Clone BS06539 Report

Search the DGRC for BS06539

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:65
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptCG8768-RA
Protein status:BS06539.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06539.3prime Sequence

882 bp (857 high quality bases) assembled on 2005-12-03

> BS06539.3prime
ATGGTCTAGAAAGCTTTTATCCTTTGAGGGTCAGTTGCGTCACAGCCTCT
TTGACGCTGGGATATTGAAATTTAAATCCGGATGATAGAGCTTTCTGTGG
CTTGACCTTGGCACCACTTAAAACCAGAGCTGCCCGCTCTGGTCCAAAGA
TGGCTTGGACAACAAACTCTGGAACGCCGAAGATACACGGGCGATGAAGT
GCTTTGGCAAAGGCTTTGCTAAACTCCAAATTGCTGGTTATTTCTGGGGC
CACCGCATTGACCACTCCTGGCACTGGTTTCTCTATGATGTACTGTATCA
AGCTGCACAGATCGTGCAGGTGTATCCATGGCATTATTTGGTTTCCATTA
CCCAATGGTCCTCCTACGCCAAACTTAAAGGGCAGCCACATGGACTGAAC
CATGCCCCCGCCATGACCCACAACAGCGCCACACCGCAGGATGGTGGTTT
TACAATCCTGCTCACTACCAGTGTGTGCAGCCTCCTCCCAGGCCAAGCAC
AACCTGGACATGTAGTCGAATCCTTGCACCTGATCCTCCTCGGTGTAAAC
CTTGGACTCCGAGGGTTTATAGTGACTCACACCGCATAGATTCACGAAAG
ATGAGACCTGGGGAGCCGACTTAATAGCCTGAGCCAAAGTTTTTGAGGAG
TTGATTCGCGAGTTCCACACATTCTGCTGGAATCCTGGAGTCCAGCGTCT
CGTTGGATCCAATGTGTTCTGGCCCGTGGCATTTACCACGGCGTTTACGG
ATCCGGGAATACCATTCTTCTCCAGCTCGTGCCAGGTGATACGCTTCGCA
CCTGGCATGCGGGAGATCACCGTCACATCGTAACCCTTTTTGGTCAAATG
GGTAGCCAGGTTGCGACCGATGAAGCCAGTGC

BS06539.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8768-PA 909 CG8768-RA 44..909 882..17 4305 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG8768-RA 1210 CG8768-RA 115..980 882..17 4315 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:54:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12692081..12692517 446..882 2170 99.8 Plus
2R 25286936 2R 12691791..12692022 214..445 1160 100 Plus
2R 25286936 2R 12691538..12691735 17..214 990 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:54:44 has no hits.

BS06539.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:44:17 Download gff for BS06539.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8768-PA 44..909 17..882 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:24:25 Download gff for BS06539.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8768-PA 44..909 17..882 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:43:14 Download gff for BS06539.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8768-RA 115..980 17..882 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:39 Download gff for BS06539.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8768-RA 115..980 17..882 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:39 Download gff for BS06539.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12691538..12691735 17..214 100 <- Plus
2R 12691792..12692022 215..445 100 <- Plus
2R 12692081..12692517 446..882 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:43:14 Download gff for BS06539.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8579043..8579240 17..214 100 <- Plus
arm_2R 8579297..8579527 215..445 100 <- Plus
arm_2R 8579586..8580022 446..882 99   Plus

