Clone Sequence Records
BS06523.3prime Sequence
648 bp (647 high quality bases) assembled on 2005-12-03
> BS06523.3prime
ATGGTCTAGAAAGCTTTTAGTTGTAGGCCACAAGAAGACCCTTGGCCACC
TCCTGGACTTTCTCCTTGCCCGCCAGCTCCTCGGCGATTTTGAGGGCGAA
CTCGTAGGCGGTGCCAGGACCTCGACTGGTGATCAGATTGCCATCCTTGA
CCACCGTCTTGTCGTCCACATAGCTATAGTTATTCACCAGCTGGGGCTTC
ATTGAGGGATACGAGGTGAGGGATTTCCCGGAGGCGACGCCGTGCTTGGC
CAAAACGGTGGGCGCGGCACAGATGGCGGCGATGAGTCCGCCACCAGACT
CCTGGCTGCGCAGCAAGTCACCGACCAGCGAGGACTCCCCCATGGCATTG
GAGCCACCCAGTCCGCCGGGCAGCACCACCACATCGAACTTATCCGAGGC
AACCTGGGCCAGCGAGGTGTCCGGCAGGATCTGCACATCCCGCGAGCACT
TCACCGCTTCCCCGCCATTCAAACCGGCTACGGTGACCTTGATGCCCGCC
CTTCTCAGAACGTCGGCGGCTATGATGAACTCCATCTCCTCCGCTCCGGG
AGCCAAAATCACCAGCGCGCTTTTCGACATCTTGGTAAACTTAGAAAAGT
GCCTTGAAATTTGAGGAAATCCAAAGAAAACCATGTCGACTGATAACT
BS06523.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1349-PA | 618 | dj-1beta-RA | 1..618 | 634..17 | 3090 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:32:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dj-1beta-RA | 733 | CG1349-RA | 27..645 | 635..17 | 3095 | 100 | Minus |
DJ-1alpha-RA | 735 | CG6646-RA | 115..581 | 574..111 | 305 | 72.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:32:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30807348..30807671 | 493..170 | 1605 | 99.7 | Minus |
3R | 32079331 | 3R | 30807732..30807890 | 175..17 | 795 | 100 | Minus |
3R | 32079331 | 3R | 30807143..30807284 | 635..494 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 12:32:33 has no hits.
BS06523.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:43:40 Download gff for
BS06523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1349-PA | 1..618 | 17..634 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:23:45 Download gff for
BS06523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1349-PA | 1..618 | 17..634 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:44:32 Download gff for
BS06523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dj-1beta-RA | 21..652 | 10..645 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:52:41 Download gff for
BS06523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dj-1beta-RA | 21..652 | 10..645 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:52:41 Download gff for
BS06523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30807137..30807284 | 494..645 | 97 | -> | Minus |
3R | 30807348..30807667 | 174..493 | 100 | -> | Minus |
3R | 30807734..30807897 | 10..173 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:44:32 Download gff for
BS06523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26632859..26633006 | 494..645 | 97 | -> | Minus |
arm_3R | 26633070..26633389 | 174..493 | 100 | -> | Minus |
arm_3R | 26633456..26633619 | 10..173 | 98 | | Minus |
BS06523.5prime Sequence
648 bp (647 high quality bases) assembled on 2005-12-03
> BS06523.5prime
GAAGTTATCAGTCGACATGGTTTTCTTTGGATTTCCTCAAATTTCAAGGC
ACTTTTCTAAGTTTACCAAGATGTCGAAAAGCGCGCTGGTGATTTTGGCT
CCCGGAGCGGAGGAGATGGAGTTCATCATAGCCGCCGACGTTCTGAGAAG
GGCGGGCATCAAGGTCACCGTAGCCGGTTTGAATGGCGGGGAAGCGGTGA
AGTGCTCGCGGGATGTGCAGATCCTGCCGGACACCTCGCTGGCCCAGGTT
GCCTCGGATAAGTTCGATGTGGTGGTGCTGCCCGGCGGACTGGGTGGCTC
CAATGCCATGGGGGAGTCCTCGCTGGTCGGTGACTTGCTGCGCAGCCAGG
AGTCTGGTGGCGGACTCATCGCCGCCATCTGTGCCGCGCCCACCGTTTTG
GCCAAGCACGGCGTCGCCTCCGGGAAATCCCTCACCTCGTATCCCTCAAT
GAAGCCCCAGCTGGTGAATAACTATAGCTATGTGGACGACAAGACGGTGG
TCAAGGATGGCAATCTGATCACCAGTCGAGGTCCTGGCACCGCCTACGAG
TTCGCCCTCAAAATCGCCGAGGAGCTGGCGGGCAAGGAGAAAGTCCAGGA
GGTGGCCAAGGGTCTTCTTGTGGCCTACAACTAAAAGCTTTCTAGACC
BS06523.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1349-PA | 618 | dj-1beta-RA | 1..618 | 17..634 | 3090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:33:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dj-1beta-RA | 733 | CG1349-RA | 27..645 | 16..634 | 3095 | 100 | Plus |
DJ-1alpha-RA | 735 | CG6646-RA | 115..581 | 77..540 | 305 | 72.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:33:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30807348..30807671 | 158..481 | 1605 | 99.7 | Plus |
3R | 32079331 | 3R | 30807732..30807890 | 476..634 | 795 | 100 | Plus |
3R | 32079331 | 3R | 30807143..30807284 | 16..157 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 02:33:21 has no hits.
