Clone BS06538 Report

Search the DGRC for BS06538

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:65
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCG7778-RA
Protein status:BS06538.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06538.3prime Sequence

840 bp (839 high quality bases) assembled on 2005-12-03

> BS06538.3prime
ATGGTCTAGAAAGCTTCTAGTTGCGCTGCAGGGCGAATGCCACGATGGCC
AGGAGCAGGGTGGCCAGAATGGAGCTCTGGAGCGCCGAGCTGCCGTTACA
GGCGTTCATACTGCACGGATTGCAGTTGGCCAGCTCCGTGTTTTTGTTCT
GAATCTTTAGCTGCTCGCAAACACCTTCCATGGTGCTCACCCGGGAGCAG
CCGCGATCCGTCGACATTGTGCCATTCACTGAAACCTGAACGGAATAGCA
GTGGTAGGTGTAGTCGGTATCGATCACCGCCCTGCGTTGCCTGATTGCCA
GCGATGACGTGGGCGTTGTGGTCCCCTCGTCCTTATTCACTGGCACCAAA
CGGGTGGTGTTCAAGGCCACCGACATGGCGGACAGATCCTCAGCGGGTGG
CGTGGGCACTCCGGTGGTCGTTTCGACGGGTCCGGCGGTTCCCGGCGTGG
GTATCGGAGCCTCGGTGCTTTCAGTGCTCTGGGTGCTCTCGGTGGTCGGA
TCGCTGGTGGTGGTTTCCACTGTCGTCGTCGTGGACTCCGTTGTGGGTGA
ATCCGTTTGGACACTTGTCACAATCAAAGTGGTTGTTTCCGGTGTTGTTG
TAGTCTCCTGCGTCGTAGTGGTGCTCGCTTCGGTGGTGGTCACCGTGGAG
GCTTCTGTGCTGCCGCCGGGATTAAAGAAATCCTCATTGCACGCCAGCAG
GGGTGCATCCTTCGGTAGCTGGGCACAATTATCGCACACATAGCACATGA
GATCGGCGCGAATTACTGGCAGGGCGATTAACAACAGCAAAGAGCTGGCC
AAAACGATGTGACTTTTGGGGAACATGTCGACTGATAACT

BS06538.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7778-PA 810 CG7778-RA 1..810 826..17 4050 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:32:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG7778-RB 2152 CG7778-RB 185..996 827..16 4060 100 Minus
CG7778-RA 1237 CG7778-RA 185..996 827..16 4060 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:32:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8349072..8349611 768..229 2700 100 Minus
2L 23513712 2L 8349742..8349956 230..16 1075 100 Minus
2L 23513712 2L 8346804..8346865 827..766 310 100 Minus
Blast to na_te.dros performed 2015-02-01 08:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2376..2463 668..582 113 60.2 Minus

BS06538.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:44:14 Download gff for BS06538.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7778-PA 1..810 17..826 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:24:22 Download gff for BS06538.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7778-PA 1..810 17..826 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:25:56 Download gff for BS06538.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7778-RA 185..996 16..827 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:53:04 Download gff for BS06538.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7778-RA 185..996 16..827 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:53:04 Download gff for BS06538.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8346804..8346865 766..827 100 -> Minus
2L 8349075..8349611 229..765 100 -> Minus
2L 8349744..8349956 16..228 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:25:56 Download gff for BS06538.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8346804..8346865 766..827 100 -> Minus
arm_2L 8349075..8349611 229..765 100 -> Minus
arm_2L 8349744..8349956 16..228 100   Minus

BS06538.5prime Sequence

840 bp (839 high quality bases) assembled on 2005-12-03

> BS06538.5prime
GAAGTTATCAGTCGACATGTTCCCCAAAAGTCACATCGTTTTGGCCAGCT
CTTTGCTGTTGTTAATCGCCCTGCCAGTAATTCGCGCCGATCTCATGTGC
TATGTGTGCGATAATTGTGCCCAGCTACCGAAGGATGCACCCCTGCTGGC
GTGCAATGAGGATTTCTTTAATCCCGGCGGCAGCACAGAAGCCTCCACGG
TGACCACCACCGAAGCGAGCACCACTACGACGCAGGAGACTACAACAACA
CCGGAAACAACCACTTTGATTGTGACAAGTGTCCAAACGGATTCACCCAC
AACGGAGTCCACGACGACGACAGTGGAAACCACCACCAGCGATCCGACCA
CCGAGAGCACCCAGAGCACTGAAAGCACCGAGGCTCCGATACCCACGCCG
GGAACCGCCGGACCCGTCGAAACGACCACCGGAGTGCCCACGCCACCCGC
TGAGGATCTGTCCGCCATGTCGGTGGCCTTGAACACCACCCGTTTGGTGC
CAGTGAATAAGGACGAGGGGACCACAACGCCCACGTCATCGCTGGCAATC
AGGCAACGCAGGGCGGTGATCGATACCGACTACACCTACCACTGCTATTC
CGTTCAGGTTTCAGTGAATGGCACAATGTCGACGGATCGCGGCTGCTCCC
GGGTGAGCACCATGGAAGGTGTTTGCGAGCAGCTAAAGATTCAGAACAAA
AACACGGAGCTGGCCAACTGCAATCCGTGCAGTATGAACGCCTGTAACGG
CAGCTCGGCGCTCCAGAGCTCCATTCTGGCCACCCTGCTCCTGGCCATCG
TGGCATTCGCCCTGCAGCGCAACTAGAAGCTTTCTAGACC

