Clone Sequence Records
BS06520.3prime Sequence
834 bp (833 high quality bases) assembled on 2005-12-03
> BS06520.3prime
ATGGTCTAGAAAGCTTTTATACCTCTAAATCCTCTAGGACGTCCTGAAGC
TCGGTAGCTACCCCCAGATCGTCGTCGTGATCTGATTTTCCCGAGTCCTC
AGCCGATTTATCCACATTGCCACCCACCAATCGATCAGTATCAATACCAA
ACTTGAGTTCAAAGGGAAAACTCAGCTTGGGCACCTCGAAAGTGTGCATG
TGGTAGTCGTAGTTGGTCTGCTCTTCTGGCGGAGCCGGGCAAGCGTGTTT
AGCTTGAGGATTTCTATCTAAACCAGTCTGATGCCCCTCTTGTTCGGGAT
GCATATAGATGGTGTGTCCCGCTCCCGTCGCATTGTAGGCGTCATTTTCG
GTGATACGCTTTGTGGAAGTATCAGGAGTTATTTCGGTATCGTCAATGAG
TATGTTTATATCAATGGGCACGAGCATGTAGGTTTCTCCAGTACTTTCAT
CGGTTTGAATTTGGCTTAACTGCTCGTAGTCCTCGTCTGAAATGCAATCC
AAATTTATTACATGGTCAGATTTCCAGCGAGCAATTTCCTTGGCGTCTGC
GCGTTGAAACTTATCCGATTCCGAAGATCCAGTAGCTACTCCATTTGAGG
TAATCTTAAATTTGTATAATAGCGGTTCTTTGAGCTGGACAAAAGCCTCT
GGCTTACCAGCCTCCACATAAACTTGCACTTTATCCAGTGCATTGGCTAT
GAAATCATCGTTTGATAGCTCATTCCGCTCCTGCTGGCTTTCGTCCTCTA
TTTCCTGTGCCAGCAACTGCTGAAGCTTGATCATTTGCTCCTTGGTCAGA
TTGAGATCCTTTAGACTCATGTCGACTGATAACT
BS06520.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8508-PA | 804 | CG8508-RA | 1..804 | 820..17 | 4020 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:47:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8508-RA | 971 | CG8508-RA | 29..833 | 820..16 | 4025 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:47:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13185664..13186468 | 16..820 | 4025 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:47:14 has no hits.
BS06520.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:43:33 Download gff for
BS06520.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8508-PA | 1..804 | 17..820 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:23:38 Download gff for
BS06520.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8508-PA | 1..804 | 17..820 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:07:08 Download gff for
BS06520.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8508-RA | 43..855 | 8..820 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:48:27 Download gff for
BS06520.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8508-RA | 29..841 | 8..820 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:48:27 Download gff for
BS06520.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13185656..13186475 | 8..826 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:07:08 Download gff for
BS06520.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9011378..9012197 | 8..826 | 99 | <- | Plus |
BS06520.5prime Sequence
834 bp (800 high quality bases) assembled on 2005-12-03
> BS06520.5prime
GAAGTTATCAGTCGACATGAGTCTAAAGGATCTCAATCTGACCAAGGAGC
AAATGATCAAGCTTCAGCAGTTGCTGGCACAGGAAATAGAGGACGAAAGC
CAGCAGGAGCGGAATGAGCTATCAAACGATGATTTCATAGCCAATGCACT
GGATAAAGTGCAAGTTTATGTGGAGGCTGGTAAGCCAGAGGCTTTTGTCC
AGCTCAAAGAACCGCTATTATACAAATTTAAGATTACCTCAAATGGAGTA
GCTACTGGATCTTCGGAATCGGATAAGTTTCAACGCGCAGACGCCAAGGA
AATTGCTCGCTGGAAATCTGACCATGTAATAAATTTGGATTGCATTTCAG
ACGAGGACTACGAGCAGTTAAGCCAAATTCAAACCGATGAAAGTACTGGA
GAAACCTACATGCTCGTGCCCATTGATATAAACATACTCATTGACGATAC
CGAAATAACTCCTGATACTTCCACAAAGCGTATCACCGAAAATGACGCCT
ACAATGCGACGGGAGCGGGACACACCATCTATATGCATCCCGAACAAGAG
GGGCATCAGACTGGTTTAGATAGAAATCCTCAAGCTAAACACGCTTGCCC
GGCTCCGCCAGAAGAGCAGACCAACTACGACTACCACATGCACACTTTCG
AGGTGCCCAAGCTGAGTTTTCCCTTTGAACTCAAGTTTGGTATTGATACT
GATCGATTGGTGGGTGGCAATGTGGATAAATCGGCTGAGGACTCGGGAAA
ATCAGATCACGACGACGATCTGGGGGTAGCTACCGAGCTTCAGGACGTCC
TAGAGGATTTAGAGGTATAAAAGCTTTCTAGACC
BS06520.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8508-PA | 804 | CG8508-RA | 1..804 | 17..820 | 4020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:50:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8508-RA | 971 | CG8508-RA | 29..833 | 17..821 | 4025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:49:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13185664..13186468 | 821..17 | 4025 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:50:00 has no hits.
