Clone Sequence Records
BS06517.3prime Sequence
902 bp (829 high quality bases) assembled on 2005-12-03
> BS06517.3prime
ATGGTCTAGAAAGCTTTTATTTCGACTTATTTTTTGTTTTCGCAGGCTCT
GAACTGAATATTTTGGCAACCTTTTTGCCAACGAATAAGAGAGCAACTAA
GGCGAAAATACTCAAAGTCGCCAGCGATGTTATGTTTTCAGCTGCAAAAT
AACTTTGCAGTGGGCCCAAAAATTCGTTTACGGCACTTGGGATTGCGGGC
ACTGGTTGAGGATGGCTCTGGGTATATCCCTTCTCAGCAAACTGGACAAA
GGCTTCGGGACTGTATTGCTTGGCTGAATATTTGTACATCTTTCCTTGCC
TCAAGAAAATAAAAGCCGGTGCTTCCAATACTCCCAGTCGCGTAGCAGTT
GAGATTCCAGACTCCAAACTGTTCATGCGGGCAATATTCAGCTTTCGCTT
TAGCTTTCCGCCCACAGACTCCCAAACGGCATAGAGTCGCTGACAGACGG
TACATTCGGCCGAAGAGAAGAAGATAAACCAGTCCCCGGTAGTGGCACCC
GACGAGGCTTGAGTCAGGTGCTCGAAGTTGTCGTCGGAAAGCTCTTTGAC
CGCTGGCTCTAAGTTGTCATTGAAGAAGTCTAGGATTTCGTCATCGTTGA
TCTCGCCATGGTATAGAATGGGTATTCCTCGCCTGAAGAACACCAAAGCG
GGCTCCTTGCTGGGGTCATAGATGGATACCAGGTTGCTGTCCACCGACTG
GACCACAATGGCCGACAAGGTCTCCTCCAGCTGGGCACGTATCTTGGTCA
CCATGTTCTCATATTCCACGCAGCGCTGGCAATTGTTTTTGTTGAATAGG
ACAACCACATTGCTGCTGCCGGTCAGGAGTTGAAATCACTCGGTGTCGTC
CACACGCCGCAAATCCTGGGCAACGGCACAGCCCAGACTCAGGGCTATNA
TA
BS06517.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11790-PA | 909 | CG11790-RA | 92..909 | 834..17 | 4090 | 100 | Minus |
CG11790-PB | 738 | CG11790-RB | 1..738 | 754..17 | 3690 | 100 | Minus |
CG11790-PA | 909 | CG11790-RA | 24..88 | 902..838 | 281 | 96.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:55:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11790-RA | 1010 | CG11790-RA | 104..991 | 902..15 | 4369 | 99.6 | Minus |
CG11790-RB | 1116 | CG11790-RB | 320..1097 | 792..15 | 3890 | 100 | Minus |
CG11790-RC | 1040 | CG11790-RC | 104..826 | 902..180 | 3544 | 99.4 | Minus |
CG11790-RB | 1116 | CG11790-RB | 104..213 | 902..793 | 479 | 96.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:55:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25048025..25048349 | 792..468 | 1625 | 100 | Minus |
3R | 32079331 | 3R | 25049272..25049436 | 179..15 | 825 | 100 | Minus |
3R | 32079331 | 3R | 25048442..25048603 | 467..306 | 810 | 100 | Minus |
3R | 32079331 | 3R | 25048665..25048790 | 305..180 | 630 | 100 | Minus |
3R | 32079331 | 3R | 25047809..25047918 | 902..793 | 479 | 95.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:55:24 has no hits.
