Clone Sequence Records
BS06530.3prime Sequence
911 bp (755 high quality bases) assembled on 2005-12-03
> BS06530.3prime
ATGGTCTAGAAAGCTTTCAGGAGCGTACAATCAGTGAGTTGGAGTTCTGT
CGGATGAAGTCCATGTAGTTGCGTATGGCCAGAAAGCTGGACATGATGCG
GTTGTTCTCCCAGCGCCAGTCGATCATGATGCCCACCAGGTAGTAGTTCT
GAGTGACGTGCCCCTTCTTCTGCAACCCCACTAGAGGTGCGCCCAAGTAA
TAAGCTACCGGTTGCTTGTGGTAGCCACAAACCGTGTTGCTGCTGGTCAC
CAGCGTCTTGACCTTCGATTGACAGAAGCCGCGACTCAGCGTGTTTACCC
AGGTCTTTAGTCTGAAGTCCTCAAAGACGCGAAGACCAGCTACTACAAAC
GTCTGAGCAACCAGGGTCTCGTTGAGCAGGCTTGGAGGTGGCATGCAAAT
TGGCATTACATTTGGGTAGATCTTTGCGTCTCGCTGAAGAGTCAGCACCG
CCAGGGAGTTCTTTAAGGTTCGCGAGTCGTAGTCCGGATGGATGGCTATC
TCGGCCAGCTTGATTTCCTGCGACGGACGCACGCAATAGCCATCCGTTTC
GCAGACTCGCACTCCGACCGGAGCACTCTTGTTGTGGACACCCAGGTGGA
CGGAGAAGGCCTCCGCTACTCCGTTGTACTGGACAAAACAGTGGGCGGGC
GCCAAGACAGTGCGCTTCGATACCAGCACGCCCAGACATCCATTGTCCCG
AATCTTGCCCTCAAACCCCTTGCCATACACTATCCGGGCCACCCACTGGT
GCTCCGTGGGAATGGCGAAGGTGCTTTGCATATTGAGCATCTGATCTTCG
TCGAATGCACCGCACTGGTCATCATTCACTTTCGCCGACCGAACTTCCGG
GCCAAAAGACCGACGAGCAATAATAAAACTGCGATTCTACCCAGCATGTC
GACTGATAACT
BS06530.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31199-PA | 882 | CG31199-RA | 42..882 | 857..17 | 4205 | 100 | Minus |
CG31199-PA | 882 | CG31199-RA | 1..44 | 897..854 | 195 | 97.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:32:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31199-RA | 1013 | CG31199-RA | 105..987 | 897..16 | 4375 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:32:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20742826..20743528 | 16..718 | 3515 | 100 | Plus |
3R | 32079331 | 3R | 20743584..20743765 | 717..897 | 845 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:32:20 has no hits.
BS06530.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:43:54 Download gff for
BS06530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31199-PA | 1..882 | 17..897 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:24:01 Download gff for
BS06530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31199-PA | 1..882 | 17..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:44:30 Download gff for
BS06530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31199-RA | 100..990 | 12..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:52:39 Download gff for
BS06530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31199-RA | 100..990 | 12..906 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:52:39 Download gff for
BS06530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20742823..20743527 | 12..717 | 99 | <- | Plus |
3R | 20743585..20743770 | 718..906 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:44:30 Download gff for
BS06530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16568545..16569249 | 12..717 | 99 | <- | Plus |
arm_3R | 16569307..16569492 | 718..906 | 96 | | Plus |
BS06530.5prime Sequence
912 bp (747 high quality bases) assembled on 2005-12-03
> BS06530.5prime
GAAGTTATCAGTCGACATGCTTGGTAGAATCGCAGTTTTATTATTGCTCG
TCGGTCTTTTTGGCCCGGAAGTTCGGTCGGCGAAAGTGAATGATGACCAG
TGCGGTGCATTCGACGAAGATCAGATGCTCAATATGCAAAGCACCTTCGC
CATTCCCACGGAGCACCAGTGGGTGGCCCGGATAGTGTATGGCAAGGGGT
TTGAGGGCAAGATTCGGGACAATGGATGTCTGGGCGTGCTGGTATCGAAG
CGCACTGTCTTGGCGCCCGCCCACTGTTTTGTCCAGTACAACGGAGTAGC
GGAGGCCTTCTCCGTCCACCTGGGTGTCCACAACAAGAGTGCTCCGGTCG
GAGTGCGAGTCTGCGAAACGGATGGCTATTGCGTGCGTCCGTCGCAGGAA
ATCAAGCTGGCCGAGATAGCCATCCATCCGGACTACGACTCGCGAACCTT
AAAGAACTCCCTGGCGGTGCTGACTCTTCAGCGAGACGCAAAGATCTACC
CAAATGTAATGCCAATTTGCATGCCACCTCCAAGCCTGCTCAACGAGACC
CTGGTTGCTCAGACGTTTGTAGTAGCTGGTCTTCGCGTCTTTGAGGACTT
CAGACTAAAGACCTGGGTAAACACGCTGAGTCGCGGCTTCTGTCAATCGA
AGGTCAAGACGCTGGTGACCAGCAGCAACACGGTTTGTGGCTACCACAAG
CAACCGGTAGCTTATTACTTGGGCGCACCTCTAGTGGGGTTGCAGAAGAA
GGGGCACGTCACTCAGAACTACTACCTGGTGGGCATCATGATCGACTGGC
GCTGGGAGAACAACCGCATCATGTCCAGCTTTCTGGCCATACGCAACTAC
ATGGACTTCATCCGACAGAACTCCAACTCACTGATTGTACGCTCCTGAAA
GCTTTCTAGACC
BS06530.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31199-PA | 882 | CG31199-RA | 1..882 | 17..898 | 4410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:40:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31199-RA | 1013 | CG31199-RA | 105..987 | 17..899 | 4415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:40:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20742826..20743528 | 899..197 | 3515 | 100 | Minus |
3R | 32079331 | 3R | 20743584..20743765 | 198..17 | 910 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:40:56 has no hits.
