Clone BS06523 Report

Search the DGRC for BS06523

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:65
Well:23
Vector:pDNR-Dual
Associated Gene/Transcriptdj-1beta-RA
Protein status:BS06523.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06523.3prime Sequence

648 bp (647 high quality bases) assembled on 2005-12-03

> BS06523.3prime
ATGGTCTAGAAAGCTTTTAGTTGTAGGCCACAAGAAGACCCTTGGCCACC
TCCTGGACTTTCTCCTTGCCCGCCAGCTCCTCGGCGATTTTGAGGGCGAA
CTCGTAGGCGGTGCCAGGACCTCGACTGGTGATCAGATTGCCATCCTTGA
CCACCGTCTTGTCGTCCACATAGCTATAGTTATTCACCAGCTGGGGCTTC
ATTGAGGGATACGAGGTGAGGGATTTCCCGGAGGCGACGCCGTGCTTGGC
CAAAACGGTGGGCGCGGCACAGATGGCGGCGATGAGTCCGCCACCAGACT
CCTGGCTGCGCAGCAAGTCACCGACCAGCGAGGACTCCCCCATGGCATTG
GAGCCACCCAGTCCGCCGGGCAGCACCACCACATCGAACTTATCCGAGGC
AACCTGGGCCAGCGAGGTGTCCGGCAGGATCTGCACATCCCGCGAGCACT
TCACCGCTTCCCCGCCATTCAAACCGGCTACGGTGACCTTGATGCCCGCC
CTTCTCAGAACGTCGGCGGCTATGATGAACTCCATCTCCTCCGCTCCGGG
AGCCAAAATCACCAGCGCGCTTTTCGACATCTTGGTAAACTTAGAAAAGT
GCCTTGAAATTTGAGGAAATCCAAAGAAAACCATGTCGACTGATAACT

BS06523.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG1349-PA 618 dj-1beta-RA 1..618 634..17 3090 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
dj-1beta-RA 733 CG1349-RA 27..645 635..17 3095 100 Minus
DJ-1alpha-RA 735 CG6646-RA 115..581 574..111 305 72.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:32:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30807348..30807671 493..170 1605 99.7 Minus
3R 32079331 3R 30807732..30807890 175..17 795 100 Minus
3R 32079331 3R 30807143..30807284 635..494 710 100 Minus
Blast to na_te.dros performed on 2015-02-06 12:32:33 has no hits.

BS06523.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:43:40 Download gff for BS06523.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1349-PA 1..618 17..634 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:23:45 Download gff for BS06523.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1349-PA 1..618 17..634 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:44:32 Download gff for BS06523.3prime
Subject Subject Range Query Range Percent Splice Strand
dj-1beta-RA 21..652 10..645 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:52:41 Download gff for BS06523.3prime
Subject Subject Range Query Range Percent Splice Strand
dj-1beta-RA 21..652 10..645 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:52:41 Download gff for BS06523.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30807137..30807284 494..645 97 -> Minus
3R 30807348..30807667 174..493 100 -> Minus
3R 30807734..30807897 10..173 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:44:32 Download gff for BS06523.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26632859..26633006 494..645 97 -> Minus
arm_3R 26633070..26633389 174..493 100 -> Minus
arm_3R 26633456..26633619 10..173 98   Minus

BS06523.5prime Sequence

648 bp (647 high quality bases) assembled on 2005-12-03

> BS06523.5prime
GAAGTTATCAGTCGACATGGTTTTCTTTGGATTTCCTCAAATTTCAAGGC
ACTTTTCTAAGTTTACCAAGATGTCGAAAAGCGCGCTGGTGATTTTGGCT
CCCGGAGCGGAGGAGATGGAGTTCATCATAGCCGCCGACGTTCTGAGAAG
GGCGGGCATCAAGGTCACCGTAGCCGGTTTGAATGGCGGGGAAGCGGTGA
AGTGCTCGCGGGATGTGCAGATCCTGCCGGACACCTCGCTGGCCCAGGTT
GCCTCGGATAAGTTCGATGTGGTGGTGCTGCCCGGCGGACTGGGTGGCTC
CAATGCCATGGGGGAGTCCTCGCTGGTCGGTGACTTGCTGCGCAGCCAGG
AGTCTGGTGGCGGACTCATCGCCGCCATCTGTGCCGCGCCCACCGTTTTG
GCCAAGCACGGCGTCGCCTCCGGGAAATCCCTCACCTCGTATCCCTCAAT
GAAGCCCCAGCTGGTGAATAACTATAGCTATGTGGACGACAAGACGGTGG
TCAAGGATGGCAATCTGATCACCAGTCGAGGTCCTGGCACCGCCTACGAG
TTCGCCCTCAAAATCGCCGAGGAGCTGGCGGGCAAGGAGAAAGTCCAGGA
GGTGGCCAAGGGTCTTCTTGTGGCCTACAACTAAAAGCTTTCTAGACC

BS06523.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG1349-PA 618 dj-1beta-RA 1..618 17..634 3090 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
dj-1beta-RA 733 CG1349-RA 27..645 16..634 3095 100 Plus
DJ-1alpha-RA 735 CG6646-RA 115..581 77..540 305 72.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:33:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30807348..30807671 158..481 1605 99.7 Plus
3R 32079331 3R 30807732..30807890 476..634 795 100 Plus
3R 32079331 3R 30807143..30807284 16..157 710 100 Plus
Blast to na_te.dros performed on 2015-02-04 02:33:21 has no hits.