BS06517.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:43:26 Download gff for
BS06517.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-PA | 25..909 | 17..901 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:23:30 Download gff for
BS06517.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-PA | 25..909 | 17..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:49:02 Download gff for
BS06517.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-RA | 105..997 | 7..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:28:55 Download gff for
BS06517.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-RA | 105..997 | 7..901 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:28:55 Download gff for
BS06517.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25049272..25049442 | 7..179 | 97 | | Minus |
3R | 25047810..25047918 | 793..901 | 96 | -> | Minus |
3R | 25048025..25048349 | 468..792 | 100 | -> | Minus |
3R | 25048442..25048603 | 306..467 | 100 | -> | Minus |
3R | 25048665..25048790 | 180..305 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:49:02 Download gff for
BS06517.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20873532..20873640 | 793..901 | 96 | -> | Minus |
arm_3R | 20873747..20874071 | 468..792 | 100 | -> | Minus |
arm_3R | 20874164..20874325 | 306..467 | 100 | -> | Minus |
arm_3R | 20874387..20874512 | 180..305 | 100 | -> | Minus |
arm_3R | 20874994..20875164 | 7..179 | 97 | | Minus |
BS06517.5prime Sequence
865 bp (801 high quality bases) assembled on 2005-12-03
> BS06517.5prime
GAAGTTATCAGTCGACATGCTGCACATAGTATCGGTTGTTATTATAGCCC
TGAGTCTGGGCTGTGCCGTTGGCCAGGATTTGCGGCGTGTGGACGACACC
GAGTTGATTCAACTCCTGACCGGCAGCAGCAATGTGGTTGTCCTATTCAA
CAAAAACAATTGCCAGCGCTGCGTGGAATATGAGAACATGGTGACCAAGA
TACGTGCCCAGCTGGAGGAGACCTTGTCGGCCATTGTGGTCCAGTCGGTG
GACAGCAACCTGGTATCCATCTATGACCCCAGCAAGGAGCCCGCTTTGGT
GTTCTTCAGGCGAGGAATACCCATTCTATACCATGGCGAGATCAACGATG
ACGAAATCCTAGACTTCTTCAATGACAACTTAGAGCCAGCGGTCAAAGAG
CTTTCCGACGACAACTTCGAGCACCTGACTCAAGCCTCGTCGGGTGCCAC
TACCGGGGACTGGTTTATCTTCTTCTCTTCGGCCGAATGTACCGTCTGTC
AGCGACTCTATGCCGTTTGGGAGTCTGTGGGCGGAAAGCTAAAGCGAAAG
CTGAATATTGCCCGCATGAACAGTTTGGAGTCTGGAATCTCAACTGCTAC
GCGACTGGGAGTATTGGAAGCACCGGCTTTTATTTTCTTGAGGCAAGGAA
AGATGTACAAATATTCAGCCAAGCAATACAGTCCCGAAGCCTTTGTCCAG
TTTGCTGAGAAGGGATATACCCAGAGCCATCCTCAACCAGTGCCCGCAAT
CCCAAGTGCCGTAAACGAATTTTTGGGCCCACTGCAAAGTTATTTTGCAG
CTGAAAACATAACATCGCTGGCGACTTTGAGTATTTTCGCCTTAGTTGCT
CTCTTATTTCGTGGC
BS06517.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11790-PA | 909 | CG11790-RA | 1..842 | 17..858 | 4210 | 100 | Plus |
CG11790-PB | 738 | CG11790-RB | 1..671 | 188..858 | 3355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:50:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11790-RA | 1010 | CG11790-RA | 81..922 | 17..858 | 4210 | 100 | Plus |
CG11790-RC | 1040 | CG11790-RC | 81..826 | 17..762 | 3730 | 100 | Plus |
CG11790-RB | 1116 | CG11790-RB | 320..1028 | 150..858 | 3545 | 100 | Plus |
CG11790-RC | 1040 | CG11790-RC | 857..952 | 763..858 | 480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:50:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25048025..25048349 | 150..474 | 1625 | 100 | Plus |
3R | 32079331 | 3R | 25048442..25048603 | 475..636 | 810 | 100 | Plus |
3R | 32079331 | 3R | 25047786..25047918 | 17..149 | 665 | 100 | Plus |
3R | 32079331 | 3R | 25048665..25048790 | 637..762 | 630 | 100 | Plus |
3R | 32079331 | 3R | 25049272..25049367 | 763..858 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:50:16 has no hits.
BS06517.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:43:28 Download gff for
BS06517.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-PA | 1..849 | 17..865 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:23:31 Download gff for
BS06517.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-PA | 1..849 | 17..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:03:57 Download gff for
BS06517.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-RA | 81..929 | 17..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:22:42 Download gff for
BS06517.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-RA | 81..929 | 17..865 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:22:42 Download gff for
BS06517.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25049272..25049374 | 763..865 | 98 | | Plus |
3R | 25047786..25047918 | 17..149 | 100 | -> | Plus |
3R | 25048025..25048349 | 150..474 | 100 | -> | Plus |
3R | 25048442..25048603 | 475..636 | 100 | -> | Plus |
3R | 25048665..25048790 | 637..762 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:03:57 Download gff for
BS06517.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20873508..20873640 | 17..149 | 100 | -> | Plus |
