Clone Sequence Records
BS06526.3prime Sequence
684 bp (683 high quality bases) assembled on 2005-12-03
> BS06526.3prime
ATGGTCTAGAAAGCTTCTAAAGCATAGTAAGCTCCATGATGGCGTTGACG
ATGTCATTGTTGTTGTTCTTCAGAGCCTTGATCGCCTTGGCCCTCGTCGT
GTTGGCCTGCGTGATGACCAGCTCGATATCCTTCTCATCCACGCCGGTGT
CATCGACATCCTCCTCGTCTTCCTCGGCAATGGGGGCCACCGATGTGGTG
GCGCCCACGCTGTCTGCAGCGCCAGCAGCCTCCGGGGCCTTGAACTTCTC
GGCGGCAGCCACCTGGGCCTGTTGCGACAGATCCTCGATCTTGGCCTCAC
CGAACACGATGTAGGTGTCGCTGTGGGGGTTCTTGTACACATCTGGGTTG
TTGATCACGAACAGGATGTTCTTCGACTTCCTGATCGTCACCCGGTTGAC
GCCCTGGATCTGCTTAAGTCCCAGCTTCAGCATGATCTTCCTGGCCTTTT
TCTCGCCGCGCGATTGCTTGGCCTTTGAGACGAGGTCGATGGGCAGACCG
GTGGCACCTCCACCCAGCTGTGTGGTGGCCGCTACAGCCTCCTCCAGACC
AGGCATGCCACCATCGGAGTCGCTATCACTGCCATCATCCTCAACGCGGA
CGTCCTCGGGTTTCGCCTCAGCGGAGGTGGAGGGCGCAGCCTCGCTCTTG
ATTTCGGTCAGTTCGGGCATGTCGACTGATAACT
BS06526.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8759-PB | 654 | Nacalpha-RB | 1..654 | 670..17 | 3270 | 100 | Minus |
CG8759-PC | 654 | Nacalpha-RC | 1..654 | 670..17 | 3270 | 100 | Minus |
CG8759-PA | 654 | Nacalpha-RA | 1..654 | 670..17 | 3270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:51:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nacalpha-RD | 832 | CG8759-RD | 10..664 | 670..16 | 3275 | 100 | Minus |
Nacalpha-RA | 895 | CG8759-RA | 73..727 | 670..16 | 3275 | 100 | Minus |
Nacalpha-RC | 865 | CG8759-RC | 43..697 | 670..16 | 3275 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:51:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12759861..12760515 | 16..670 | 3275 | 100 | Plus |
3R | 32079331 | 3R | 1516474..1516532 | 80..22 | 250 | 94.9 | Minus |
Blast to na_te.dros performed on 2015-01-31 16:51:38 has no hits.
BS06526.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:43:44 Download gff for
BS06526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8759-PA | 1..654 | 17..670 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:23:51 Download gff for
BS06526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8759-PA | 1..654 | 17..670 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:27:59 Download gff for
BS06526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nacalpha-RB | 202..863 | 8..670 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:45:24 Download gff for
BS06526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nacalpha-RC | 43..704 | 8..670 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:45:24 Download gff for
BS06526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12759854..12760524 | 8..678 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:27:59 Download gff for
BS06526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8647359..8648029 | 8..678 | 98 | | Plus |
BS06526.5prime Sequence
684 bp (683 high quality bases) assembled on 2005-12-03
> BS06526.5prime
GAAGTTATCAGTCGACATGCCCGAACTGACCGAAATCAAGAGCGAGGCTG
CGCCCTCCACCTCCGCTGAGGCGAAACCCGAGGACGTCCGCGTTGAGGAT
GATGGCAGTGATAGCGACTCCGATGGTGGCATGCCTGGTCTGGAGGAGGC
TGTAGCGGCCACCACACAGCTGGGTGGAGGTGCCACCGGTCTGCCCATCG
ACCTCGTCTCAAAGGCCAAGCAATCGCGCGGCGAGAAAAAGGCCAGGAAG
ATCATGCTGAAGCTGGGACTTAAGCAGATCCAGGGCGTCAACCGGGTGAC
GATCAGGAAGTCGAAGAACATCCTGTTCGTGATCAACAACCCAGATGTGT
ACAAGAACCCCCACAGCGACACCTACATCGTGTTCGGTGAGGCCAAGATC
GAGGATCTGTCGCAACAGGCCCAGGTGGCTGCCGCCGAGAAGTTCAAGGC
CCCGGAGGCTGCTGGCGCTGCAGACAGCGTGGGCGCCACCACATCGGTGG
CCCCCATTGCCGAGGAAGACGAGGAGGATGTCGATGACACCGGCGTGGAT
GAGAAGGATATCGAGCTGGTCATCACGCAGGCCAACACGACGAGGGCCAA
GGCGATCAAGGCTCTGAAGAACAACAACAATGACATCGTCAACGCCATCA
TGGAGCTTACTATGCTTTAGAAGCTTTCTAGACC
BS06526.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8759-PB | 654 | Nacalpha-RB | 1..654 | 17..670 | 3270 | 100 | Plus |
CG8759-PC | 654 | Nacalpha-RC | 1..654 | 17..670 | 3270 | 100 | Plus |
CG8759-PA | 654 | Nacalpha-RA | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:34:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nacalpha-RD | 832 | CG8759-RD | 10..664 | 17..671 | 3275 | 100 | Plus |
Nacalpha-RA | 895 | CG8759-RA | 73..727 | 17..671 | 3275 | 100 | Plus |
Nacalpha-RC | 865 | CG8759-RC | 43..697 | 17..671 | 3275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:34:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12759861..12760515 | 671..17 | 3275 | 100 | Minus |
3R | 32079331 | 3R | 1516474..1516532 | 607..665 | 250 | 94.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:34:16 has no hits.
