGGAGATCTGCTCAAGCCTCCGGAGATCGAA
TGCATTGCGCGGAAGACCACGGAGCGCTACGAGGGCAAGCTGGATGTGCT
GGTAAATGGGGCTGGCATCATGCCCACGGGAACGCTGCAGAGCACGGAAC
TGGCCTGCTTCACCCACGTGATGGAGGCCAATGTGCGTTCTGGGTTTTAT
CTGACCAAGTTGCTGCTGCCCCAGTTGCTGCAGTGTAAGGGCAGCATTGT
CAACGTGTCCAGCGTCTGCGGACTTCGCGCTTTTCCCAATCTGGTGGCCT
ACAACATGTCCAAGGCGGCGGTGGACCAGTTTACCCGCTCCCTTGCCCTG
GATCTGGGTCCCCAGGGTGTTCGGGTGAATGCGGTCAATCCGGGTGTGAT
TCGCACCAATCTGCAAAAGGCGGGGGGCATGGACGAGCAGAGCTACGCCG
AATTTCTGGAGCACTCGAAGAAGACCCACGCCCTGGGCCGGATTGGGGAG
CCAAAGGAGGTGGCGGCCGCCATTTGCTTCCTGGCCAGCGAGCTGGCCAG
CTTCGTGACCGGCGTGACCCTTCCTGTGGACGGTGGCAAGCAGGTCATGT
GTCCGCGCTAGAAGCTTTCTAGACCAT
BS06513.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:08:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31546-RA | 795 | CG31546-PA | 1..795 | 17..811 | 3975 | 100 | Plus |
CG31549-RB | 774 | CG31549-PB | 400..717 | 437..754 | 390 | 74.8 | Plus |
CG31549-RA | 774 | CG31549-PA | 400..717 | 437..754 | 390 | 74.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:08:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31546-RA | 999 | CG31546-RA | 63..857 | 17..811 | 3975 | 100 | Plus |
CG31549-RB | 991 | CG31549-RB | 465..782 | 437..754 | 390 | 74.8 | Plus |
CG31549-RA | 1130 | CG31549-RA | 604..921 | 437..754 | 390 | 74.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:08:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5634768..5635562 | 811..17 | 3975 | 100 | Minus |
3R | 32079331 | 3R | 5632795..5633112 | 437..754 | 390 | 74.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:08:45 has no hits.
BS06513.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:39 Download gff for
BS06513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31546-RA | 1..795 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:56 Download gff for
BS06513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31546-RA | 53..860 | 5..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:53:22 Download gff for
BS06513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31546-RA | 63..857 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:39 Download gff for
BS06513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31546-RA | 53..860 | 5..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:15 Download gff for
BS06513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31546-RA | 63..857 | 17..811 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:15 Download gff for
BS06513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5634768..5635562 | 17..811 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:53:22 Download gff for
BS06513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1460490..1461284 | 17..811 | 100 | | Minus |
BS06513.pep Sequence
Translation from 16 to 810
> BS06513.pep
MGSKGKAGLDFSGKVVLITGAASGIGAAAAEMFSKLGACLALVDREEEGL
ICVMKRCMKMGHEPYGIAGDLLKPPEIECIARKTTERYEGKLDVLVNGAG
IMPTGTLQSTELACFTHVMEANVRSGFYLTKLLLPQLLQCKGSIVNVSSV
CGLRAFPNLVAYNMSKAAVDQFTRSLALDLGPQGVRVNAVNPGVIRTNLQ
KAGGMDEQSYAEFLEHSKKTHALGRIGEPKEVAAAICFLASELASFVTGV
TLPVDGGKQVMCPR*
BS06513.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31546-PA | 264 | CG31546-PA | 1..264 | 1..264 | 1349 | 100 | Plus |
CG31548-PA | 256 | CG31548-PA | 1..256 | 9..264 | 716 | 57.6 | Plus |
CG31549-PB | 257 | CG31549-PB | 4..257 | 11..264 | 706 | 56.5 | Plus |
CG31549-PA | 257 | CG31549-PA | 4..257 | 11..264 | 706 | 56.5 | Plus |
CG12171-PA | 257 | CG12171-PA | 4..257 | 11..264 | 672 | 52.9 | Plus |