Clone BS06521 Report

Search the DGRC for BS06521

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:65
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptCG9312-RA
Protein status:BS06521.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06521.3prime Sequence

666 bp (665 high quality bases) assembled on 2005-12-03

> BS06521.3prime
ATGGTCTAGAAAGCTTTCAGCCGATGCGTATGTCGATGGCCAAGGGTGCC
TCTTCGGTGCTGGAAGAGGTGGGTGCCAAGGTAGTCGATCTGGTGGTGCT
GGTGGTTGTCGTGGTGGTGGTGCTGGTGCGTGAGGAAGGCGTTACTGGAG
CTGCGGGTGGTGGAGCTAAGCTGCTTGAGCTCGCTTGCTTTGTAAGCTCC
TTGATTCCCCCTTTATTTTCTTCAAAAGGCTCCAGTGGCGCTTCAAATGG
CCGCCGGTGCTCCTCATATTCCGGTGGTCCAAAGGCATTTGGAAACGGTT
GGAAGTCATGTGGCTCGAATCTGTGGTGGTGGCCTTGGGGAGGTGGTCCT
CCATGCTCAAATCCAAACCCGAATCTGGCAGGGTGATGGCAGTCTGGACC
CGGAAAATGGTGATCCCAGTGCCGCTTATGGTGTCTGTGCCCATGGTAAT
TGCCATCCTCGTGATGGCGACGATGCCGATTGTGCTGGACGTGGACCTGG
CTAACAACGGGCGACGATTCCTCGGCCAATAAATCGTCACTGGTGAAGGC
AGCATTCTCGATGCCTGGGAACGGAGCAGCCTGGAGGAGCTGCAGACTCT
GGGTGCTTATCACAGCGAACAGCGCCAGACGGGCGGCAACTGAGGCTAAC
ATGTCGACTGATAACT

BS06521.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG9312-PA 636 CG9312-RA 1..636 652..17 3180 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:09:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG9312-RA 807 CG9312-RA 105..740 652..17 3180 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13766106..13766437 551..220 1660 100 Minus
3R 32079331 3R 13766832..13767036 221..17 1025 100 Minus
3R 32079331 3R 13765945..13766021 628..552 385 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:09:20 has no hits.

BS06521.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:43:35 Download gff for BS06521.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9312-PA 1..636 17..652 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:23:40 Download gff for BS06521.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9312-PA 1..636 17..652 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:48:36 Download gff for BS06521.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9312-RA 101..740 17..660 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:22:38 Download gff for BS06521.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9312-RA 101..740 17..660 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:22:38 Download gff for BS06521.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13766106..13766437 220..551 100 -> Minus
3R 13765945..13766021 552..628 100 -> Minus
3R 13766834..13767036 17..219 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:48:36 Download gff for BS06521.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9591667..9591743 552..628 100 -> Minus
arm_3R 9591828..9592159 220..551 100 -> Minus
arm_3R 9592556..9592758 17..219 100   Minus

BS06521.5prime Sequence

666 bp (665 high quality bases) assembled on 2005-12-03

> BS06521.5prime
GAAGTTATCAGTCGACATGTTAGCCTCAGTTGCCGCCCGTCTGGCGCTGT
TCGCTGTGATAAGCACCCAGAGTCTGCAGCTCCTCCAGGCTGCTCCGTTC
CCAGGCATCGAGAATGCTGCCTTCACCAGTGACGATTTATTGGCCGAGGA
ATCGTCGCCCGTTGTTAGCCAGGTCCACGTCCAGCACAATCGGCATCGTC
GCCATCACGAGGATGGCAATTACCATGGGCACAGACACCATAAGCGGCAC
TGGGATCACCATTTTCCGGGTCCAGACTGCCATCACCCTGCCAGATTCGG
GTTTGGATTTGAGCATGGAGGACCACCTCCCCAAGGCCACCACCACAGAT
TCGAGCCACATGACTTCCAACCGTTTCCAAATGCCTTTGGACCACCGGAA
TATGAGGAGCACCGGCGGCCATTTGAAGCGCCACTGGAGCCTTTTGAAGA
AAATAAAGGGGGAATCAAGGAGCTTACAAAGCAAGCGAGCTCAAGCAGCT
TAGCTCCACCACCCGCAGCTCCAGTAACGCCTTCCTCACGCACCAGCACC
ACCACCACGACAACCACCAGCACCACCAGATCGACTACCTTGGCACCCAC
CTCTTCCAGCACCGAAGAGGCACCCTTGGCCATCGACATACGCATCGGCT
GAAAGCTTTCTAGACC

BS06521.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG9312-PA 636 CG9312-RA 1..636 17..652 3180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:35:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG9312-RA 807 CG9312-RA 105..740 17..652 3180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:35:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13766106..13766437 118..449 1660 100 Plus
3R 32079331 3R 13766832..13767036 448..652 1025 100 Plus
3R 32079331 3R 13765945..13766021 41..117 385 100 Plus
Blast to na_te.dros performed on 2015-02-04 02:35:25 has no hits.