BS06523.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:43:41 Download gff for
BS06523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1349-PA | 1..618 | 17..634 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:23:47 Download gff for
BS06523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1349-PA | 1..618 | 17..634 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:51:41 Download gff for
BS06523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dj-1beta-RA | 21..652 | 6..641 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:37:29 Download gff for
BS06523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dj-1beta-RA | 21..652 | 6..641 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:37:29 Download gff for
BS06523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30807137..30807284 | 6..157 | 97 | -> | Plus |
3R | 30807348..30807667 | 158..477 | 100 | -> | Plus |
3R | 30807734..30807897 | 478..641 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:51:41 Download gff for
BS06523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26632859..26633006 | 6..157 | 97 | -> | Plus |
arm_3R | 26633070..26633389 | 158..477 | 100 | -> | Plus |
arm_3R | 26633456..26633619 | 478..641 | 98 | | Plus |
BS06523.complete Sequence
650 bp (650 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635531
> BS06523.complete
GAAGTTATCAGTCGACATGGTTTTCTTTGGATTTCCTCAAATTTCAAGGC
ACTTTTCTAAGTTTACCAAGATGTCGAAAAGCGCGCTGGTGATTTTGGCT
CCCGGAGCGGAGGAGATGGAGTTCATCATAGCCGCCGACGTTCTGAGAAG
GGCGGGCATCAAGGTCACCGTAGCCGGTTTGAATGGCGGGGAAGCGGTGA
AGTGCTCGCGGGATGTGCAGATCCTGCCGGACACCTCGCTGGCCCAGGTT
GCCTCGGATAAGTTCGATGTGGTGGTGCTGCCCGGCGGACTGGGTGGCTC
CAATGCCATGGGGGAGTCCTCGCTGGTCGGTGACTTGCTGCGCAGCCAGG
AGTCTGGTGGCGGACTCATCGCCGCCATCTGTGCCGCGCCCACCGTTTTG
GCCAAGCACGGCGTCGCCTCCGGGAAATCCCTCACCTCGTATCCCTCAAT
GAAGCCCCAGCTGGTGAATAACTATAGCTATGTGGACGACAAGACGGTGG
TCAAGGATGGCAATCTGATCACCAGTCGAGGTCCTGGCACCGCCTACGAG
TTCGCCCTCAAAATCGCCGAGGAGCTGGCGGGCAAGGAGAAAGTCCAGGA
GGTGGCCAAGGGTCTTCTTGTGGCCTACAACTAAAAGCTTTCTAGACCAT
BS06523.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:36:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dj-1beta-RA | 618 | CG1349-PA | 1..618 | 17..634 | 3090 | 100 | Plus |
DJ-1alpha-RA | 654 | CG6646-PA | 353..557 | 336..540 | 275 | 75.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:36:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dj-1beta-RA | 733 | CG1349-RA | 27..645 | 16..634 | 3095 | 100 | Plus |
DJ-1alpha-RA | 735 | CG6646-RA | 377..581 | 336..540 | 275 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:36:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30807348..30807671 | 158..481 | 1605 | 99.7 | Plus |
3R | 32079331 | 3R | 30807732..30807890 | 476..634 | 795 | 100 | Plus |
3R | 32079331 | 3R | 30807143..30807284 | 16..157 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:36:48 has no hits.
BS06523.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:44 Download gff for
BS06523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dj-1beta-RA | 1..618 | 17..634 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:57:14 Download gff for
BS06523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dj-1beta-RA | 12..643 | 6..641 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:42 Download gff for
BS06523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dj-1beta-RA | 28..643 | 17..632 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:44 Download gff for
BS06523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dj-1beta-RA | 12..643 | 6..641 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:15 Download gff for
BS06523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dj-1beta-RA | 28..643 | 17..632 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:15 Download gff for
BS06523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30807144..30807284 | 17..157 | 100 | -> | Plus |
3R | 30807348..30807667 | 158..477 | 100 | -> | Plus |
3R | 30807734..30807888 | 478..632 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:42 Download gff for
BS06523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26632866..26633006 | 17..157 | 100 | -> | Plus |
arm_3R | 26633070..26633389 | 158..477 | 100 | -> | Plus |
arm_3R | 26633456..26633610 | 478..632 | 100 | | Plus |
BS06523.pep Sequence
Translation from 16 to 633
> BS06523.pep
MVFFGFPQISRHFSKFTKMSKSALVILAPGAEEMEFIIAADVLRRAGIKV
TVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGSNAMGE
SSLVGDLLRSQESGGGLIAAICAAPTVLAKHGVASGKSLTSYPSMKPQLV
NNYSYVDDKTVVKDGNLITSRGPGTAYEFALKIAEELAGKEKVQEVAKGL
LVAYN*
BS06523.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dj-1beta-PA | 205 | CG1349-PA | 1..205 | 1..205 | 1018 | 100 | Plus |
DJ-1alpha-PA | 217 | CG6646-PA | 18..215 | 8..204 | 622 | 64.6 | Plus |