Clone Sequence Records
BS06539.3prime Sequence
882 bp (857 high quality bases) assembled on 2005-12-03
> BS06539.3prime
ATGGTCTAGAAAGCTTTTATCCTTTGAGGGTCAGTTGCGTCACAGCCTCT
TTGACGCTGGGATATTGAAATTTAAATCCGGATGATAGAGCTTTCTGTGG
CTTGACCTTGGCACCACTTAAAACCAGAGCTGCCCGCTCTGGTCCAAAGA
TGGCTTGGACAACAAACTCTGGAACGCCGAAGATACACGGGCGATGAAGT
GCTTTGGCAAAGGCTTTGCTAAACTCCAAATTGCTGGTTATTTCTGGGGC
CACCGCATTGACCACTCCTGGCACTGGTTTCTCTATGATGTACTGTATCA
AGCTGCACAGATCGTGCAGGTGTATCCATGGCATTATTTGGTTTCCATTA
CCCAATGGTCCTCCTACGCCAAACTTAAAGGGCAGCCACATGGACTGAAC
CATGCCCCCGCCATGACCCACAACAGCGCCACACCGCAGGATGGTGGTTT
TACAATCCTGCTCACTACCAGTGTGTGCAGCCTCCTCCCAGGCCAAGCAC
AACCTGGACATGTAGTCGAATCCTTGCACCTGATCCTCCTCGGTGTAAAC
CTTGGACTCCGAGGGTTTATAGTGACTCACACCGCATAGATTCACGAAAG
ATGAGACCTGGGGAGCCGACTTAATAGCCTGAGCCAAAGTTTTTGAGGAG
TTGATTCGCGAGTTCCACACATTCTGCTGGAATCCTGGAGTCCAGCGTCT
CGTTGGATCCAATGTGTTCTGGCCCGTGGCATTTACCACGGCGTTTACGG
ATCCGGGAATACCATTCTTCTCCAGCTCGTGCCAGGTGATACGCTTCGCA
CCTGGCATGCGGGAGATCACCGTCACATCGTAACCCTTTTTGGTCAAATG
GGTAGCCAGGTTGCGACCGATGAAGCCAGTGC
BS06539.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8768-PA | 909 | CG8768-RA | 44..909 | 882..17 | 4305 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:54:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8768-RA | 1210 | CG8768-RA | 115..980 | 882..17 | 4315 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:54:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12692081..12692517 | 446..882 | 2170 | 99.8 | Plus |
2R | 25286936 | 2R | 12691791..12692022 | 214..445 | 1160 | 100 | Plus |
2R | 25286936 | 2R | 12691538..12691735 | 17..214 | 990 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:54:44 has no hits.
BS06539.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:44:17 Download gff for
BS06539.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8768-PA | 44..909 | 17..882 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:24:25 Download gff for
BS06539.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8768-PA | 44..909 | 17..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:43:14 Download gff for
BS06539.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8768-RA | 115..980 | 17..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:39 Download gff for
BS06539.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8768-RA | 115..980 | 17..882 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:39 Download gff for
BS06539.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12691538..12691735 | 17..214 | 100 | <- | Plus |
2R | 12691792..12692022 | 215..445 | 100 | <- | Plus |
2R | 12692081..12692517 | 446..882 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:43:14 Download gff for
BS06539.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8579043..8579240 | 17..214 | 100 | <- | Plus |
arm_2R | 8579297..8579527 | 215..445 | 100 | <- | Plus |
arm_2R | 8579586..8580022 | 446..882 | 99 | | Plus |
BS06539.5prime Sequence
827 bp (770 high quality bases) assembled on 2005-12-03
> BS06539.5prime
GAAGTTATCAGTCGACATGATTATTCCAAAAATGTCGAGGCATGCTCTGA
TAGGTGGTGGCACTGGCTTCATCGGTCGCAACCTGGCTAACCATTTGACC
AAAAAGGGTTACGATGTGACGGTGATCTCCCGCATGCCAGGTGCGAAGCG
TATCACCTGGCACGAGCTGGAGAAGAATGGTATTCCCGGATCCGTAAACG
CCGTGGTAAATGCCACGGGCCAGAACACATTGGATCCAACGAGACGCTGG
ACTCCAGGATTCCAGCAGAATGTGTGGAACTCGCGAATCAACTCCTCAAA
AACTTTGGCTCAGGCTATTAAGTCGGCTCCCCAGGTCTCATCTTTCGTGA
ATCTATGCGGTGTGAGTCACTATAAACCCTCGGAGTCCAAGGTTTACACC
GAGGAGGATCAGGTGCAAGGATTCGACTACATGTCCAGGTTGTGCTTGGC
CTGGGAGGAGGCTGCACACACTGGTAGTGAGCAGGATTGTAAAACCACCA
TCCTGCGGTGTGGCGCTGTTGTGGGTCATGGCGGGGGCATGGTTCAGTCC
ATGTGGCTGCCCTTTAAGTTTGGCGTAGGAGGACCATTGGGTAATGGAAA
CCAAATAATGCCATGGATACACCTGCACGATCTGTGCAGCTTGATACAGT
ACATCATAGAGAAACCAGTGCCAGGAGTGGTCAATGCGGTGGCCCCAGAA
ATAACCAGCAATTTGGAGTTTAGCAAAGCCTTTGCCAAAGCACTTCATCG
CCCGTGTATCTTCGGCGTTCCAGAGTTTGTTGTCCAAGCCATCTTTGGAC
CAGAGCGGGCAGCTCTGGTTTNAAGTG
BS06539.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8768-PA | 909 | CG8768-RA | 1..811 | 17..827 | 4036 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:26:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8768-RA | 1210 | CG8768-RA | 72..882 | 17..827 | 4044 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:26:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12692081..12692525 | 496..52 | 2225 | 100 | Minus |
2R | 25286936 | 2R | 12691791..12692022 | 728..497 | 1160 | 100 | Minus |
2R | 25286936 | 2R | 12691636..12691735 | 827..728 | 489 | 99 | Minus |
2R | 25286936 | 2R | 12692581..12692619 | 55..17 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:26:14 has no hits.
