Clone BS06537 Report

Search the DGRC for BS06537

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:65
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptCG1885-RA
Protein status:BS06537.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06537.3prime Sequence

864 bp (728 high quality bases) assembled on 2005-12-03

> BS06537.3prime
ATGGTCTAGAAAGCTTTTAATTGTTATTCTCGATGGCGGCCATCCGTTCG
CGCTCCTTGAGCAACCGCTCCCGACTGTCCTGCGGATTGAGCAGCACCTT
GACCAGATGCTCCACCGTCGGCCGCTCGGCGGTGCAGTAAACCTTTTGGC
CCAGCGATTCGAGGGCACGCCTAGTGCTCGGCCCGATGGCCACCAGCTTC
CATTTGTCCATCGATAGCTGACGGCTGGTGAAGTACTGCTGTGCACAATT
GACGCCCGATGGCGAGAAGAAGGCAAGAAATTCAATCGACTCGCCATAAA
TCTCCAATGCCCTCTCCACATTGGCGCCCAATTCGGGATGACAGCGCGTC
TCGTACACTTCGCACGCATCCACGGAGAAGCCATTCTCGGCCAGCTTGGA
TAGCAGCGTATCGGTGGCCAGATTACCGCATGGCAATAGTAGCGGCAATG
CACGCGATCCATCGAACGTATCCACTATATAGTCGCCCAATGCCCGGGCA
TTGCCCGTCTGTTTGCCGTGGGTGAATAGCTGGTCCAAGGTGCTTAGCGC
CAGATTGTGGGTCACCTCGCCGACGGCATAGTTATGCAACATCTTCCAAC
CGCCGGGTAGCTCGCCGAGATTGAGGGATTCAGCCACGGCCTCCACGCAG
CGCGGCGATGTGAATATGATGCCGGCATATTTATCCGGATTCTGAAGCTT
GGCGCGCAGCTCATCGAGATTCTTGAAGCCGAAACTCAGCGTGGGCACAA
AGACGGGATTGAAATCGTGCTTCTCCAGCGTTTCTGCGTACACATCGCTG
CTTTCCGATTCCGATTTGAATATGATCACAGTTCGCTGGCGACTCGTCAT
GTCGACTGATAACT

BS06537.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG1885-PA 834 CG1885-RA 1..834 850..17 4170 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:56:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG1885-RB 1711 CG1885-RB 205..1038 850..17 4170 100 Minus
CG1885-RA 1229 CG1885-RA 205..1038 850..17 4170 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:56:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8899227..8900060 17..850 4170 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:56:15 has no hits.

BS06537.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:44:12 Download gff for BS06537.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1885-PA 1..834 17..850 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:24:20 Download gff for BS06537.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1885-PA 1..834 17..850 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:49:10 Download gff for BS06537.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1885-RA 198..1042 12..858 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:31:52 Download gff for BS06537.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1885-RA 198..1042 12..858 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:31:52 Download gff for BS06537.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8899223..8900067 12..858 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:49:10 Download gff for BS06537.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8793256..8794100 12..858 99   Plus

BS06537.5prime Sequence

775 bp (774 high quality bases) assembled on 2005-12-03

> BS06537.5prime
GAAGTTATCAGTCGACATGACGAGTCGCCAGCGAACTGTGATCATATTCA
AATCGGAATCGGAAAGCAGCGATGTGTACGCAGAAACGCTGGAGAAGCAC
GATTTCAATCCCGTCTTTGTGCCCACGCTGAGTTTCGGCTTCAAGAATCT
CGATGAGCTGCGCGCCAAGCTTCAGAATCCGGATAAATATGCCGGCATCA
TATTCACATCGCCGCGCTGCGTGGAGGCCGTGGCTGAATCCCTCAATCTC
GGCGAGCTACCCGGCGGTTGGAAGATGTTGCATAACTATGCCGTCGGCGA
GGTGACCCACAATCTGGCGCTAAGCACCTTGGACCAGCTATTCACCCACG
GCAAACAGACGGGCAATGCCCGGGCATTGGGCGACTATATAGTGGATACG
TTCGATGGATCGCGTGCATTGCCGCTACTATTGCCATGCGGTAATCTGGC
CACCGATACGCTGCTATCCAAGCTGGCCGAGAATGGCTTCTCCGTGGATG
CGTGCGAAGTGTACGAGACGCGCTGTCATCCCGAATTGGGCGCCAATGTG
GAGAGGGCATTGGAGATTTATGGCGAGTCGATTGAATTTCTTGCCTTCTT
CTCGCCATCGGGCGTCAATTGTGCACAGCAGTACTTCACCAGCCGTCAGC
TATCGATGGACAAATGGAAGCTGGTGGCCATCGGGCCGAGCACTAGGCGT
GCCCTCGAATCGCTGGGCCAAAAGGTTTACTGCACCGCCGAGCGGCCGAC
GGTGGAGCATCTGGTCAAGGTGCTG

BS06537.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG1885-PA 834 CG1885-RA 1..759 17..775 3795 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:56:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG1885-RB 1711 CG1885-RB 205..963 17..775 3795 100 Plus
CG1885-RA 1229 CG1885-RA 205..963 17..775 3795 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:56:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8899302..8900060 775..17 3795 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:56:13 has no hits.

