Clone BS06530 Report

Search the DGRC for BS06530

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:65
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptCG31199-RA
Protein status:BS06530.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06530.3prime Sequence

911 bp (755 high quality bases) assembled on 2005-12-03

> BS06530.3prime
ATGGTCTAGAAAGCTTTCAGGAGCGTACAATCAGTGAGTTGGAGTTCTGT
CGGATGAAGTCCATGTAGTTGCGTATGGCCAGAAAGCTGGACATGATGCG
GTTGTTCTCCCAGCGCCAGTCGATCATGATGCCCACCAGGTAGTAGTTCT
GAGTGACGTGCCCCTTCTTCTGCAACCCCACTAGAGGTGCGCCCAAGTAA
TAAGCTACCGGTTGCTTGTGGTAGCCACAAACCGTGTTGCTGCTGGTCAC
CAGCGTCTTGACCTTCGATTGACAGAAGCCGCGACTCAGCGTGTTTACCC
AGGTCTTTAGTCTGAAGTCCTCAAAGACGCGAAGACCAGCTACTACAAAC
GTCTGAGCAACCAGGGTCTCGTTGAGCAGGCTTGGAGGTGGCATGCAAAT
TGGCATTACATTTGGGTAGATCTTTGCGTCTCGCTGAAGAGTCAGCACCG
CCAGGGAGTTCTTTAAGGTTCGCGAGTCGTAGTCCGGATGGATGGCTATC
TCGGCCAGCTTGATTTCCTGCGACGGACGCACGCAATAGCCATCCGTTTC
GCAGACTCGCACTCCGACCGGAGCACTCTTGTTGTGGACACCCAGGTGGA
CGGAGAAGGCCTCCGCTACTCCGTTGTACTGGACAAAACAGTGGGCGGGC
GCCAAGACAGTGCGCTTCGATACCAGCACGCCCAGACATCCATTGTCCCG
AATCTTGCCCTCAAACCCCTTGCCATACACTATCCGGGCCACCCACTGGT
GCTCCGTGGGAATGGCGAAGGTGCTTTGCATATTGAGCATCTGATCTTCG
TCGAATGCACCGCACTGGTCATCATTCACTTTCGCCGACCGAACTTCCGG
GCCAAAAGACCGACGAGCAATAATAAAACTGCGATTCTACCCAGCATGTC
GACTGATAACT

BS06530.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG31199-PA 882 CG31199-RA 42..882 857..17 4205 100 Minus
CG31199-PA 882 CG31199-RA 1..44 897..854 195 97.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG31199-RA 1013 CG31199-RA 105..987 897..16 4375 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20742826..20743528 16..718 3515 100 Plus
3R 32079331 3R 20743584..20743765 717..897 845 98.9 Plus
Blast to na_te.dros performed on 2015-02-06 12:32:20 has no hits.

BS06530.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:43:54 Download gff for BS06530.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31199-PA 1..882 17..897 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:24:01 Download gff for BS06530.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31199-PA 1..882 17..897 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:44:30 Download gff for BS06530.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31199-RA 100..990 12..906 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:52:39 Download gff for BS06530.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31199-RA 100..990 12..906 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:52:39 Download gff for BS06530.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20742823..20743527 12..717 99 <- Plus
3R 20743585..20743770 718..906 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:44:30 Download gff for BS06530.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16568545..16569249 12..717 99 <- Plus
arm_3R 16569307..16569492 718..906 96   Plus

BS06530.5prime Sequence

912 bp (747 high quality bases) assembled on 2005-12-03

> BS06530.5prime
GAAGTTATCAGTCGACATGCTTGGTAGAATCGCAGTTTTATTATTGCTCG
TCGGTCTTTTTGGCCCGGAAGTTCGGTCGGCGAAAGTGAATGATGACCAG
TGCGGTGCATTCGACGAAGATCAGATGCTCAATATGCAAAGCACCTTCGC
CATTCCCACGGAGCACCAGTGGGTGGCCCGGATAGTGTATGGCAAGGGGT
TTGAGGGCAAGATTCGGGACAATGGATGTCTGGGCGTGCTGGTATCGAAG
CGCACTGTCTTGGCGCCCGCCCACTGTTTTGTCCAGTACAACGGAGTAGC
GGAGGCCTTCTCCGTCCACCTGGGTGTCCACAACAAGAGTGCTCCGGTCG
GAGTGCGAGTCTGCGAAACGGATGGCTATTGCGTGCGTCCGTCGCAGGAA
ATCAAGCTGGCCGAGATAGCCATCCATCCGGACTACGACTCGCGAACCTT
AAAGAACTCCCTGGCGGTGCTGACTCTTCAGCGAGACGCAAAGATCTACC
CAAATGTAATGCCAATTTGCATGCCACCTCCAAGCCTGCTCAACGAGACC
CTGGTTGCTCAGACGTTTGTAGTAGCTGGTCTTCGCGTCTTTGAGGACTT
CAGACTAAAGACCTGGGTAAACACGCTGAGTCGCGGCTTCTGTCAATCGA
AGGTCAAGACGCTGGTGACCAGCAGCAACACGGTTTGTGGCTACCACAAG
CAACCGGTAGCTTATTACTTGGGCGCACCTCTAGTGGGGTTGCAGAAGAA
GGGGCACGTCACTCAGAACTACTACCTGGTGGGCATCATGATCGACTGGC
GCTGGGAGAACAACCGCATCATGTCCAGCTTTCTGGCCATACGCAACTAC
ATGGACTTCATCCGACAGAACTCCAACTCACTGATTGTACGCTCCTGAAA
GCTTTCTAGACC

BS06530.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG31199-PA 882 CG31199-RA 1..882 17..898 4410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG31199-RA 1013 CG31199-RA 105..987 17..899 4415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:40:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20742826..20743528 899..197 3515 100 Minus
3R 32079331 3R 20743584..20743765 198..17 910 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:40:56 has no hits.

