Clone BS06517 Report

Search the DGRC for BS06517

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:65
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG11790-RA
Protein status:BS06517.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06517.3prime Sequence

902 bp (829 high quality bases) assembled on 2005-12-03

> BS06517.3prime
ATGGTCTAGAAAGCTTTTATTTCGACTTATTTTTTGTTTTCGCAGGCTCT
GAACTGAATATTTTGGCAACCTTTTTGCCAACGAATAAGAGAGCAACTAA
GGCGAAAATACTCAAAGTCGCCAGCGATGTTATGTTTTCAGCTGCAAAAT
AACTTTGCAGTGGGCCCAAAAATTCGTTTACGGCACTTGGGATTGCGGGC
ACTGGTTGAGGATGGCTCTGGGTATATCCCTTCTCAGCAAACTGGACAAA
GGCTTCGGGACTGTATTGCTTGGCTGAATATTTGTACATCTTTCCTTGCC
TCAAGAAAATAAAAGCCGGTGCTTCCAATACTCCCAGTCGCGTAGCAGTT
GAGATTCCAGACTCCAAACTGTTCATGCGGGCAATATTCAGCTTTCGCTT
TAGCTTTCCGCCCACAGACTCCCAAACGGCATAGAGTCGCTGACAGACGG
TACATTCGGCCGAAGAGAAGAAGATAAACCAGTCCCCGGTAGTGGCACCC
GACGAGGCTTGAGTCAGGTGCTCGAAGTTGTCGTCGGAAAGCTCTTTGAC
CGCTGGCTCTAAGTTGTCATTGAAGAAGTCTAGGATTTCGTCATCGTTGA
TCTCGCCATGGTATAGAATGGGTATTCCTCGCCTGAAGAACACCAAAGCG
GGCTCCTTGCTGGGGTCATAGATGGATACCAGGTTGCTGTCCACCGACTG
GACCACAATGGCCGACAAGGTCTCCTCCAGCTGGGCACGTATCTTGGTCA
CCATGTTCTCATATTCCACGCAGCGCTGGCAATTGTTTTTGTTGAATAGG
ACAACCACATTGCTGCTGCCGGTCAGGAGTTGAAATCACTCGGTGTCGTC
CACACGCCGCAAATCCTGGGCAACGGCACAGCCCAGACTCAGGGCTATNA
TA

BS06517.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG11790-PA 909 CG11790-RA 92..909 834..17 4090 100 Minus
CG11790-PB 738 CG11790-RB 1..738 754..17 3690 100 Minus
CG11790-PA 909 CG11790-RA 24..88 902..838 281 96.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG11790-RA 1010 CG11790-RA 104..991 902..15 4369 99.6 Minus
CG11790-RB 1116 CG11790-RB 320..1097 792..15 3890 100 Minus
CG11790-RC 1040 CG11790-RC 104..826 902..180 3544 99.4 Minus
CG11790-RB 1116 CG11790-RB 104..213 902..793 479 96.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25048025..25048349 792..468 1625 100 Minus
3R 32079331 3R 25049272..25049436 179..15 825 100 Minus
3R 32079331 3R 25048442..25048603 467..306 810 100 Minus
3R 32079331 3R 25048665..25048790 305..180 630 100 Minus
3R 32079331 3R 25047809..25047918 902..793 479 95.5 Minus
Blast to na_te.dros performed on 2015-02-12 00:55:24 has no hits.

BS06517.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:43:26 Download gff for BS06517.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11790-PA 25..909 17..901 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:23:30 Download gff for BS06517.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11790-PA 25..909 17..901 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:49:02 Download gff for BS06517.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11790-RA 105..997 7..901 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:28:55 Download gff for BS06517.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11790-RA 105..997 7..901 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:28:55 Download gff for BS06517.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25049272..25049442 7..179 97   Minus
3R 25047810..25047918 793..901 96 -> Minus
3R 25048025..25048349 468..792 100 -> Minus
3R 25048442..25048603 306..467 100 -> Minus
3R 25048665..25048790 180..305 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:49:02 Download gff for BS06517.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20873532..20873640 793..901 96 -> Minus
arm_3R 20873747..20874071 468..792 100 -> Minus
arm_3R 20874164..20874325 306..467 100 -> Minus
arm_3R 20874387..20874512 180..305 100 -> Minus
arm_3R 20874994..20875164 7..179 97   Minus

