Clone BS06526 Report

Search the DGRC for BS06526

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:65
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptNacalpha-RA
Protein status:BS06526.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06526.3prime Sequence

684 bp (683 high quality bases) assembled on 2005-12-03

> BS06526.3prime
ATGGTCTAGAAAGCTTCTAAAGCATAGTAAGCTCCATGATGGCGTTGACG
ATGTCATTGTTGTTGTTCTTCAGAGCCTTGATCGCCTTGGCCCTCGTCGT
GTTGGCCTGCGTGATGACCAGCTCGATATCCTTCTCATCCACGCCGGTGT
CATCGACATCCTCCTCGTCTTCCTCGGCAATGGGGGCCACCGATGTGGTG
GCGCCCACGCTGTCTGCAGCGCCAGCAGCCTCCGGGGCCTTGAACTTCTC
GGCGGCAGCCACCTGGGCCTGTTGCGACAGATCCTCGATCTTGGCCTCAC
CGAACACGATGTAGGTGTCGCTGTGGGGGTTCTTGTACACATCTGGGTTG
TTGATCACGAACAGGATGTTCTTCGACTTCCTGATCGTCACCCGGTTGAC
GCCCTGGATCTGCTTAAGTCCCAGCTTCAGCATGATCTTCCTGGCCTTTT
TCTCGCCGCGCGATTGCTTGGCCTTTGAGACGAGGTCGATGGGCAGACCG
GTGGCACCTCCACCCAGCTGTGTGGTGGCCGCTACAGCCTCCTCCAGACC
AGGCATGCCACCATCGGAGTCGCTATCACTGCCATCATCCTCAACGCGGA
CGTCCTCGGGTTTCGCCTCAGCGGAGGTGGAGGGCGCAGCCTCGCTCTTG
ATTTCGGTCAGTTCGGGCATGTCGACTGATAACT

BS06526.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG8759-PB 654 Nacalpha-RB 1..654 670..17 3270 100 Minus
CG8759-PC 654 Nacalpha-RC 1..654 670..17 3270 100 Minus
CG8759-PA 654 Nacalpha-RA 1..654 670..17 3270 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
Nacalpha-RD 832 CG8759-RD 10..664 670..16 3275 100 Minus
Nacalpha-RA 895 CG8759-RA 73..727 670..16 3275 100 Minus
Nacalpha-RC 865 CG8759-RC 43..697 670..16 3275 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:51:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12759861..12760515 16..670 3275 100 Plus
3R 32079331 3R 1516474..1516532 80..22 250 94.9 Minus
Blast to na_te.dros performed on 2015-01-31 16:51:38 has no hits.

BS06526.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:43:44 Download gff for BS06526.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8759-PA 1..654 17..670 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:23:51 Download gff for BS06526.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8759-PA 1..654 17..670 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:27:59 Download gff for BS06526.3prime
Subject Subject Range Query Range Percent Splice Strand
Nacalpha-RB 202..863 8..670 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:45:24 Download gff for BS06526.3prime
Subject Subject Range Query Range Percent Splice Strand
Nacalpha-RC 43..704 8..670 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:45:24 Download gff for BS06526.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12759854..12760524 8..678 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:27:59 Download gff for BS06526.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8647359..8648029 8..678 98   Plus

BS06526.5prime Sequence

684 bp (683 high quality bases) assembled on 2005-12-03

> BS06526.5prime
GAAGTTATCAGTCGACATGCCCGAACTGACCGAAATCAAGAGCGAGGCTG
CGCCCTCCACCTCCGCTGAGGCGAAACCCGAGGACGTCCGCGTTGAGGAT
GATGGCAGTGATAGCGACTCCGATGGTGGCATGCCTGGTCTGGAGGAGGC
TGTAGCGGCCACCACACAGCTGGGTGGAGGTGCCACCGGTCTGCCCATCG
ACCTCGTCTCAAAGGCCAAGCAATCGCGCGGCGAGAAAAAGGCCAGGAAG
ATCATGCTGAAGCTGGGACTTAAGCAGATCCAGGGCGTCAACCGGGTGAC
GATCAGGAAGTCGAAGAACATCCTGTTCGTGATCAACAACCCAGATGTGT
ACAAGAACCCCCACAGCGACACCTACATCGTGTTCGGTGAGGCCAAGATC
GAGGATCTGTCGCAACAGGCCCAGGTGGCTGCCGCCGAGAAGTTCAAGGC
CCCGGAGGCTGCTGGCGCTGCAGACAGCGTGGGCGCCACCACATCGGTGG
CCCCCATTGCCGAGGAAGACGAGGAGGATGTCGATGACACCGGCGTGGAT
GAGAAGGATATCGAGCTGGTCATCACGCAGGCCAACACGACGAGGGCCAA
GGCGATCAAGGCTCTGAAGAACAACAACAATGACATCGTCAACGCCATCA
TGGAGCTTACTATGCTTTAGAAGCTTTCTAGACC

BS06526.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG8759-PB 654 Nacalpha-RB 1..654 17..670 3270 100 Plus
CG8759-PC 654 Nacalpha-RC 1..654 17..670 3270 100 Plus
CG8759-PA 654 Nacalpha-RA 1..654 17..670 3270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
Nacalpha-RD 832 CG8759-RD 10..664 17..671 3275 100 Plus
Nacalpha-RA 895 CG8759-RA 73..727 17..671 3275 100 Plus
Nacalpha-RC 865 CG8759-RC 43..697 17..671 3275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12759861..12760515 671..17 3275 100 Minus
3R 32079331 3R 1516474..1516532 607..665 250 94.9 Plus
Blast to na_te.dros performed on 2015-02-11 10:34:16 has no hits.