BS06530.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:43:56 Download gff for
BS06530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31199-PA | 1..882 | 17..898 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:24:02 Download gff for
BS06530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31199-PA | 1..882 | 17..898 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:32:15 Download gff for
BS06530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31199-RA | 100..990 | 8..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:29:09 Download gff for
BS06530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31199-RA | 100..990 | 8..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:29:09 Download gff for
BS06530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20742823..20743527 | 198..903 | 99 | <- | Minus |
3R | 20743585..20743770 | 8..197 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:32:15 Download gff for
BS06530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16568545..16569249 | 198..903 | 99 | <- | Minus |
arm_3R | 16569307..16569492 | 8..197 | 97 | | Minus |
BS06530.complete Sequence
914 bp (914 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635533
> BS06530.complete
GAAGTTATCAGTCGACATGCTTGGTAGAATCGCAGTTTTATTATTGCTCG
TCGGTCTTTTTGGCCCGGAAGTTCGGTCGGCGAAAGTGAATGATGACCAG
TGCGGTGCATTCGACGAAGATCAGATGCTCAATATGCAAAGCACCTTCGC
CATTCCCACGGAGCACCAGTGGGTGGCCCGGATAGTGTATGGCAAGGGGT
TTGAGGGCAAGATTCGGGACAATGGATGTCTGGGCGTGCTGGTATCGAAG
CGCACTGTCTTGGCGCCCGCCCACTGTTTTGTCCAGTACAACGGAGTAGC
GGAGGCCTTCTCCGTCCACCTGGGTGTCCACAACAAGAGTGCTCCGGTCG
GAGTGCGAGTCTGCGAAACGGATGGCTATTGCGTGCGTCCGTCGCAGGAA
ATCAAGCTGGCCGAGATAGCCATCCATCCGGACTACGACTCGCGAACCTT
AAAGAACTCCCTGGCGGTGCTGACTCTTCAGCGAGACGCAAAGATCTACC
CAAATGTAATGCCAATTTGCATGCCACCTCCAAGCCTGCTCAACGAGACC
CTGGTTGCTCAGACGTTTGTAGTAGCTGGTCTTCGCGTCTTTGAGGACTT
CAGACTAAAGACCTGGGTAAACACGCTGAGTCGCGGCTTCTGTCAATCGA
AGGTCAAGACGCTGGTGACCAGCAGCAACACGGTTTGTGGCTACCACAAG
CAACCGGTAGCTTATTACTTGGGCGCACCTCTAGTGGGGTTGCAGAAGAA
GGGGCACGTCACTCAGAACTACTACCTGGTGGGCATCATGATCGACTGGC
GCTGGGAGAACAACCGCATCATGTCCAGCTTTCTGGCCATACGCAACTAC
ATGGACTTCATCCGACAGAACTCCAACTCACTGATTGTACGCTCCTGAAA
GCTTTCTAGACCAT
BS06530.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:25:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31199-RA | 882 | CG31199-PA | 1..882 | 17..898 | 4410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:25:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31199-RA | 1013 | CG31199-RA | 105..987 | 17..899 | 4415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:25:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20742826..20743528 | 899..197 | 3515 | 100 | Minus |
3R | 32079331 | 3R | 20743584..20743765 | 198..17 | 910 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:25:27 has no hits.
BS06530.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:29 Download gff for
BS06530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31199-RA | 1..882 | 17..898 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:47 Download gff for
BS06530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31199-RA | 100..990 | 8..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:08:40 Download gff for
BS06530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31199-RA | 105..985 | 17..897 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:30 Download gff for
BS06530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31199-RA | 100..990 | 8..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:21:28 Download gff for
BS06530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31199-RA | 105..985 | 17..897 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:21:28 Download gff for
BS06530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20742828..20743527 | 198..897 | 100 | <- | Minus |
3R | 20743585..20743765 | 17..197 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:08:40 Download gff for
BS06530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16568550..16569249 | 198..897 | 100 | <- | Minus |
arm_3R | 16569307..16569487 | 17..197 | 100 | | Minus |
BS06530.pep Sequence
Translation from 16 to 897
> BS06530.pep
MLGRIAVLLLLVGLFGPEVRSAKVNDDQCGAFDEDQMLNMQSTFAIPTEH
QWVARIVYGKGFEGKIRDNGCLGVLVSKRTVLAPAHCFVQYNGVAEAFSV
HLGVHNKSAPVGVRVCETDGYCVRPSQEIKLAEIAIHPDYDSRTLKNSLA
VLTLQRDAKIYPNVMPICMPPPSLLNETLVAQTFVVAGLRVFEDFRLKTW
VNTLSRGFCQSKVKTLVTSSNTVCGYHKQPVAYYLGAPLVGLQKKGHVTQ
NYYLVGIMIDWRWENNRIMSSFLAIRNYMDFIRQNSNSLIVRS*
BS06530.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31199-PA | 293 | CG31199-PA | 1..293 | 1..293 | 1537 | 100 | Plus |
CG31200-PA | 284 | CG31200-PA | 25..256 | 28..259 | 223 | 28.7 | Plus |
CG31205-PC | 274 | CG31205-PC | 5..273 | 4..289 | 215 | 27 | Plus |
CG31205-PB | 274 | CG31205-PB | 5..273 | 4..289 | 215 | 27 | Plus |
CG11313-PD | 370 | CG11313-PD | 125..299 | 48..217 | 178 | 28.3 | Plus |