BS06539.5prime Sequence

827 bp (770 high quality bases) assembled on 2005-12-03

> BS06539.5prime
GAAGTTATCAGTCGACATGATTATTCCAAAAATGTCGAGGCATGCTCTGA
TAGGTGGTGGCACTGGCTTCATCGGTCGCAACCTGGCTAACCATTTGACC
AAAAAGGGTTACGATGTGACGGTGATCTCCCGCATGCCAGGTGCGAAGCG
TATCACCTGGCACGAGCTGGAGAAGAATGGTATTCCCGGATCCGTAAACG
CCGTGGTAAATGCCACGGGCCAGAACACATTGGATCCAACGAGACGCTGG
ACTCCAGGATTCCAGCAGAATGTGTGGAACTCGCGAATCAACTCCTCAAA
AACTTTGGCTCAGGCTATTAAGTCGGCTCCCCAGGTCTCATCTTTCGTGA
ATCTATGCGGTGTGAGTCACTATAAACCCTCGGAGTCCAAGGTTTACACC
GAGGAGGATCAGGTGCAAGGATTCGACTACATGTCCAGGTTGTGCTTGGC
CTGGGAGGAGGCTGCACACACTGGTAGTGAGCAGGATTGTAAAACCACCA
TCCTGCGGTGTGGCGCTGTTGTGGGTCATGGCGGGGGCATGGTTCAGTCC
ATGTGGCTGCCCTTTAAGTTTGGCGTAGGAGGACCATTGGGTAATGGAAA
CCAAATAATGCCATGGATACACCTGCACGATCTGTGCAGCTTGATACAGT
ACATCATAGAGAAACCAGTGCCAGGAGTGGTCAATGCGGTGGCCCCAGAA
ATAACCAGCAATTTGGAGTTTAGCAAAGCCTTTGCCAAAGCACTTCATCG
CCCGTGTATCTTCGGCGTTCCAGAGTTTGTTGTCCAAGCCATCTTTGGAC
CAGAGCGGGCAGCTCTGGTTTNAAGTG

BS06539.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8768-PA 909 CG8768-RA 1..811 17..827 4036 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:26:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8768-RA 1210 CG8768-RA 72..882 17..827 4044 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:26:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12692081..12692525 496..52 2225 100 Minus
2R 25286936 2R 12691791..12692022 728..497 1160 100 Minus
2R 25286936 2R 12691636..12691735 827..728 489 99 Minus
2R 25286936 2R 12692581..12692619 55..17 195 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:26:14 has no hits.

BS06539.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:44:18 Download gff for BS06539.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8768-PA 1..811 17..827 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:24:26 Download gff for BS06539.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8768-PA 1..811 17..827 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:38:48 Download gff for BS06539.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8768-RA 68..882 12..827 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:45:29 Download gff for BS06539.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8768-RA 68..882 12..827 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:45:29 Download gff for BS06539.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12691636..12691735 728..827 99 <- Minus
2R 12691792..12692022 497..727 100 <- Minus
2R 12692081..12692523 54..496 100 <- Minus
2R 12692583..12692623 12..53 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:38:48 Download gff for BS06539.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8579141..8579240 728..827 99 <- Minus
arm_2R 8579297..8579527 497..727 100 <- Minus
arm_2R 8579586..8580028 54..496 100 <- Minus
arm_2R 8580088..8580128 12..53 92   Minus