BS06538.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7778-PA 810 CG7778-RA 1..810 17..826 4050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:31:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG7778-RB 2152 CG7778-RB 185..996 16..827 4060 100 Plus
CG7778-RA 1237 CG7778-RA 185..996 16..827 4060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:31:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8349072..8349611 75..614 2700 100 Plus
2L 23513712 2L 8349742..8349956 613..827 1075 100 Plus
2L 23513712 2L 8346804..8346865 16..77 310 100 Plus
Blast to na_te.dros performed 2015-02-11 09:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2376..2463 175..261 113 60.2 Plus

BS06538.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:44:16 Download gff for BS06538.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7778-PA 1..810 17..826 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:24:24 Download gff for BS06538.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7778-PA 1..810 17..826 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:12:44 Download gff for BS06538.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7778-RA 185..996 16..827 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:59:38 Download gff for BS06538.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7778-RA 185..996 16..827 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:59:38 Download gff for BS06538.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8346804..8346865 16..77 100 -> Plus
2L 8349075..8349611 78..614 100 -> Plus
2L 8349744..8349956 615..827 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:12:44 Download gff for BS06538.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8346804..8346865 16..77 100 -> Plus
arm_2L 8349075..8349611 78..614 100 -> Plus
arm_2L 8349744..8349956 615..827 100   Plus

BS06538.complete Sequence

842 bp (842 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635535

> BS06538.complete
GAAGTTATCAGTCGACATGTTCCCCAAAAGTCACATCGTTTTGGCCAGCT
CTTTGCTGTTGTTAATCGCCCTGCCAGTAATTCGCGCCGATCTCATGTGC
TATGTGTGCGATAATTGTGCCCAGCTACCGAAGGATGCACCCCTGCTGGC
GTGCAATGAGGATTTCTTTAATCCCGGCGGCAGCACAGAAGCCTCCACGG
TGACCACCACCGAAGCGAGCACCACTACGACGCAGGAGACTACAACAACA
CCGGAAACAACCACTTTGATTGTGACAAGTGTCCAAACGGATTCACCCAC
AACGGAGTCCACGACGACGACAGTGGAAACCACCACCAGCGATCCGACCA
CCGAGAGCACCCAGAGCACTGAAAGCACCGAGGCTCCGATACCCACGCCG
GGAACCGCCGGACCCGTCGAAACGACCACCGGAGTGCCCACGCCACCCGC
TGAGGATCTGTCCGCCATGTCGGTGGCCTTGAACACCACCCGTTTGGTGC
CAGTGAATAAGGACGAGGGGACCACAACGCCCACGTCATCGCTGGCAATC
AGGCAACGCAGGGCGGTGATCGATACCGACTACACCTACCACTGCTATTC
CGTTCAGGTTTCAGTGAATGGCACAATGTCGACGGATCGCGGCTGCTCCC
GGGTGAGCACCATGGAAGGTGTTTGCGAGCAGCTAAAGATTCAGAACAAA
AACACGGAGCTGGCCAACTGCAATCCGTGCAGTATGAACGCCTGTAACGG
CAGCTCGGCGCTCCAGAGCTCCATTCTGGCCACCCTGCTCCTGGCCATCG
TGGCATTCGCCCTGCAGCGCAACTAGAAGCTTTCTAGACCAT

BS06538.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:00:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG7778-RB 810 CG7778-PB 1..810 17..826 4050 100 Plus
CG7778-RA 810 CG7778-PA 1..810 17..826 4050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG7778-RB 2152 CG7778-RB 185..996 16..827 4060 100 Plus
CG7778-RA 1237 CG7778-RA 185..996 16..827 4060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8349072..8349611 75..614 2700 100 Plus
2L 23513712 2L 8349742..8349956 613..827 1075 100 Plus
2L 23513712 2L 8346804..8346865 16..77 310 100 Plus
Blast to na_te.dros performed 2014-11-26 16:00:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2376..2463 175..261 113 60.2 Plus

