Clone BS06520 Report

Search the DGRC for BS06520

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:65
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCG8508-RA
Protein status:BS06520.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06520.3prime Sequence

834 bp (833 high quality bases) assembled on 2005-12-03

> BS06520.3prime
ATGGTCTAGAAAGCTTTTATACCTCTAAATCCTCTAGGACGTCCTGAAGC
TCGGTAGCTACCCCCAGATCGTCGTCGTGATCTGATTTTCCCGAGTCCTC
AGCCGATTTATCCACATTGCCACCCACCAATCGATCAGTATCAATACCAA
ACTTGAGTTCAAAGGGAAAACTCAGCTTGGGCACCTCGAAAGTGTGCATG
TGGTAGTCGTAGTTGGTCTGCTCTTCTGGCGGAGCCGGGCAAGCGTGTTT
AGCTTGAGGATTTCTATCTAAACCAGTCTGATGCCCCTCTTGTTCGGGAT
GCATATAGATGGTGTGTCCCGCTCCCGTCGCATTGTAGGCGTCATTTTCG
GTGATACGCTTTGTGGAAGTATCAGGAGTTATTTCGGTATCGTCAATGAG
TATGTTTATATCAATGGGCACGAGCATGTAGGTTTCTCCAGTACTTTCAT
CGGTTTGAATTTGGCTTAACTGCTCGTAGTCCTCGTCTGAAATGCAATCC
AAATTTATTACATGGTCAGATTTCCAGCGAGCAATTTCCTTGGCGTCTGC
GCGTTGAAACTTATCCGATTCCGAAGATCCAGTAGCTACTCCATTTGAGG
TAATCTTAAATTTGTATAATAGCGGTTCTTTGAGCTGGACAAAAGCCTCT
GGCTTACCAGCCTCCACATAAACTTGCACTTTATCCAGTGCATTGGCTAT
GAAATCATCGTTTGATAGCTCATTCCGCTCCTGCTGGCTTTCGTCCTCTA
TTTCCTGTGCCAGCAACTGCTGAAGCTTGATCATTTGCTCCTTGGTCAGA
TTGAGATCCTTTAGACTCATGTCGACTGATAACT

BS06520.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG8508-PA 804 CG8508-RA 1..804 820..17 4020 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8508-RA 971 CG8508-RA 29..833 820..16 4025 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:47:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13185664..13186468 16..820 4025 100 Plus
Blast to na_te.dros performed on 2015-02-02 17:47:14 has no hits.

BS06520.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:43:33 Download gff for BS06520.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8508-PA 1..804 17..820 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:23:38 Download gff for BS06520.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8508-PA 1..804 17..820 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:07:08 Download gff for BS06520.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8508-RA 43..855 8..820 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:48:27 Download gff for BS06520.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8508-RA 29..841 8..820 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:48:27 Download gff for BS06520.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13185656..13186475 8..826 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:07:08 Download gff for BS06520.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9011378..9012197 8..826 99 <- Plus

BS06520.5prime Sequence

834 bp (800 high quality bases) assembled on 2005-12-03

> BS06520.5prime
GAAGTTATCAGTCGACATGAGTCTAAAGGATCTCAATCTGACCAAGGAGC
AAATGATCAAGCTTCAGCAGTTGCTGGCACAGGAAATAGAGGACGAAAGC
CAGCAGGAGCGGAATGAGCTATCAAACGATGATTTCATAGCCAATGCACT
GGATAAAGTGCAAGTTTATGTGGAGGCTGGTAAGCCAGAGGCTTTTGTCC
AGCTCAAAGAACCGCTATTATACAAATTTAAGATTACCTCAAATGGAGTA
GCTACTGGATCTTCGGAATCGGATAAGTTTCAACGCGCAGACGCCAAGGA
AATTGCTCGCTGGAAATCTGACCATGTAATAAATTTGGATTGCATTTCAG
ACGAGGACTACGAGCAGTTAAGCCAAATTCAAACCGATGAAAGTACTGGA
GAAACCTACATGCTCGTGCCCATTGATATAAACATACTCATTGACGATAC
CGAAATAACTCCTGATACTTCCACAAAGCGTATCACCGAAAATGACGCCT
ACAATGCGACGGGAGCGGGACACACCATCTATATGCATCCCGAACAAGAG
GGGCATCAGACTGGTTTAGATAGAAATCCTCAAGCTAAACACGCTTGCCC
GGCTCCGCCAGAAGAGCAGACCAACTACGACTACCACATGCACACTTTCG
AGGTGCCCAAGCTGAGTTTTCCCTTTGAACTCAAGTTTGGTATTGATACT
GATCGATTGGTGGGTGGCAATGTGGATAAATCGGCTGAGGACTCGGGAAA
ATCAGATCACGACGACGATCTGGGGGTAGCTACCGAGCTTCAGGACGTCC
TAGAGGATTTAGAGGTATAAAAGCTTTCTAGACC

BS06520.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG8508-PA 804 CG8508-RA 1..804 17..820 4020 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:50:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8508-RA 971 CG8508-RA 29..833 17..821 4025 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13185664..13186468 821..17 4025 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:50:00 has no hits.

