Clone BS06513 Report

Search the DGRC for BS06513

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:65
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG31546-RA
Protein status:BS06513.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06513.3prime Sequence

825 bp (824 high quality bases) assembled on 2005-12-03

> BS06513.3prime
ATGGTCTAGAAAGCTTCTAGCGCGGACACATGACCTGCTTGCCACCGTCC
ACAGGAAGGGTCACGCCGGTCACGAAGCTGGCCAGCTCGCTGGCCAGGAA
GCAAATGGCGGCCGCCACCTCCTTTGGCTCCCCAATCCGGCCCAGGGCGT
GGGTCTTCTTCGAGTGCTCCAGAAATTCGGCGTAGCTCTGCTCGTCCATG
CCCCCCGCCTTTTGCAGATTGGTGCGAATCACACCCGGATTGACCGCATT
CACCCGAACACCCTGGGGACCCAGATCCAGGGCAAGGGAGCGGGTAAACT
GGTCCACCGCCGCCTTGGACATGTTGTAGGCCACCAGATTGGGAAAAGCG
CGAAGTCCGCAGACGCTGGACACGTTGACAATGCTGCCCTTACACTGCAG
CAACTGGGGCAGCAGCAACTTGGTCAGATAAAACCCAGAACGCACATTGG
CCTCCATCACGTGGGTGAAGCAGGCCAGTTCCGTGCTCTGCAGCGTTCCC
GTGGGCATGATGCCAGCCCCATTTACCAGCACATCCAGCTTGCCCTCGTA
GCGCTCCGTGGTCTTCCGCGCAATGCATTCGATCTCCGGAGGCTTGAGCA
GATCTCCGGCTATGCCGTACGGCTCGTGGCCCATCTTCATGCAGCGTTTC
ATCACACATATGAGGCCCTCCTCCTCCCGATCCACCAGGGCCAGGCAGGC
ACCCAGCTTCGAGAACATCTCCGCCGCGGCGGCCCCGATCCCGGAGGCTG
CGCCCGTGATAAGCACCACTTTGCCGGAGAAGTCCAGACCAGCCTTGCCC
TTGCTGCCCATGTCGACTGATAACT

BS06513.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG31546-PA 795 CG31546-RA 1..795 811..17 3975 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:09:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG31546-RA 999 CG31546-RA 63..857 811..17 3975 100 Minus
CG31549-RB 991 CG31549-RB 465..782 391..74 390 75.6 Minus
CG31549-RA 1130 CG31549-RA 604..921 391..74 390 75.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:09:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5634768..5635562 17..811 3975 100 Plus
3R 32079331 3R 5632795..5633112 391..74 390 74.8 Minus
Blast to na_te.dros performed on 2015-02-10 19:09:42 has no hits.

BS06513.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:43:20 Download gff for BS06513.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31546-PA 1..795 17..811 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:23:22 Download gff for BS06513.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31546-PA 1..795 17..811 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:14:44 Download gff for BS06513.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31546-RA 53..860 12..823 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:29:44 Download gff for BS06513.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31546-RA 53..860 12..823 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:29:44 Download gff for BS06513.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5634763..5635572 12..823 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:14:44 Download gff for BS06513.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1460485..1461294 12..823 99   Plus

BS06513.5prime Sequence

825 bp (824 high quality bases) assembled on 2005-12-03

> BS06513.5prime
GAAGTTATCAGTCGACATGGGCAGCAAGGGCAAGGCTGGTCTGGACTTCT
CCGGCAAAGTGGTGCTTATCACGGGCGCAGCCTCCGGGATCGGGGCCGCC
GCGGCGGAGATGTTCTCGAAGCTGGGTGCCTGCCTGGCCCTGGTGGATCG
GGAGGAGGAGGGCCTCATATGTGTGATGAAACGCTGCATGAAGATGGGCC
ACGAGCCGTACGGCATAGCCGGAGATCTGCTCAAGCCTCCGGAGATCGAA
TGCATTGCGCGGAAGACCACGGAGCGCTACGAGGGCAAGCTGGATGTGCT
GGTAAATGGGGCTGGCATCATGCCCACGGGAACGCTGCAGAGCACGGAAC
TGGCCTGCTTCACCCACGTGATGGAGGCCAATGTGCGTTCTGGGTTTTAT
CTGACCAAGTTGCTGCTGCCCCAGTTGCTGCAGTGTAAGGGCAGCATTGT
CAACGTGTCCAGCGTCTGCGGACTTCGCGCTTTTCCCAATCTGGTGGCCT
ACAACATGTCCAAGGCGGCGGTGGACCAGTTTACCCGCTCCCTTGCCCTG
GATCTGGGTCCCCAGGGTGTTCGGGTGAATGCGGTCAATCCGGGTGTGAT
TCGCACCAATCTGCAAAAGGCGGGGGGCATGGACGAGCAGAGCTACGCCG
AATTTCTGGAGCACTCGAAGAAGACCCACGCCCTGGGCCGGATTGGGGAG
CCAAAGGAGGTGGCGGCCGCCATTTGCTTCCTGGCCAGCGAGCTGGCCAG
CTTCGTGACCGGCGTGACCCTTCCTGTGGACGGTGGCAAGCAGGTCATGT
GTCCGCGCTAGAAGCTTTCTAGACC

BS06513.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG31546-PA 795 CG31546-RA 1..795 17..811 3975 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:46:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG31546-RA 999 CG31546-RA 63..857 17..811 3975 100 Plus
CG31549-RB 991 CG31549-RB 465..782 437..754 390 75.6 Plus
CG31549-RA 1130 CG31549-RA 604..921 437..754 390 75.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:46:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5634768..5635562 811..17 3975 100 Minus
3R 32079331 3R 5632795..5633112 437..754 390 74.8 Plus
Blast to na_te.dros performed on 2015-02-09 22:46:27 has no hits.