arm_3R | 20873747..20874071 | 150..474 | 100 | -> | Plus |
arm_3R | 20874164..20874325 | 475..636 | 100 | -> | Plus |
arm_3R | 20874387..20874512 | 637..762 | 100 | -> | Plus |
arm_3R | 20874994..20875096 | 763..865 | 98 | | Plus |
BS06517.complete Sequence
941 bp (941 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635528
> BS06517.complete
GAAGTTATCAGTCGACATGCTGCACATAGTATCGGTTGTTATTATAGCCC
TGAGTCTGGGCTGTGCCGTTGGCCAGGATTTGCGGCGTGTGGACGACACC
GAGTTGATTCAACTCCTGACCGGCAGCAGCAATGTGGTTGTCCTATTCAA
CAAAAACAATTGCCAGCGCTGCGTGGAATATGAGAACATGGTGACCAAGA
TACGTGCCCAGCTGGAGGAGACCTTGTCGGCCATTGTGGTCCAGTCGGTG
GACAGCAACCTGGTATCCATCTATGACCCCAGCAAGGAGCCCGCTTTGGT
GTTCTTCAGGCGAGGAATACCCATTCTATACCATGGCGAGATCAACGATG
ACGAAATCCTAGACTTCTTCAATGACAACTTAGAGCCAGCGGTCAAAGAG
CTTTCCGACGACAACTTCGAGCACCTGACTCAAGCCTCGTCGGGTGCCAC
TACCGGGGACTGGTTTATCTTCTTCTCTTCGGCCGAATGTACCGTCTGTC
AGCGACTCTATGCCGTTTGGGAGTCTGTGGGCGGAAAGCTAAAGCGAAAG
CTGAATATTGCCCGCATGAACAGTTTGGAGTCTGGAATCTCAACTGCTAC
GCGACTGGGAGTATTGGAAGCACCGGCTTTTATTTTCTTGAGGCAAGGAA
AGATGTACAAATATTCAGCCAAGCAATACAGTCCCGAAGCCTTTGTCCAG
TTTGCTGAGAAGGGATATACCCAGAGCCATCCTCAACCAGTGCCCGCAAT
CCCAAGTGCCGTAAACGAATTTTTGGGCCCACTGCAAAGTTATTTTGCAG
CTGAAAACATAACATCGCTGGCGACTTTGAGTATTTTCGCCTTAGTTGCT
CTCTTATTCGTTGGCAAAAAGGTTGCCAAAATATTCAGTTCAGAGCCTGC
GAAAACAAAAAATAAGTCGAAATAAAAGCTTTCTAGACCAT
BS06517.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:04:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11790-RA | 909 | CG11790-PA | 1..909 | 17..925 | 4545 | 100 | Plus |
CG11790-RC | 756 | CG11790-PC | 1..746 | 17..762 | 3730 | 100 | Plus |
CG11790-RB | 738 | CG11790-PB | 1..738 | 188..925 | 3690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:04:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11790-RA | 1010 | CG11790-RA | 81..991 | 17..927 | 4555 | 100 | Plus |
CG11790-RB | 1116 | CG11790-RB | 320..1097 | 150..927 | 3890 | 100 | Plus |
CG11790-RC | 1040 | CG11790-RC | 81..826 | 17..762 | 3730 | 100 | Plus |
CG11790-RB | 1116 | CG11790-RB | 81..213 | 17..149 | 665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:04:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25048025..25048349 | 150..474 | 1625 | 100 | Plus |
3R | 32079331 | 3R | 25049272..25049436 | 763..927 | 825 | 100 | Plus |
3R | 32079331 | 3R | 25048442..25048603 | 475..636 | 810 | 100 | Plus |
3R | 32079331 | 3R | 25047786..25047918 | 17..149 | 665 | 100 | Plus |
3R | 32079331 | 3R | 25048665..25048790 | 637..762 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:04:18 has no hits.
BS06517.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:40 Download gff for
BS06517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-RA | 1..909 | 17..925 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:57 Download gff for
BS06517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-RA | 87..1003 | 17..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:51:41 Download gff for
BS06517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-RA | 81..987 | 17..923 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:40 Download gff for
BS06517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-RA | 87..1003 | 17..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:10:32 Download gff for
BS06517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-RA | 81..987 | 17..923 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:10:32 Download gff for
BS06517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25049272..25049432 | 763..923 | 100 | | Plus |
3R | 25047786..25047918 | 17..149 | 100 | -> | Plus |
3R | 25048025..25048349 | 150..474 | 100 | -> | Plus |
3R | 25048442..25048603 | 475..636 | 100 | -> | Plus |
3R | 25048665..25048790 | 637..762 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:51:41 Download gff for
BS06517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20873508..20873640 | 17..149 | 100 | -> | Plus |
arm_3R | 20873747..20874071 | 150..474 | 100 | -> | Plus |
arm_3R | 20874164..20874325 | 475..636 | 100 | -> | Plus |
arm_3R | 20874387..20874512 | 637..762 | 100 | -> | Plus |
arm_3R | 20874994..20875154 | 763..923 | 100 | | Plus |
BS06517.pep Sequence
Translation from 16 to 924
> BS06517.pep
MLHIVSVVIIALSLGCAVGQDLRRVDDTELIQLLTGSSNVVVLFNKNNCQ
RCVEYENMVTKIRAQLEETLSAIVVQSVDSNLVSIYDPSKEPALVFFRRG
IPILYHGEINDDEILDFFNDNLEPAVKELSDDNFEHLTQASSGATTGDWF
IFFSSAECTVCQRLYAVWESVGGKLKRKLNIARMNSLESGISTATRLGVL
EAPAFIFLRQGKMYKYSAKQYSPEAFVQFAEKGYTQSHPQPVPAIPSAVN
EFLGPLQSYFAAENITSLATLSIFALVALLFVGKKVAKIFSSEPAKTKNK
SK*
BS06517.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11790-PA | 302 | CG11790-PA | 1..302 | 1..302 | 1526 | 100 | Plus |
CG11790-PC | 251 | CG11790-PC | 1..250 | 1..250 | 1272 | 99.6 | Plus |
CG11790-PB | 245 | CG11790-PB | 1..245 | 58..302 | 1239 | 100 | Plus |