BS06526.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:43:45 Download gff for BS06526.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8759-PA 1..654 17..670 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:23:52 Download gff for BS06526.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8759-PA 1..654 17..670 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:23:10 Download gff for BS06526.5prime
Subject Subject Range Query Range Percent Splice Strand
Nacalpha-RB 202..863 17..679 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:27:00 Download gff for BS06526.5prime
Subject Subject Range Query Range Percent Splice Strand
Nacalpha-RC 43..704 17..679 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:27:00 Download gff for BS06526.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12759854..12760524 9..679 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:23:10 Download gff for BS06526.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8647359..8648029 9..679 98   Minus

BS06526.complete Sequence

686 bp (686 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635532

> BS06526.complete
GAAGTTATCAGTCGACATGCCCGAACTGACCGAAATCAAGAGCGAGGCTG
CGCCCTCCACCTCCGCTGAGGCGAAACCCGAGGACGTCCGCGTTGAGGAT
GATGGCAGTGATAGCGACTCCGATGGTGGCATGCCTGGTCTGGAGGAGGC
TGTAGCGGCCACCACACAGCTGGGTGGAGGTGCCACCGGTCTGCCCATCG
ACCTCGTCTCAAAGGCCAAGCAATCGCGCGGCGAGAAAAAGGCCAGGAAG
ATCATGCTGAAGCTGGGACTTAAGCAGATCCAGGGCGTCAACCGGGTGAC
GATCAGGAAGTCGAAGAACATCCTGTTCGTGATCAACAACCCAGATGTGT
ACAAGAACCCCCACAGCGACACCTACATCGTGTTCGGTGAGGCCAAGATC
GAGGATCTGTCGCAACAGGCCCAGGTGGCTGCCGCCGAGAAGTTCAAGGC
CCCGGAGGCTGCTGGCGCTGCAGACAGCGTGGGCGCCACCACATCGGTGG
CCCCCATTGCCGAGGAAGACGAGGAGGATGTCGATGACACCGGCGTGGAT
GAGAAGGATATCGAGCTGGTCATCACGCAGGCCAACACGACGAGGGCCAA
GGCGATCAAGGCTCTGAAGAACAACAACAATGACATCGTCAACGCCATCA
TGGAGCTTACTATGCTTTAGAAGCTTTCTAGACCAT

BS06526.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
Nacalpha-RD 654 CG8759-PD 1..654 17..670 3270 100 Plus
Nacalpha-RA 654 CG8759-PA 1..654 17..670 3270 100 Plus
Nacalpha-RC 654 CG8759-PC 1..654 17..670 3270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
Nacalpha-RD 832 CG8759-RD 10..664 17..671 3275 100 Plus
Nacalpha-RA 895 CG8759-RA 73..727 17..671 3275 100 Plus
Nacalpha-RC 865 CG8759-RC 43..697 17..671 3275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:26:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12759861..12760515 671..17 3275 100 Minus
3R 32079331 3R 1516474..1516532 607..665 250 94.9 Plus
Blast to na_te.dros performed on 2014-11-27 13:26:55 has no hits.

BS06526.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:44 Download gff for BS06526.complete
Subject Subject Range Query Range Percent Splice Strand
Nacalpha-RA 1..654 17..670 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:47 Download gff for BS06526.complete
Subject Subject Range Query Range Percent Splice Strand
Nacalpha-RA 48..709 17..679 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:42:59 Download gff for BS06526.complete
Subject Subject Range Query Range Percent Splice Strand
Nacalpha-RB 202..855 17..670 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:45 Download gff for BS06526.complete
Subject Subject Range Query Range Percent Splice Strand
Nacalpha-RA 48..709 17..679 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:35 Download gff for BS06526.complete
Subject Subject Range Query Range Percent Splice Strand
Nacalpha-RC 43..696 17..670 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:35 Download gff for BS06526.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12759862..12760515 17..670 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:42:59 Download gff for BS06526.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8647367..8648020 17..670 100   Minus

BS06526.pep Sequence

Translation from 16 to 669

> BS06526.pep
MPELTEIKSEAAPSTSAEAKPEDVRVEDDGSDSDSDGGMPGLEEAVAATT
QLGGGATGLPIDLVSKAKQSRGEKKARKIMLKLGLKQIQGVNRVTIRKSK
NILFVINNPDVYKNPHSDTYIVFGEAKIEDLSQQAQVAAAEKFKAPEAAG
AADSVGATTSVAPIAEEDEEDVDDTGVDEKDIELVITQANTTRAKAIKAL
KNNNNDIVNAIMELTML*

BS06526.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
Nacalpha-PD 217 CG8759-PD 1..217 1..217 1071 100 Plus
Nacalpha-PA 217 CG8759-PA 1..217 1..217 1071 100 Plus
Nacalpha-PC 217 CG8759-PC 1..217 1..217 1071 100 Plus
Nacalpha-PB 217 CG8759-PB 1..217 1..217 1071 100 Plus
CG4415-PB 347 CG4415-PB 145..346 26..216 350 45.1 Plus