BS06517.5prime Sequence

865 bp (801 high quality bases) assembled on 2005-12-03

> BS06517.5prime
GAAGTTATCAGTCGACATGCTGCACATAGTATCGGTTGTTATTATAGCCC
TGAGTCTGGGCTGTGCCGTTGGCCAGGATTTGCGGCGTGTGGACGACACC
GAGTTGATTCAACTCCTGACCGGCAGCAGCAATGTGGTTGTCCTATTCAA
CAAAAACAATTGCCAGCGCTGCGTGGAATATGAGAACATGGTGACCAAGA
TACGTGCCCAGCTGGAGGAGACCTTGTCGGCCATTGTGGTCCAGTCGGTG
GACAGCAACCTGGTATCCATCTATGACCCCAGCAAGGAGCCCGCTTTGGT
GTTCTTCAGGCGAGGAATACCCATTCTATACCATGGCGAGATCAACGATG
ACGAAATCCTAGACTTCTTCAATGACAACTTAGAGCCAGCGGTCAAAGAG
CTTTCCGACGACAACTTCGAGCACCTGACTCAAGCCTCGTCGGGTGCCAC
TACCGGGGACTGGTTTATCTTCTTCTCTTCGGCCGAATGTACCGTCTGTC
AGCGACTCTATGCCGTTTGGGAGTCTGTGGGCGGAAAGCTAAAGCGAAAG
CTGAATATTGCCCGCATGAACAGTTTGGAGTCTGGAATCTCAACTGCTAC
GCGACTGGGAGTATTGGAAGCACCGGCTTTTATTTTCTTGAGGCAAGGAA
AGATGTACAAATATTCAGCCAAGCAATACAGTCCCGAAGCCTTTGTCCAG
TTTGCTGAGAAGGGATATACCCAGAGCCATCCTCAACCAGTGCCCGCAAT
CCCAAGTGCCGTAAACGAATTTTTGGGCCCACTGCAAAGTTATTTTGCAG
CTGAAAACATAACATCGCTGGCGACTTTGAGTATTTTCGCCTTAGTTGCT
CTCTTATTTCGTGGC

BS06517.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG11790-PA 909 CG11790-RA 1..842 17..858 4210 100 Plus
CG11790-PB 738 CG11790-RB 1..671 188..858 3355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG11790-RA 1010 CG11790-RA 81..922 17..858 4210 100 Plus
CG11790-RC 1040 CG11790-RC 81..826 17..762 3730 100 Plus
CG11790-RB 1116 CG11790-RB 320..1028 150..858 3545 100 Plus
CG11790-RC 1040 CG11790-RC 857..952 763..858 480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:50:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25048025..25048349 150..474 1625 100 Plus
3R 32079331 3R 25048442..25048603 475..636 810 100 Plus
3R 32079331 3R 25047786..25047918 17..149 665 100 Plus
3R 32079331 3R 25048665..25048790 637..762 630 100 Plus
3R 32079331 3R 25049272..25049367 763..858 480 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:50:16 has no hits.

BS06517.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:43:28 Download gff for BS06517.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11790-PA 1..849 17..865 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:23:31 Download gff for BS06517.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11790-PA 1..849 17..865 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:03:57 Download gff for BS06517.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11790-RA 81..929 17..865 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:22:42 Download gff for BS06517.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11790-RA 81..929 17..865 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:22:42 Download gff for BS06517.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25049272..25049374 763..865 98   Plus
3R 25047786..25047918 17..149 100 -> Plus
3R 25048025..25048349 150..474 100 -> Plus
3R 25048442..25048603 475..636 100 -> Plus
3R 25048665..25048790 637..762 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:03:57 Download gff for BS06517.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20873508..20873640 17..149 100 -> Plus
arm_3R 20873747..20874071 150..474 100 -> Plus
arm_3R 20874164..20874325 475..636 100 -> Plus
arm_3R 20874387..20874512 637..762 100 -> Plus
arm_3R 20874994..20875096 763..865 98   Plus