BS06530.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:43:56 Download gff for BS06530.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31199-PA 1..882 17..898 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:24:02 Download gff for BS06530.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31199-PA 1..882 17..898 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:32:15 Download gff for BS06530.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31199-RA 100..990 8..903 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:29:09 Download gff for BS06530.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31199-RA 100..990 8..903 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:29:09 Download gff for BS06530.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20742823..20743527 198..903 99 <- Minus
3R 20743585..20743770 8..197 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:32:15 Download gff for BS06530.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16568545..16569249 198..903 99 <- Minus
arm_3R 16569307..16569492 8..197 97   Minus

BS06530.complete Sequence

914 bp (914 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635533

> BS06530.complete
GAAGTTATCAGTCGACATGCTTGGTAGAATCGCAGTTTTATTATTGCTCG
TCGGTCTTTTTGGCCCGGAAGTTCGGTCGGCGAAAGTGAATGATGACCAG
TGCGGTGCATTCGACGAAGATCAGATGCTCAATATGCAAAGCACCTTCGC
CATTCCCACGGAGCACCAGTGGGTGGCCCGGATAGTGTATGGCAAGGGGT
TTGAGGGCAAGATTCGGGACAATGGATGTCTGGGCGTGCTGGTATCGAAG
CGCACTGTCTTGGCGCCCGCCCACTGTTTTGTCCAGTACAACGGAGTAGC
GGAGGCCTTCTCCGTCCACCTGGGTGTCCACAACAAGAGTGCTCCGGTCG
GAGTGCGAGTCTGCGAAACGGATGGCTATTGCGTGCGTCCGTCGCAGGAA
ATCAAGCTGGCCGAGATAGCCATCCATCCGGACTACGACTCGCGAACCTT
AAAGAACTCCCTGGCGGTGCTGACTCTTCAGCGAGACGCAAAGATCTACC
CAAATGTAATGCCAATTTGCATGCCACCTCCAAGCCTGCTCAACGAGACC
CTGGTTGCTCAGACGTTTGTAGTAGCTGGTCTTCGCGTCTTTGAGGACTT
CAGACTAAAGACCTGGGTAAACACGCTGAGTCGCGGCTTCTGTCAATCGA
AGGTCAAGACGCTGGTGACCAGCAGCAACACGGTTTGTGGCTACCACAAG
CAACCGGTAGCTTATTACTTGGGCGCACCTCTAGTGGGGTTGCAGAAGAA
GGGGCACGTCACTCAGAACTACTACCTGGTGGGCATCATGATCGACTGGC
GCTGGGAGAACAACCGCATCATGTCCAGCTTTCTGGCCATACGCAACTAC
ATGGACTTCATCCGACAGAACTCCAACTCACTGATTGTACGCTCCTGAAA
GCTTTCTAGACCAT

BS06530.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG31199-RA 882 CG31199-PA 1..882 17..898 4410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:25:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG31199-RA 1013 CG31199-RA 105..987 17..899 4415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20742826..20743528 899..197 3515 100 Minus
3R 32079331 3R 20743584..20743765 198..17 910 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:25:27 has no hits.

BS06530.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:29 Download gff for BS06530.complete
Subject Subject Range Query Range Percent Splice Strand
CG31199-RA 1..882 17..898 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:47 Download gff for BS06530.complete
Subject Subject Range Query Range Percent Splice Strand
CG31199-RA 100..990 8..903 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:08:40 Download gff for BS06530.complete
Subject Subject Range Query Range Percent Splice Strand
CG31199-RA 105..985 17..897 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:30 Download gff for BS06530.complete
Subject Subject Range Query Range Percent Splice Strand
CG31199-RA 100..990 8..903 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:21:28 Download gff for BS06530.complete
Subject Subject Range Query Range Percent Splice Strand
CG31199-RA 105..985 17..897 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:21:28 Download gff for BS06530.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20742828..20743527 198..897 100 <- Minus
3R 20743585..20743765 17..197 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:08:40 Download gff for BS06530.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16568550..16569249 198..897 100 <- Minus
arm_3R 16569307..16569487 17..197 100   Minus

BS06530.pep Sequence

Translation from 16 to 897

> BS06530.pep
MLGRIAVLLLLVGLFGPEVRSAKVNDDQCGAFDEDQMLNMQSTFAIPTEH
QWVARIVYGKGFEGKIRDNGCLGVLVSKRTVLAPAHCFVQYNGVAEAFSV
HLGVHNKSAPVGVRVCETDGYCVRPSQEIKLAEIAIHPDYDSRTLKNSLA
VLTLQRDAKIYPNVMPICMPPPSLLNETLVAQTFVVAGLRVFEDFRLKTW
VNTLSRGFCQSKVKTLVTSSNTVCGYHKQPVAYYLGAPLVGLQKKGHVTQ
NYYLVGIMIDWRWENNRIMSSFLAIRNYMDFIRQNSNSLIVRS*

BS06530.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG31199-PA 293 CG31199-PA 1..293 1..293 1537 100 Plus
CG31200-PA 284 CG31200-PA 25..256 28..259 223 28.7 Plus
CG31205-PC 274 CG31205-PC 5..273 4..289 215 27 Plus
CG31205-PB 274 CG31205-PB 5..273 4..289 215 27 Plus
CG11313-PD 370 CG11313-PD 125..299 48..217 178 28.3 Plus