BS06538.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:32 Download gff for BS06538.complete
Subject Subject Range Query Range Percent Splice Strand
CG7778-RA 1..810 17..826 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:49 Download gff for BS06538.complete
Subject Subject Range Query Range Percent Splice Strand
CG7778-RA 184..995 16..827 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:49:58 Download gff for BS06538.complete
Subject Subject Range Query Range Percent Splice Strand
CG7778-RA 191..995 22..826 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:33 Download gff for BS06538.complete
Subject Subject Range Query Range Percent Splice Strand
CG7778-RA 184..995 16..827 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:02 Download gff for BS06538.complete
Subject Subject Range Query Range Percent Splice Strand
CG7778-RA 191..995 22..826 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:02 Download gff for BS06538.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8346810..8346865 22..77 100 -> Plus
2L 8349075..8349611 78..614 100 -> Plus
2L 8349744..8349955 615..826 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:49:58 Download gff for BS06538.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8346810..8346865 22..77 100 -> Plus
arm_2L 8349075..8349611 78..614 100 -> Plus
arm_2L 8349744..8349955 615..826 100   Plus

BS06538.pep Sequence

Translation from 16 to 825

> BS06538.pep
MFPKSHIVLASSLLLLIALPVIRADLMCYVCDNCAQLPKDAPLLACNEDF
FNPGGSTEASTVTTTEASTTTTQETTTTPETTTLIVTSVQTDSPTTESTT
TTVETTTSDPTTESTQSTESTEAPIPTPGTAGPVETTTGVPTPPAEDLSA
MSVALNTTRLVPVNKDEGTTTPTSSLAIRQRRAVIDTDYTYHCYSVQVSV
NGTMSTDRGCSRVSTMEGVCEQLKIQNKNTELANCNPCSMNACNGSSALQ
SSILATLLLAIVAFALQRN*

BS06538.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7778-PB 269 CG7778-PB 1..269 1..269 1372 100 Plus
CG7778-PA 269 CG7778-PA 1..269 1..269 1372 100 Plus
Muc96D-PA 881 CG31439-PA 575..735 60..220 198 31.7 Plus
Muc96D-PA 881 CG31439-PA 424..541 56..173 194 39 Plus
Muc96D-PA 881 CG31439-PA 438..599 56..220 192 31.9 Plus
Muc4B-PC 496 CG32774-PC 246..399 56..197 192 35.1 Plus
Muc4B-PB 496 CG32774-PB 246..399 56..197 192 35.1 Plus
Muc96D-PA 881 CG31439-PA 152..311 56..215 190 30.6 Plus
Muc96D-PA 881 CG31439-PA 228..387 56..215 190 31.2 Plus
Muc96D-PA 881 CG31439-PA 492..656 53..220 189 30.4 Plus
Muc96D-PA 881 CG31439-PA 185..344 56..215 189 30.6 Plus
Muc96D-PA 881 CG31439-PA 325..440 60..175 189 38.8 Plus
Muc96D-PA 881 CG31439-PA 408..564 56..215 188 31.9 Plus
Muc96D-PA 881 CG31439-PA 168..327 56..215 187 30.6 Plus
Muc96D-PA 881 CG31439-PA 206..382 53..220 187 30.5 Plus
Muc96D-PA 881 CG31439-PA 346..505 56..215 186 30.6 Plus
Muc96D-PA 881 CG31439-PA 538..738 56..256 186 26.9 Plus
Muc96D-PA 881 CG31439-PA 201..360 56..215 185 30.6 Plus
Muc96D-PA 881 CG31439-PA 268..435 56..220 185 31.5 Plus
Muc96D-PA 881 CG31439-PA 291..460 53..220 185 31.2 Plus
Muc96D-PA 881 CG31439-PA 143..343 56..256 184 26.4 Plus
Muc96D-PA 881 CG31439-PA 601..763 53..222 181 31.8 Plus
Muc96D-PA 881 CG31439-PA 357..544 53..237 180 27.7 Plus
Muc96D-PA 881 CG31439-PA 138..252 56..175 178 37.5 Plus
Muc4B-PC 496 CG32774-PC 224..383 58..215 178 33.3 Plus
Muc96D-PA 881 CG31439-PA 353..517 56..220 177 31.3 Plus
Muc96D-PA 881 CG31439-PA 281..481 56..256 175 26.3 Plus
Muc96D-PA 881 CG31439-PA 112..310 56..256 174 26.4 Plus
Muc96D-PA 881 CG31439-PA 336..495 56..215 174 29.4 Plus
Muc96D-PA 881 CG31439-PA 462..587 53..175 173 35.7 Plus
Muc96D-PA 881 CG31439-PA 475..634 56..215 173 30 Plus
Muc96D-PA 881 CG31439-PA 502..661 56..215 172 29.4 Plus
Muc4B-PC 496 CG32774-PC 183..321 61..175 168 38.8 Plus
Muc96D-PA 881 CG31439-PA 646..783 56..205 167 34.7 Plus
Muc96D-PA 881 CG31439-PA 689..803 56..165 164 36.5 Plus
Muc96D-PA 881 CG31439-PA 667..786 56..178 161 35 Plus