BS06521.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:43:36 Download gff for BS06521.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9312-PA 1..636 17..652 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:23:41 Download gff for BS06521.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9312-PA 1..636 17..652 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:52:01 Download gff for BS06521.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9312-RA 101..740 9..652 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:37:46 Download gff for BS06521.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9312-RA 101..740 9..652 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:37:46 Download gff for BS06521.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13765945..13766021 41..117 100 -> Plus
3R 13766106..13766437 118..449 100 -> Plus
3R 13766834..13767036 450..652 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:52:01 Download gff for BS06521.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9591667..9591743 41..117 100 -> Plus
arm_3R 9591828..9592159 118..449 100 -> Plus
arm_3R 9592556..9592758 450..652 100   Plus

BS06521.complete Sequence

668 bp (668 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635530

> BS06521.complete
GAAGTTATCAGTCGACATGTTAGCCTCAGTTGCCGCCCGTCTGGCGCTGT
TCGCTGTGATAAGCACCCAGAGTCTGCAGCTCCTCCAGGCTGCTCCGTTC
CCAGGCATCGAGAATGCTGCCTTCACCAGTGACGATTTATTGGCCGAGGA
ATCGTCGCCCGTTGTTAGCCAGGTCCACGTCCAGCACAATCGGCATCGTC
GCCATCACGAGGATGGCAATTACCATGGGCACAGACACCATAAGCGGCAC
TGGGATCACCATTTTCCGGGTCCAGACTGCCATCACCCTGCCAGATTCGG
GTTTGGATTTGAGCATGGAGGACCACCTCCCCAAGGCCACCACCACAGAT
TCGAGCCACATGACTTCCAACCGTTTCCAAATGCCTTTGGACCACCGGAA
TATGAGGAGCACCGGCGGCCATTTGAAGCGCCACTGGAGCCTTTTGAAGA
AAATAAAGGGGGAATCAAGGAGCTTACAAAGCAAGCGAGCTCAAGCAGCT
TAGCTCCACCACCCGCAGCTCCAGTAACGCCTTCCTCACGCACCAGCACC
ACCACCACGACAACCACCAGCACCACCAGATCGACTACCTTGGCACCCAC
CTCTTCCAGCACCGAAGAGGCACCCTTGGCCATCGACATACGCATCGGCT
GAAAGCTTTCTAGACCAT

BS06521.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG9312-RA 636 CG9312-PA 1..636 17..652 3180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG9312-RA 807 CG9312-RA 105..740 17..652 3180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13766106..13766437 118..449 1660 100 Plus
3R 32079331 3R 13766832..13767036 448..652 1025 100 Plus
3R 32079331 3R 13765945..13766021 41..117 385 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:47:25 has no hits.

BS06521.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:42 Download gff for BS06521.complete
Subject Subject Range Query Range Percent Splice Strand
CG9312-RA 1..636 17..652 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:00 Download gff for BS06521.complete
Subject Subject Range Query Range Percent Splice Strand
CG9312-RA 82..721 9..652 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:35 Download gff for BS06521.complete
Subject Subject Range Query Range Percent Splice Strand
CG9312-RA 110..739 22..651 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:43 Download gff for BS06521.complete
Subject Subject Range Query Range Percent Splice Strand
CG9312-RA 82..721 9..652 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:58 Download gff for BS06521.complete
Subject Subject Range Query Range Percent Splice Strand
CG9312-RA 110..739 22..651 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:58 Download gff for BS06521.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13765865..13765883 22..40 100 -> Plus
3R 13765945..13766021 41..117 100 -> Plus
3R 13766106..13766437 118..449 100 -> Plus
3R 13766834..13767035 450..651 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:35 Download gff for BS06521.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9591828..9592159 118..449 100 -> Plus
arm_3R 9591587..9591605 22..40 100 -> Plus
arm_3R 9591667..9591743 41..117 100 -> Plus
arm_3R 9592556..9592757 450..651 100   Plus

BS06521.pep Sequence

Translation from 16 to 651

> BS06521.pep
MLASVAARLALFAVISTQSLQLLQAAPFPGIENAAFTSDDLLAEESSPVV
SQVHVQHNRHRRHHEDGNYHGHRHHKRHWDHHFPGPDCHHPARFGFGFEH
GGPPPQGHHHRFEPHDFQPFPNAFGPPEYEEHRRPFEAPLEPFEENKGGI
KELTKQASSSSLAPPPAAPVTPSSRTSTTTTTTTSTTRSTTLAPTSSSTE
EAPLAIDIRIG*

BS06521.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG9312-PA 211 CG9312-PA 1..211 1..211 1150 100 Plus