BS06520.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:43:34 Download gff for
BS06520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8508-PA | 1..804 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:23:39 Download gff for
BS06520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8508-PA | 1..804 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:44:27 Download gff for
BS06520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8508-RA | 43..855 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:05 Download gff for
BS06520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8508-RA | 29..841 | 17..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:05 Download gff for
BS06520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13185656..13186475 | 11..829 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:44:27 Download gff for
BS06520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9011378..9012197 | 11..829 | 99 | <- | Minus |
BS06520.complete Sequence
836 bp (836 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635529
> BS06520.complete
GAAGTTATCAGTCGACATGAGTCTAAAGGATCTCAATCTGACCAAGGAGC
AAATGATCAAGCTTCAGCAGTTGCTGGCACAGGAAATAGAGGACGAAAGC
CAGCAGGAGCGGAATGAGCTATCAAACGATGATTTCATAGCCAATGCACT
GGATAAAGTGCAAGTTTATGTGGAGGCTGGTAAGCCAGAGGCTTTTGTCC
AGCTCAAAGAACCGCTATTATACAAATTTAAGATTACCTCAAATGGAGTA
GCTACTGGATCTTCGGAATCGGATAAGTTTCAACGCGCAGACGCCAAGGA
AATTGCTCGCTGGAAATCTGACCATGTAATAAATTTGGATTGCATTTCAG
ACGAGGACTACGAGCAGTTAAGCCAAATTCAAACCGATGAAAGTACTGGA
GAAACCTACATGCTCGTGCCCATTGATATAAACATACTCATTGACGATAC
CGAAATAACTCCTGATACTTCCACAAAGCGTATCACCGAAAATGACGCCT
ACAATGCGACGGGAGCGGGACACACCATCTATATGCATCCCGAACAAGAG
GGGCATCAGACTGGTTTAGATAGAAATCCTCAAGCTAAACACGCTTGCCC
GGCTCCGCCAGAAGAGCAGACCAACTACGACTACCACATGCACACTTTCG
AGGTGCCCAAGCTGAGTTTTCCCTTTGAACTCAAGTTTGGTATTGATACT
GATCGATTGGTGGGTGGCAATGTGGATAAATCGGCTGAGGACTCGGGAAA
ATCAGATCACGACGACGATCTGGGGGTAGCTACCGAGCTTCAGGACGTCC
TAGAGGATTTAGAGGTATAAAAGCTTTCTAGACCAT
BS06520.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:30:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8508-RA | 804 | CG8508-PA | 1..804 | 17..820 | 4020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:30:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8508-RA | 971 | CG8508-RA | 29..833 | 17..821 | 4025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:30:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13185664..13186468 | 821..17 | 4025 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:30:35 has no hits.
BS06520.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:41 Download gff for
BS06520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8508-RA | 1..804 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:59 Download gff for
BS06520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8508-RA | 43..855 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:39 Download gff for
BS06520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8508-RA | 43..844 | 17..818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:41 Download gff for
BS06520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8508-RA | 43..855 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:42 Download gff for
BS06520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8508-RA | 29..830 | 17..818 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:42 Download gff for
BS06520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13185667..13186468 | 17..818 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:39 Download gff for
BS06520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9011389..9012190 | 17..818 | 100 | | Minus |
BS06520.pep Sequence
Translation from 16 to 819
> BS06520.pep
MSLKDLNLTKEQMIKLQQLLAQEIEDESQQERNELSNDDFIANALDKVQV
YVEAGKPEAFVQLKEPLLYKFKITSNGVATGSSESDKFQRADAKEIARWK
SDHVINLDCISDEDYEQLSQIQTDESTGETYMLVPIDINILIDDTEITPD
TSTKRITENDAYNATGAGHTIYMHPEQEGHQTGLDRNPQAKHACPAPPEE
QTNYDYHMHTFEVPKLSFPFELKFGIDTDRLVGGNVDKSAEDSGKSDHDD
DLGVATELQDVLEDLEV*
BS06520.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8508-PA | 267 | CG8508-PA | 1..267 | 1..267 | 1388 | 100 | Plus |