Clone Sequence Records
BS06537.3prime Sequence
864 bp (728 high quality bases) assembled on 2005-12-03
> BS06537.3prime
ATGGTCTAGAAAGCTTTTAATTGTTATTCTCGATGGCGGCCATCCGTTCG
CGCTCCTTGAGCAACCGCTCCCGACTGTCCTGCGGATTGAGCAGCACCTT
GACCAGATGCTCCACCGTCGGCCGCTCGGCGGTGCAGTAAACCTTTTGGC
CCAGCGATTCGAGGGCACGCCTAGTGCTCGGCCCGATGGCCACCAGCTTC
CATTTGTCCATCGATAGCTGACGGCTGGTGAAGTACTGCTGTGCACAATT
GACGCCCGATGGCGAGAAGAAGGCAAGAAATTCAATCGACTCGCCATAAA
TCTCCAATGCCCTCTCCACATTGGCGCCCAATTCGGGATGACAGCGCGTC
TCGTACACTTCGCACGCATCCACGGAGAAGCCATTCTCGGCCAGCTTGGA
TAGCAGCGTATCGGTGGCCAGATTACCGCATGGCAATAGTAGCGGCAATG
CACGCGATCCATCGAACGTATCCACTATATAGTCGCCCAATGCCCGGGCA
TTGCCCGTCTGTTTGCCGTGGGTGAATAGCTGGTCCAAGGTGCTTAGCGC
CAGATTGTGGGTCACCTCGCCGACGGCATAGTTATGCAACATCTTCCAAC
CGCCGGGTAGCTCGCCGAGATTGAGGGATTCAGCCACGGCCTCCACGCAG
CGCGGCGATGTGAATATGATGCCGGCATATTTATCCGGATTCTGAAGCTT
GGCGCGCAGCTCATCGAGATTCTTGAAGCCGAAACTCAGCGTGGGCACAA
AGACGGGATTGAAATCGTGCTTCTCCAGCGTTTCTGCGTACACATCGCTG
CTTTCCGATTCCGATTTGAATATGATCACAGTTCGCTGGCGACTCGTCAT
GTCGACTGATAACT
BS06537.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1885-PA | 834 | CG1885-RA | 1..834 | 850..17 | 4170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:56:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1885-RB | 1711 | CG1885-RB | 205..1038 | 850..17 | 4170 | 100 | Minus |
CG1885-RA | 1229 | CG1885-RA | 205..1038 | 850..17 | 4170 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:56:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8899227..8900060 | 17..850 | 4170 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:56:15 has no hits.
BS06537.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:44:12 Download gff for
BS06537.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1885-PA | 1..834 | 17..850 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:24:20 Download gff for
BS06537.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1885-PA | 1..834 | 17..850 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:49:10 Download gff for
BS06537.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1885-RA | 198..1042 | 12..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:31:52 Download gff for
BS06537.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1885-RA | 198..1042 | 12..858 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:31:52 Download gff for
BS06537.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8899223..8900067 | 12..858 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:49:10 Download gff for
BS06537.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8793256..8794100 | 12..858 | 99 | | Plus |
BS06537.5prime Sequence
775 bp (774 high quality bases) assembled on 2005-12-03
> BS06537.5prime
GAAGTTATCAGTCGACATGACGAGTCGCCAGCGAACTGTGATCATATTCA
AATCGGAATCGGAAAGCAGCGATGTGTACGCAGAAACGCTGGAGAAGCAC
GATTTCAATCCCGTCTTTGTGCCCACGCTGAGTTTCGGCTTCAAGAATCT
CGATGAGCTGCGCGCCAAGCTTCAGAATCCGGATAAATATGCCGGCATCA
TATTCACATCGCCGCGCTGCGTGGAGGCCGTGGCTGAATCCCTCAATCTC
GGCGAGCTACCCGGCGGTTGGAAGATGTTGCATAACTATGCCGTCGGCGA
GGTGACCCACAATCTGGCGCTAAGCACCTTGGACCAGCTATTCACCCACG
GCAAACAGACGGGCAATGCCCGGGCATTGGGCGACTATATAGTGGATACG
TTCGATGGATCGCGTGCATTGCCGCTACTATTGCCATGCGGTAATCTGGC
CACCGATACGCTGCTATCCAAGCTGGCCGAGAATGGCTTCTCCGTGGATG
CGTGCGAAGTGTACGAGACGCGCTGTCATCCCGAATTGGGCGCCAATGTG
GAGAGGGCATTGGAGATTTATGGCGAGTCGATTGAATTTCTTGCCTTCTT
CTCGCCATCGGGCGTCAATTGTGCACAGCAGTACTTCACCAGCCGTCAGC
TATCGATGGACAAATGGAAGCTGGTGGCCATCGGGCCGAGCACTAGGCGT
GCCCTCGAATCGCTGGGCCAAAAGGTTTACTGCACCGCCGAGCGGCCGAC
GGTGGAGCATCTGGTCAAGGTGCTG
BS06537.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1885-PA | 834 | CG1885-RA | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:56:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1885-RB | 1711 | CG1885-RB | 205..963 | 17..775 | 3795 | 100 | Plus |
CG1885-RA | 1229 | CG1885-RA | 205..963 | 17..775 | 3795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:56:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8899302..8900060 | 775..17 | 3795 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:56:13 has no hits.