BS06537.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:44:13 Download gff for BS06537.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1885-PA 1..759 17..775 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:24:21 Download gff for BS06537.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1885-PA 1..759 17..775 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:17:01 Download gff for BS06537.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1885-RA 198..963 9..775 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:52:46 Download gff for BS06537.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1885-RA 198..963 9..775 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:52:46 Download gff for BS06537.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8899302..8900067 9..775 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:17:01 Download gff for BS06537.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8793335..8794100 9..775 99   Minus

BS06537.complete Sequence

866 bp (866 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635534

> BS06537.complete
GAAGTTATCAGTCGACATGACGAGTCGCCAGCGAACTGTGATCATATTCA
AATCGGAATCGGAAAGCAGCGATGTGTACGCAGAAACGCTGGAGAAGCAC
GATTTCAATCCCGTCTTTGTGCCCACGCTGAGTTTCGGCTTCAAGAATCT
CGATGAGCTGCGCGCCAAGCTTCAGAATCCGGATAAATATGCCGGCATCA
TATTCACATCGCCGCGCTGCGTGGAGGCCGTGGCTGAATCCCTCAATCTC
GGCGAGCTACCCGGCGGTTGGAAGATGTTGCATAACTATGCCGTCGGCGA
GGTGACCCACAATCTGGCGCTAAGCACCTTGGACCAGCTATTCACCCACG
GCAAACAGACGGGCAATGCCCGGGCATTGGGCGACTATATAGTGGATACG
TTCGATGGATCGCGTGCATTGCCGCTACTATTGCCATGCGGTAATCTGGC
CACCGATACGCTGCTATCCAAGCTGGCCGAGAATGGCTTCTCCGTGGATG
CGTGCGAAGTGTACGAGACGCGCTGTCATCCCGAATTGGGCGCCAATGTG
GAGAGGGCATTGGAGATTTATGGCGAGTCGATTGAATTTCTTGCCTTCTT
CTCGCCATCGGGCGTCAATTGTGCACAGCAGTACTTCACCAGCCGTCAGC
TATCGATGGACAAATGGAAGCTGGTGGCCATCGGGCCGAGCACTAGGCGT
GCCCTCGAATCGCTGGGCCAAAAGGTTTACTGCACCGCCGAGCGGCCGAC
GGTGGAGCATCTGGTCAAGGTGCTGCTCAATCCGCAGGACAGTCGGGAGC
GGTTGCTCAAGGAGCGCGAACGGATGGCCGCCATCGAGAATAACAATTAA
AAGCTTTCTAGACCAT

BS06537.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:04:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG1885-RB 834 CG1885-PB 1..834 17..850 4170 100 Plus
CG1885-RA 834 CG1885-PA 1..834 17..850 4170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:04:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG1885-RB 1711 CG1885-RB 205..1038 17..850 4170 100 Plus
CG1885-RA 1229 CG1885-RA 205..1038 17..850 4170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:03:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8899227..8900060 850..17 4170 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:04:00 has no hits.

BS06537.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:31 Download gff for BS06537.complete
Subject Subject Range Query Range Percent Splice Strand
CG1885-RA 1..834 17..850 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:57:12 Download gff for BS06537.complete
Subject Subject Range Query Range Percent Splice Strand
CG1885-RA 112..956 9..855 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:36 Download gff for BS06537.complete
Subject Subject Range Query Range Percent Splice Strand
CG1885-RA 205..1036 17..848 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:31 Download gff for BS06537.complete
Subject Subject Range Query Range Percent Splice Strand
CG1885-RA 112..956 9..855 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:04 Download gff for BS06537.complete
Subject Subject Range Query Range Percent Splice Strand
CG1885-RA 205..1036 17..848 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:12:04 Download gff for BS06537.complete
Subject Subject Range Query Range Percent Splice Strand
X 8899229..8900060 17..848 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:36 Download gff for BS06537.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8793262..8794093 17..848 100   Minus

BS06537.pep Sequence

Translation from 16 to 849

> BS06537.pep
MTSRQRTVIIFKSESESSDVYAETLEKHDFNPVFVPTLSFGFKNLDELRA
KLQNPDKYAGIIFTSPRCVEAVAESLNLGELPGGWKMLHNYAVGEVTHNL
ALSTLDQLFTHGKQTGNARALGDYIVDTFDGSRALPLLLPCGNLATDTLL
SKLAENGFSVDACEVYETRCHPELGANVERALEIYGESIEFLAFFSPSGV
NCAQQYFTSRQLSMDKWKLVAIGPSTRRALESLGQKVYCTAERPTVEHLV
KVLLNPQDSRERLLKERERMAAIENNN*

BS06537.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG1885-PB 277 CG1885-PB 1..277 1..277 1433 100 Plus
CG1885-PA 277 CG1885-PA 1..277 1..277 1433 100 Plus
CG9589-PA 253 CG9589-PA 1..251 1..253 513 41.9 Plus