BS06523.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:43:41 Download gff for BS06523.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1349-PA 1..618 17..634 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:23:47 Download gff for BS06523.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1349-PA 1..618 17..634 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:51:41 Download gff for BS06523.5prime
Subject Subject Range Query Range Percent Splice Strand
dj-1beta-RA 21..652 6..641 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:37:29 Download gff for BS06523.5prime
Subject Subject Range Query Range Percent Splice Strand
dj-1beta-RA 21..652 6..641 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:37:29 Download gff for BS06523.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30807137..30807284 6..157 97 -> Plus
3R 30807348..30807667 158..477 100 -> Plus
3R 30807734..30807897 478..641 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:51:41 Download gff for BS06523.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26632859..26633006 6..157 97 -> Plus
arm_3R 26633070..26633389 158..477 100 -> Plus
arm_3R 26633456..26633619 478..641 98   Plus

BS06523.complete Sequence

650 bp (650 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635531

> BS06523.complete
GAAGTTATCAGTCGACATGGTTTTCTTTGGATTTCCTCAAATTTCAAGGC
ACTTTTCTAAGTTTACCAAGATGTCGAAAAGCGCGCTGGTGATTTTGGCT
CCCGGAGCGGAGGAGATGGAGTTCATCATAGCCGCCGACGTTCTGAGAAG
GGCGGGCATCAAGGTCACCGTAGCCGGTTTGAATGGCGGGGAAGCGGTGA
AGTGCTCGCGGGATGTGCAGATCCTGCCGGACACCTCGCTGGCCCAGGTT
GCCTCGGATAAGTTCGATGTGGTGGTGCTGCCCGGCGGACTGGGTGGCTC
CAATGCCATGGGGGAGTCCTCGCTGGTCGGTGACTTGCTGCGCAGCCAGG
AGTCTGGTGGCGGACTCATCGCCGCCATCTGTGCCGCGCCCACCGTTTTG
GCCAAGCACGGCGTCGCCTCCGGGAAATCCCTCACCTCGTATCCCTCAAT
GAAGCCCCAGCTGGTGAATAACTATAGCTATGTGGACGACAAGACGGTGG
TCAAGGATGGCAATCTGATCACCAGTCGAGGTCCTGGCACCGCCTACGAG
TTCGCCCTCAAAATCGCCGAGGAGCTGGCGGGCAAGGAGAAAGTCCAGGA
GGTGGCCAAGGGTCTTCTTGTGGCCTACAACTAAAAGCTTTCTAGACCAT

BS06523.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:36:49
Subject Length Description Subject Range Query Range Score Percent Strand
dj-1beta-RA 618 CG1349-PA 1..618 17..634 3090 100 Plus
DJ-1alpha-RA 654 CG6646-PA 353..557 336..540 275 75.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:36:50
Subject Length Description Subject Range Query Range Score Percent Strand
dj-1beta-RA 733 CG1349-RA 27..645 16..634 3095 100 Plus
DJ-1alpha-RA 735 CG6646-RA 377..581 336..540 275 75.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30807348..30807671 158..481 1605 99.7 Plus
3R 32079331 3R 30807732..30807890 476..634 795 100 Plus
3R 32079331 3R 30807143..30807284 16..157 710 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:36:48 has no hits.

BS06523.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:44 Download gff for BS06523.complete
Subject Subject Range Query Range Percent Splice Strand
dj-1beta-RA 1..618 17..634 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:57:14 Download gff for BS06523.complete
Subject Subject Range Query Range Percent Splice Strand
dj-1beta-RA 12..643 6..641 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:42 Download gff for BS06523.complete
Subject Subject Range Query Range Percent Splice Strand
dj-1beta-RA 28..643 17..632 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:44 Download gff for BS06523.complete
Subject Subject Range Query Range Percent Splice Strand
dj-1beta-RA 12..643 6..641 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:15 Download gff for BS06523.complete
Subject Subject Range Query Range Percent Splice Strand
dj-1beta-RA 28..643 17..632 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:15 Download gff for BS06523.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30807144..30807284 17..157 100 -> Plus
3R 30807348..30807667 158..477 100 -> Plus
3R 30807734..30807888 478..632 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:42 Download gff for BS06523.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26632866..26633006 17..157 100 -> Plus
arm_3R 26633070..26633389 158..477 100 -> Plus
arm_3R 26633456..26633610 478..632 100   Plus

BS06523.pep Sequence

Translation from 16 to 633

> BS06523.pep
MVFFGFPQISRHFSKFTKMSKSALVILAPGAEEMEFIIAADVLRRAGIKV
TVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGSNAMGE
SSLVGDLLRSQESGGGLIAAICAAPTVLAKHGVASGKSLTSYPSMKPQLV
NNYSYVDDKTVVKDGNLITSRGPGTAYEFALKIAEELAGKEKVQEVAKGL
LVAYN*

BS06523.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:53
Subject Length Description Subject Range Query Range Score Percent Strand
dj-1beta-PA 205 CG1349-PA 1..205 1..205 1018 100 Plus
DJ-1alpha-PA 217 CG6646-PA 18..215 8..204 622 64.6 Plus