BS06517.complete Sequence

941 bp (941 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635528

> BS06517.complete
GAAGTTATCAGTCGACATGCTGCACATAGTATCGGTTGTTATTATAGCCC
TGAGTCTGGGCTGTGCCGTTGGCCAGGATTTGCGGCGTGTGGACGACACC
GAGTTGATTCAACTCCTGACCGGCAGCAGCAATGTGGTTGTCCTATTCAA
CAAAAACAATTGCCAGCGCTGCGTGGAATATGAGAACATGGTGACCAAGA
TACGTGCCCAGCTGGAGGAGACCTTGTCGGCCATTGTGGTCCAGTCGGTG
GACAGCAACCTGGTATCCATCTATGACCCCAGCAAGGAGCCCGCTTTGGT
GTTCTTCAGGCGAGGAATACCCATTCTATACCATGGCGAGATCAACGATG
ACGAAATCCTAGACTTCTTCAATGACAACTTAGAGCCAGCGGTCAAAGAG
CTTTCCGACGACAACTTCGAGCACCTGACTCAAGCCTCGTCGGGTGCCAC
TACCGGGGACTGGTTTATCTTCTTCTCTTCGGCCGAATGTACCGTCTGTC
AGCGACTCTATGCCGTTTGGGAGTCTGTGGGCGGAAAGCTAAAGCGAAAG
CTGAATATTGCCCGCATGAACAGTTTGGAGTCTGGAATCTCAACTGCTAC
GCGACTGGGAGTATTGGAAGCACCGGCTTTTATTTTCTTGAGGCAAGGAA
AGATGTACAAATATTCAGCCAAGCAATACAGTCCCGAAGCCTTTGTCCAG
TTTGCTGAGAAGGGATATACCCAGAGCCATCCTCAACCAGTGCCCGCAAT
CCCAAGTGCCGTAAACGAATTTTTGGGCCCACTGCAAAGTTATTTTGCAG
CTGAAAACATAACATCGCTGGCGACTTTGAGTATTTTCGCCTTAGTTGCT
CTCTTATTCGTTGGCAAAAAGGTTGCCAAAATATTCAGTTCAGAGCCTGC
GAAAACAAAAAATAAGTCGAAATAAAAGCTTTCTAGACCAT

BS06517.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG11790-RA 909 CG11790-PA 1..909 17..925 4545 100 Plus
CG11790-RC 756 CG11790-PC 1..746 17..762 3730 100 Plus
CG11790-RB 738 CG11790-PB 1..738 188..925 3690 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:04:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG11790-RA 1010 CG11790-RA 81..991 17..927 4555 100 Plus
CG11790-RB 1116 CG11790-RB 320..1097 150..927 3890 100 Plus
CG11790-RC 1040 CG11790-RC 81..826 17..762 3730 100 Plus
CG11790-RB 1116 CG11790-RB 81..213 17..149 665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25048025..25048349 150..474 1625 100 Plus
3R 32079331 3R 25049272..25049436 763..927 825 100 Plus
3R 32079331 3R 25048442..25048603 475..636 810 100 Plus
3R 32079331 3R 25047786..25047918 17..149 665 100 Plus
3R 32079331 3R 25048665..25048790 637..762 630 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:04:18 has no hits.

BS06517.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:40 Download gff for BS06517.complete
Subject Subject Range Query Range Percent Splice Strand
CG11790-RA 1..909 17..925 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:57 Download gff for BS06517.complete
Subject Subject Range Query Range Percent Splice Strand
CG11790-RA 87..1003 17..935 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:51:41 Download gff for BS06517.complete
Subject Subject Range Query Range Percent Splice Strand
CG11790-RA 81..987 17..923 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:40 Download gff for BS06517.complete
Subject Subject Range Query Range Percent Splice Strand
CG11790-RA 87..1003 17..935 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:10:32 Download gff for BS06517.complete
Subject Subject Range Query Range Percent Splice Strand
CG11790-RA 81..987 17..923 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:10:32 Download gff for BS06517.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25049272..25049432 763..923 100   Plus
3R 25047786..25047918 17..149 100 -> Plus
3R 25048025..25048349 150..474 100 -> Plus
3R 25048442..25048603 475..636 100 -> Plus
3R 25048665..25048790 637..762 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:51:41 Download gff for BS06517.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20873508..20873640 17..149 100 -> Plus
arm_3R 20873747..20874071 150..474 100 -> Plus
arm_3R 20874164..20874325 475..636 100 -> Plus
arm_3R 20874387..20874512 637..762 100 -> Plus
arm_3R 20874994..20875154 763..923 100   Plus

BS06517.pep Sequence

Translation from 16 to 924

> BS06517.pep
MLHIVSVVIIALSLGCAVGQDLRRVDDTELIQLLTGSSNVVVLFNKNNCQ
RCVEYENMVTKIRAQLEETLSAIVVQSVDSNLVSIYDPSKEPALVFFRRG
IPILYHGEINDDEILDFFNDNLEPAVKELSDDNFEHLTQASSGATTGDWF
IFFSSAECTVCQRLYAVWESVGGKLKRKLNIARMNSLESGISTATRLGVL
EAPAFIFLRQGKMYKYSAKQYSPEAFVQFAEKGYTQSHPQPVPAIPSAVN
EFLGPLQSYFAAENITSLATLSIFALVALLFVGKKVAKIFSSEPAKTKNK
SK*

BS06517.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG11790-PA 302 CG11790-PA 1..302 1..302 1526 100 Plus
CG11790-PC 251 CG11790-PC 1..250 1..250 1272 99.6 Plus
CG11790-PB 245 CG11790-PB 1..245 58..302 1239 100 Plus