BS06537.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:44:13 Download gff for
BS06537.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1885-PA | 1..759 | 17..775 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:24:21 Download gff for
BS06537.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1885-PA | 1..759 | 17..775 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:17:01 Download gff for
BS06537.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1885-RA | 198..963 | 9..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:52:46 Download gff for
BS06537.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1885-RA | 198..963 | 9..775 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:52:46 Download gff for
BS06537.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8899302..8900067 | 9..775 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:17:01 Download gff for
BS06537.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8793335..8794100 | 9..775 | 99 | | Minus |
BS06537.complete Sequence
866 bp (866 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635534
> BS06537.complete
GAAGTTATCAGTCGACATGACGAGTCGCCAGCGAACTGTGATCATATTCA
AATCGGAATCGGAAAGCAGCGATGTGTACGCAGAAACGCTGGAGAAGCAC
GATTTCAATCCCGTCTTTGTGCCCACGCTGAGTTTCGGCTTCAAGAATCT
CGATGAGCTGCGCGCCAAGCTTCAGAATCCGGATAAATATGCCGGCATCA
TATTCACATCGCCGCGCTGCGTGGAGGCCGTGGCTGAATCCCTCAATCTC
GGCGAGCTACCCGGCGGTTGGAAGATGTTGCATAACTATGCCGTCGGCGA
GGTGACCCACAATCTGGCGCTAAGCACCTTGGACCAGCTATTCACCCACG
GCAAACAGACGGGCAATGCCCGGGCATTGGGCGACTATATAGTGGATACG
TTCGATGGATCGCGTGCATTGCCGCTACTATTGCCATGCGGTAATCTGGC
CACCGATACGCTGCTATCCAAGCTGGCCGAGAATGGCTTCTCCGTGGATG
CGTGCGAAGTGTACGAGACGCGCTGTCATCCCGAATTGGGCGCCAATGTG
GAGAGGGCATTGGAGATTTATGGCGAGTCGATTGAATTTCTTGCCTTCTT
CTCGCCATCGGGCGTCAATTGTGCACAGCAGTACTTCACCAGCCGTCAGC
TATCGATGGACAAATGGAAGCTGGTGGCCATCGGGCCGAGCACTAGGCGT
GCCCTCGAATCGCTGGGCCAAAAGGTTTACTGCACCGCCGAGCGGCCGAC
GGTGGAGCATCTGGTCAAGGTGCTGCTCAATCCGCAGGACAGTCGGGAGC
GGTTGCTCAAGGAGCGCGAACGGATGGCCGCCATCGAGAATAACAATTAA
AAGCTTTCTAGACCAT
BS06537.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:04:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1885-RB | 834 | CG1885-PB | 1..834 | 17..850 | 4170 | 100 | Plus |
CG1885-RA | 834 | CG1885-PA | 1..834 | 17..850 | 4170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:04:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1885-RB | 1711 | CG1885-RB | 205..1038 | 17..850 | 4170 | 100 | Plus |
CG1885-RA | 1229 | CG1885-RA | 205..1038 | 17..850 | 4170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:03:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8899227..8900060 | 850..17 | 4170 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:04:00 has no hits.
BS06537.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:31 Download gff for
BS06537.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1885-RA | 1..834 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:57:12 Download gff for
BS06537.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1885-RA | 112..956 | 9..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:36 Download gff for
BS06537.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1885-RA | 205..1036 | 17..848 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:31 Download gff for
BS06537.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1885-RA | 112..956 | 9..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:04 Download gff for
BS06537.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1885-RA | 205..1036 | 17..848 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:12:04 Download gff for
BS06537.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8899229..8900060 | 17..848 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:36 Download gff for
BS06537.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8793262..8794093 | 17..848 | 100 | | Minus |
BS06537.pep Sequence
Translation from 16 to 849
> BS06537.pep
MTSRQRTVIIFKSESESSDVYAETLEKHDFNPVFVPTLSFGFKNLDELRA
KLQNPDKYAGIIFTSPRCVEAVAESLNLGELPGGWKMLHNYAVGEVTHNL
ALSTLDQLFTHGKQTGNARALGDYIVDTFDGSRALPLLLPCGNLATDTLL
SKLAENGFSVDACEVYETRCHPELGANVERALEIYGESIEFLAFFSPSGV
NCAQQYFTSRQLSMDKWKLVAIGPSTRRALESLGQKVYCTAERPTVEHLV
KVLLNPQDSRERLLKERERMAAIENNN*
BS06537.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1885-PB | 277 | CG1885-PB | 1..277 | 1..277 | 1433 | 100 | Plus |
CG1885-PA | 277 | CG1885-PA | 1..277 | 1..277 | 1433 | 100 | Plus |
CG9589-PA | 253 | CG9589-PA | 1..251 | 1..253 | 513 | 41.9 | Plus |