BS06513.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:43:21 Download gff for BS06513.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31546-PA 1..795 17..811 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:23:22 Download gff for BS06513.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31546-PA 1..795 17..811 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:27:51 Download gff for BS06513.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31546-RA 53..860 5..816 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:48:30 Download gff for BS06513.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31546-RA 53..860 5..816 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:48:30 Download gff for BS06513.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5634763..5635572 5..816 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:27:51 Download gff for BS06513.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1460485..1461294 5..816 99   Minus

BS06513.complete Sequence

827 bp (827 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635527

> BS06513.complete
GAAGTTATCAGTCGACATGGGCAGCAAGGGCAAGGCTGGTCTGGACTTCT
CCGGCAAAGTGGTGCTTATCACGGGCGCAGCCTCCGGGATCGGGGCCGCC
GCGGCGGAGATGTTCTCGAAGCTGGGTGCCTGCCTGGCCCTGGTGGATCG
GGAGGAGGAGGGCCTCATATGTGTGATGAAACGCTGCATGAAGATGGGCC
ACGAGCCGTACGGCATAGCCGGAGATCTGCTCAAGCCTCCGGAGATCGAA
TGCATTGCGCGGAAGACCACGGAGCGCTACGAGGGCAAGCTGGATGTGCT
GGTAAATGGGGCTGGCATCATGCCCACGGGAACGCTGCAGAGCACGGAAC
TGGCCTGCTTCACCCACGTGATGGAGGCCAATGTGCGTTCTGGGTTTTAT
CTGACCAAGTTGCTGCTGCCCCAGTTGCTGCAGTGTAAGGGCAGCATTGT
CAACGTGTCCAGCGTCTGCGGACTTCGCGCTTTTCCCAATCTGGTGGCCT
ACAACATGTCCAAGGCGGCGGTGGACCAGTTTACCCGCTCCCTTGCCCTG
GATCTGGGTCCCCAGGGTGTTCGGGTGAATGCGGTCAATCCGGGTGTGAT
TCGCACCAATCTGCAAAAGGCGGGGGGCATGGACGAGCAGAGCTACGCCG
AATTTCTGGAGCACTCGAAGAAGACCCACGCCCTGGGCCGGATTGGGGAG
CCAAAGGAGGTGGCGGCCGCCATTTGCTTCCTGGCCAGCGAGCTGGCCAG
CTTCGTGACCGGCGTGACCCTTCCTGTGGACGGTGGCAAGCAGGTCATGT
GTCCGCGCTAGAAGCTTTCTAGACCAT

BS06513.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:08:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG31546-RA 795 CG31546-PA 1..795 17..811 3975 100 Plus
CG31549-RB 774 CG31549-PB 400..717 437..754 390 74.8 Plus
CG31549-RA 774 CG31549-PA 400..717 437..754 390 74.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:08:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG31546-RA 999 CG31546-RA 63..857 17..811 3975 100 Plus
CG31549-RB 991 CG31549-RB 465..782 437..754 390 74.8 Plus
CG31549-RA 1130 CG31549-RA 604..921 437..754 390 74.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:08:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5634768..5635562 811..17 3975 100 Minus
3R 32079331 3R 5632795..5633112 437..754 390 74.8 Plus
Blast to na_te.dros performed on 2014-11-26 16:08:45 has no hits.

BS06513.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:39 Download gff for BS06513.complete
Subject Subject Range Query Range Percent Splice Strand
CG31546-RA 1..795 17..811 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:56 Download gff for BS06513.complete
Subject Subject Range Query Range Percent Splice Strand
CG31546-RA 53..860 5..816 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:53:22 Download gff for BS06513.complete
Subject Subject Range Query Range Percent Splice Strand
CG31546-RA 63..857 17..811 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:39 Download gff for BS06513.complete
Subject Subject Range Query Range Percent Splice Strand
CG31546-RA 53..860 5..816 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:15 Download gff for BS06513.complete
Subject Subject Range Query Range Percent Splice Strand
CG31546-RA 63..857 17..811 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:15 Download gff for BS06513.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5634768..5635562 17..811 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:53:22 Download gff for BS06513.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1460490..1461284 17..811 100   Minus

BS06513.pep Sequence

Translation from 16 to 810

> BS06513.pep
MGSKGKAGLDFSGKVVLITGAASGIGAAAAEMFSKLGACLALVDREEEGL
ICVMKRCMKMGHEPYGIAGDLLKPPEIECIARKTTERYEGKLDVLVNGAG
IMPTGTLQSTELACFTHVMEANVRSGFYLTKLLLPQLLQCKGSIVNVSSV
CGLRAFPNLVAYNMSKAAVDQFTRSLALDLGPQGVRVNAVNPGVIRTNLQ
KAGGMDEQSYAEFLEHSKKTHALGRIGEPKEVAAAICFLASELASFVTGV
TLPVDGGKQVMCPR*

BS06513.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG31546-PA 264 CG31546-PA 1..264 1..264 1349 100 Plus
CG31548-PA 256 CG31548-PA 1..256 9..264 716 57.6 Plus
CG31549-PB 257 CG31549-PB 4..257 11..264 706 56.5 Plus
CG31549-PA 257 CG31549-PA 4..257 11..264 706 56.5 Plus
CG12171-PA 257 CG12171-PA 4..257 11..264 672 52.9 Plus