BS06520.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:43:34 Download gff for BS06520.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8508-PA 1..804 17..820 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:23:39 Download gff for BS06520.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8508-PA 1..804 17..820 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:44:27 Download gff for BS06520.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8508-RA 43..855 17..829 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:05 Download gff for BS06520.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8508-RA 29..841 17..829 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:05 Download gff for BS06520.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13185656..13186475 11..829 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:44:27 Download gff for BS06520.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9011378..9012197 11..829 99 <- Minus

BS06520.complete Sequence

836 bp (836 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635529

> BS06520.complete
GAAGTTATCAGTCGACATGAGTCTAAAGGATCTCAATCTGACCAAGGAGC
AAATGATCAAGCTTCAGCAGTTGCTGGCACAGGAAATAGAGGACGAAAGC
CAGCAGGAGCGGAATGAGCTATCAAACGATGATTTCATAGCCAATGCACT
GGATAAAGTGCAAGTTTATGTGGAGGCTGGTAAGCCAGAGGCTTTTGTCC
AGCTCAAAGAACCGCTATTATACAAATTTAAGATTACCTCAAATGGAGTA
GCTACTGGATCTTCGGAATCGGATAAGTTTCAACGCGCAGACGCCAAGGA
AATTGCTCGCTGGAAATCTGACCATGTAATAAATTTGGATTGCATTTCAG
ACGAGGACTACGAGCAGTTAAGCCAAATTCAAACCGATGAAAGTACTGGA
GAAACCTACATGCTCGTGCCCATTGATATAAACATACTCATTGACGATAC
CGAAATAACTCCTGATACTTCCACAAAGCGTATCACCGAAAATGACGCCT
ACAATGCGACGGGAGCGGGACACACCATCTATATGCATCCCGAACAAGAG
GGGCATCAGACTGGTTTAGATAGAAATCCTCAAGCTAAACACGCTTGCCC
GGCTCCGCCAGAAGAGCAGACCAACTACGACTACCACATGCACACTTTCG
AGGTGCCCAAGCTGAGTTTTCCCTTTGAACTCAAGTTTGGTATTGATACT
GATCGATTGGTGGGTGGCAATGTGGATAAATCGGCTGAGGACTCGGGAAA
ATCAGATCACGACGACGATCTGGGGGTAGCTACCGAGCTTCAGGACGTCC
TAGAGGATTTAGAGGTATAAAAGCTTTCTAGACCAT

BS06520.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8508-RA 804 CG8508-PA 1..804 17..820 4020 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:30:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG8508-RA 971 CG8508-RA 29..833 17..821 4025 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:30:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13185664..13186468 821..17 4025 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:30:35 has no hits.

BS06520.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:41 Download gff for BS06520.complete
Subject Subject Range Query Range Percent Splice Strand
CG8508-RA 1..804 17..820 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:59 Download gff for BS06520.complete
Subject Subject Range Query Range Percent Splice Strand
CG8508-RA 43..855 17..829 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:39 Download gff for BS06520.complete
Subject Subject Range Query Range Percent Splice Strand
CG8508-RA 43..844 17..818 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:41 Download gff for BS06520.complete
Subject Subject Range Query Range Percent Splice Strand
CG8508-RA 43..855 17..829 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:42 Download gff for BS06520.complete
Subject Subject Range Query Range Percent Splice Strand
CG8508-RA 29..830 17..818 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:42 Download gff for BS06520.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13185667..13186468 17..818 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:39 Download gff for BS06520.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9011389..9012190 17..818 100   Minus

BS06520.pep Sequence

Translation from 16 to 819

> BS06520.pep
MSLKDLNLTKEQMIKLQQLLAQEIEDESQQERNELSNDDFIANALDKVQV
YVEAGKPEAFVQLKEPLLYKFKITSNGVATGSSESDKFQRADAKEIARWK
SDHVINLDCISDEDYEQLSQIQTDESTGETYMLVPIDINILIDDTEITPD
TSTKRITENDAYNATGAGHTIYMHPEQEGHQTGLDRNPQAKHACPAPPEE
QTNYDYHMHTFEVPKLSFPFELKFGIDTDRLVGGNVDKSAEDSGKSDHDD
DLGVATELQDVLEDLEV*

BS06520.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG8508-PA 267 CG8508-PA 1..267 1..267 1388 100 Plus