BS06539.complete Sequence

941 bp (941 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635536

> BS06539.complete
GAAGTTATCAGTCGACATGATTATTCCAAAAATGTCGAGGCATGCTCTGA
TAGGTGGTGGCACTGGCTTCATCGGTCGCAACCTGGCTAACCATTTGACC
AAAAAGGGTTACGATGTGACGGTGATCTCCCGCATGCCAGGTGCGAAGCG
TATCACCTGGCACGAGCTGGAGAAGAATGGTATTCCCGGATCCGTAAACG
CCGTGGTAAATGCCACGGGCCAGAACACATTGGATCCAACGAGACGCTGG
ACTCCAGGATTCCAGCAGAATGTGTGGAACTCGCGAATCAACTCCTCAAA
AACTTTGGCTCAGGCTATTAAGTCGGCTCCCCAGGTCTCATCTTTCGTGA
ATCTATGCGGTGTGAGTCACTATAAACCCTCGGAGTCCAAGGTTTACACC
GAGGAGGATCAGGTGCAAGGATTCGACTACATGTCCAGGTTGTGCTTGGC
CTGGGAGGAGGCTGCACACACTGGTAGTGAGCAGGATTGTAAAACCACCA
TCCTGCGGTGTGGCGCTGTTGTGGGTCATGGCGGGGGCATGGTTCAGTCC
ATGTGGCTGCCCTTTAAGTTTGGCGTAGGAGGACCATTGGGTAATGGAAA
CCAAATAATGCCATGGATACACCTGCACGATCTGTGCAGCTTGATACAGT
ACATCATAGAGAAACCAGTGCCAGGAGTGGTCAATGCGGTGGCCCCAGAA
ATAACCAGCAATTTGGAGTTTAGCAAAGCCTTTGCCAAAGCACTTCATCG
CCCGTGTATCTTCGGCGTTCCAGAGTTTGTTGTCCAAGCCATCTTTGGAC
CAGAGCGGGCAGCTCTGGTTTTAAGTGGTGCCAAGGTCAAGCCACAGAAA
GCTCTATCATCCGGATTTAAATTTCAATATCCCAGCGTCAAAGAGGCTGT
GACGCAACTGACCCTCAAAGGATAAAAGCTTTCTAGACCAT

BS06539.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG8768-RA 909 CG8768-PA 1..909 17..925 4545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG8768-RA 1210 CG8768-RA 72..980 17..925 4545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:10:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12692081..12692525 496..52 2225 100 Minus
2R 25286936 2R 12691791..12692022 728..497 1160 100 Minus
2R 25286936 2R 12691538..12691735 925..728 990 100 Minus
2R 25286936 2R 12692581..12692619 55..17 195 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:10:55 has no hits.

BS06539.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:10 Download gff for BS06539.complete
Subject Subject Range Query Range Percent Splice Strand
CG8768-RA 1..909 17..925 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:06 Download gff for BS06539.complete
Subject Subject Range Query Range Percent Splice Strand
CG8768-RA 66..978 12..925 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:49:30 Download gff for BS06539.complete
Subject Subject Range Query Range Percent Splice Strand
CG8768-RA 72..978 17..923 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:11 Download gff for BS06539.complete
Subject Subject Range Query Range Percent Splice Strand
CG8768-RA 66..978 12..925 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:53:31 Download gff for BS06539.complete
Subject Subject Range Query Range Percent Splice Strand
CG8768-RA 72..978 17..923 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:53:31 Download gff for BS06539.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12691540..12691735 728..923 100 <- Minus
2R 12691792..12692022 497..727 100 <- Minus
2R 12692081..12692523 54..496 100 <- Minus
2R 12692583..12692619 17..53 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:49:30 Download gff for BS06539.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8579045..8579240 728..923 100 <- Minus
arm_2R 8579297..8579527 497..727 100 <- Minus
arm_2R 8579586..8580028 54..496 100 <- Minus
arm_2R 8580088..8580124 17..53 100   Minus

BS06539.pep Sequence

Translation from 16 to 924

> BS06539.pep
MIIPKMSRHALIGGGTGFIGRNLANHLTKKGYDVTVISRMPGAKRITWHE
LEKNGIPGSVNAVVNATGQNTLDPTRRWTPGFQQNVWNSRINSSKTLAQA
IKSAPQVSSFVNLCGVSHYKPSESKVYTEEDQVQGFDYMSRLCLAWEEAA
HTGSEQDCKTTILRCGAVVGHGGGMVQSMWLPFKFGVGGPLGNGNQIMPW
IHLHDLCSLIQYIIEKPVPGVVNAVAPEITSNLEFSKAFAKALHRPCIFG
VPEFVVQAIFGPERAALVLSGAKVKPQKALSSGFKFQYPSVKEAVTQLTL
KG*

BS06539.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG8768-PA 302 CG8768-PA 1..302 1..302 1597 100 Plus