BS06526.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:43:45 Download gff for
BS06526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8759-PA | 1..654 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:23:52 Download gff for
BS06526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8759-PA | 1..654 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:23:10 Download gff for
BS06526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nacalpha-RB | 202..863 | 17..679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:27:00 Download gff for
BS06526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nacalpha-RC | 43..704 | 17..679 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:27:00 Download gff for
BS06526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12759854..12760524 | 9..679 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:23:10 Download gff for
BS06526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8647359..8648029 | 9..679 | 98 | | Minus |
BS06526.complete Sequence
686 bp (686 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635532
> BS06526.complete
GAAGTTATCAGTCGACATGCCCGAACTGACCGAAATCAAGAGCGAGGCTG
CGCCCTCCACCTCCGCTGAGGCGAAACCCGAGGACGTCCGCGTTGAGGAT
GATGGCAGTGATAGCGACTCCGATGGTGGCATGCCTGGTCTGGAGGAGGC
TGTAGCGGCCACCACACAGCTGGGTGGAGGTGCCACCGGTCTGCCCATCG
ACCTCGTCTCAAAGGCCAAGCAATCGCGCGGCGAGAAAAAGGCCAGGAAG
ATCATGCTGAAGCTGGGACTTAAGCAGATCCAGGGCGTCAACCGGGTGAC
GATCAGGAAGTCGAAGAACATCCTGTTCGTGATCAACAACCCAGATGTGT
ACAAGAACCCCCACAGCGACACCTACATCGTGTTCGGTGAGGCCAAGATC
GAGGATCTGTCGCAACAGGCCCAGGTGGCTGCCGCCGAGAAGTTCAAGGC
CCCGGAGGCTGCTGGCGCTGCAGACAGCGTGGGCGCCACCACATCGGTGG
CCCCCATTGCCGAGGAAGACGAGGAGGATGTCGATGACACCGGCGTGGAT
GAGAAGGATATCGAGCTGGTCATCACGCAGGCCAACACGACGAGGGCCAA
GGCGATCAAGGCTCTGAAGAACAACAACAATGACATCGTCAACGCCATCA
TGGAGCTTACTATGCTTTAGAAGCTTTCTAGACCAT
BS06526.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:26:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nacalpha-RD | 654 | CG8759-PD | 1..654 | 17..670 | 3270 | 100 | Plus |
Nacalpha-RA | 654 | CG8759-PA | 1..654 | 17..670 | 3270 | 100 | Plus |
Nacalpha-RC | 654 | CG8759-PC | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:26:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nacalpha-RD | 832 | CG8759-RD | 10..664 | 17..671 | 3275 | 100 | Plus |
Nacalpha-RA | 895 | CG8759-RA | 73..727 | 17..671 | 3275 | 100 | Plus |
Nacalpha-RC | 865 | CG8759-RC | 43..697 | 17..671 | 3275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:26:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12759861..12760515 | 671..17 | 3275 | 100 | Minus |
3R | 32079331 | 3R | 1516474..1516532 | 607..665 | 250 | 94.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:26:55 has no hits.
BS06526.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:44 Download gff for
BS06526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nacalpha-RA | 1..654 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:47 Download gff for
BS06526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nacalpha-RA | 48..709 | 17..679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:42:59 Download gff for
BS06526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nacalpha-RB | 202..855 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:45 Download gff for
BS06526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nacalpha-RA | 48..709 | 17..679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:35 Download gff for
BS06526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nacalpha-RC | 43..696 | 17..670 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:35 Download gff for
BS06526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12759862..12760515 | 17..670 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:42:59 Download gff for
BS06526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8647367..8648020 | 17..670 | 100 | | Minus |
BS06526.pep Sequence
Translation from 16 to 669
> BS06526.pep
MPELTEIKSEAAPSTSAEAKPEDVRVEDDGSDSDSDGGMPGLEEAVAATT
QLGGGATGLPIDLVSKAKQSRGEKKARKIMLKLGLKQIQGVNRVTIRKSK
NILFVINNPDVYKNPHSDTYIVFGEAKIEDLSQQAQVAAAEKFKAPEAAG
AADSVGATTSVAPIAEEDEEDVDDTGVDEKDIELVITQANTTRAKAIKAL
KNNNNDIVNAIMELTML*
BS06526.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nacalpha-PD | 217 | CG8759-PD | 1..217 | 1..217 | 1071 | 100 | Plus |
Nacalpha-PA | 217 | CG8759-PA | 1..217 | 1..217 | 1071 | 100 | Plus |
Nacalpha-PC | 217 | CG8759-PC | 1..217 | 1..217 | 1071 | 100 | Plus |
Nacalpha-PB | 217 | CG8759-PB | 1..217 | 1..217 | 1071 | 100 | Plus |
CG4415-PB | 347 | CG4415-PB | 145..346 | 26..216 | 350 | 45.1 | Plus |