BS06539.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:44:18 Download gff for
BS06539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8768-PA | 1..811 | 17..827 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:24:26 Download gff for
BS06539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8768-PA | 1..811 | 17..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:38:48 Download gff for
BS06539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8768-RA | 68..882 | 12..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:45:29 Download gff for
BS06539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8768-RA | 68..882 | 12..827 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:45:29 Download gff for
BS06539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12691636..12691735 | 728..827 | 99 | <- | Minus |
2R | 12691792..12692022 | 497..727 | 100 | <- | Minus |
2R | 12692081..12692523 | 54..496 | 100 | <- | Minus |
2R | 12692583..12692623 | 12..53 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:38:48 Download gff for
BS06539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8579141..8579240 | 728..827 | 99 | <- | Minus |
arm_2R | 8579297..8579527 | 497..727 | 100 | <- | Minus |
arm_2R | 8579586..8580028 | 54..496 | 100 | <- | Minus |
arm_2R | 8580088..8580128 | 12..53 | 92 | | Minus |
BS06539.complete Sequence
941 bp (941 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635536
> BS06539.complete
GAAGTTATCAGTCGACATGATTATTCCAAAAATGTCGAGGCATGCTCTGA
TAGGTGGTGGCACTGGCTTCATCGGTCGCAACCTGGCTAACCATTTGACC
AAAAAGGGTTACGATGTGACGGTGATCTCCCGCATGCCAGGTGCGAAGCG
TATCACCTGGCACGAGCTGGAGAAGAATGGTATTCCCGGATCCGTAAACG
CCGTGGTAAATGCCACGGGCCAGAACACATTGGATCCAACGAGACGCTGG
ACTCCAGGATTCCAGCAGAATGTGTGGAACTCGCGAATCAACTCCTCAAA
AACTTTGGCTCAGGCTATTAAGTCGGCTCCCCAGGTCTCATCTTTCGTGA
ATCTATGCGGTGTGAGTCACTATAAACCCTCGGAGTCCAAGGTTTACACC
GAGGAGGATCAGGTGCAAGGATTCGACTACATGTCCAGGTTGTGCTTGGC
CTGGGAGGAGGCTGCACACACTGGTAGTGAGCAGGATTGTAAAACCACCA
TCCTGCGGTGTGGCGCTGTTGTGGGTCATGGCGGGGGCATGGTTCAGTCC
ATGTGGCTGCCCTTTAAGTTTGGCGTAGGAGGACCATTGGGTAATGGAAA
CCAAATAATGCCATGGATACACCTGCACGATCTGTGCAGCTTGATACAGT
ACATCATAGAGAAACCAGTGCCAGGAGTGGTCAATGCGGTGGCCCCAGAA
ATAACCAGCAATTTGGAGTTTAGCAAAGCCTTTGCCAAAGCACTTCATCG
CCCGTGTATCTTCGGCGTTCCAGAGTTTGTTGTCCAAGCCATCTTTGGAC
CAGAGCGGGCAGCTCTGGTTTTAAGTGGTGCCAAGGTCAAGCCACAGAAA
GCTCTATCATCCGGATTTAAATTTCAATATCCCAGCGTCAAAGAGGCTGT
GACGCAACTGACCCTCAAAGGATAAAAGCTTTCTAGACCAT
BS06539.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:10:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8768-RA | 909 | CG8768-PA | 1..909 | 17..925 | 4545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:10:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8768-RA | 1210 | CG8768-RA | 72..980 | 17..925 | 4545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:10:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12692081..12692525 | 496..52 | 2225 | 100 | Minus |
2R | 25286936 | 2R | 12691791..12692022 | 728..497 | 1160 | 100 | Minus |
2R | 25286936 | 2R | 12691538..12691735 | 925..728 | 990 | 100 | Minus |
2R | 25286936 | 2R | 12692581..12692619 | 55..17 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:10:55 has no hits.
BS06539.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:10 Download gff for
BS06539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8768-RA | 1..909 | 17..925 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:06 Download gff for
BS06539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8768-RA | 66..978 | 12..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:49:30 Download gff for
BS06539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8768-RA | 72..978 | 17..923 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:11 Download gff for
BS06539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8768-RA | 66..978 | 12..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:53:31 Download gff for
BS06539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8768-RA | 72..978 | 17..923 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:53:31 Download gff for
BS06539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12691540..12691735 | 728..923 | 100 | <- | Minus |
2R | 12691792..12692022 | 497..727 | 100 | <- | Minus |
2R | 12692081..12692523 | 54..496 | 100 | <- | Minus |
2R | 12692583..12692619 | 17..53 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:49:30 Download gff for
BS06539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8579045..8579240 | 728..923 | 100 | <- | Minus |
arm_2R | 8579297..8579527 | 497..727 | 100 | <- | Minus |
arm_2R | 8579586..8580028 | 54..496 | 100 | <- | Minus |
arm_2R | 8580088..8580124 | 17..53 | 100 | | Minus |
BS06539.pep Sequence
Translation from 16 to 924
> BS06539.pep
MIIPKMSRHALIGGGTGFIGRNLANHLTKKGYDVTVISRMPGAKRITWHE
LEKNGIPGSVNAVVNATGQNTLDPTRRWTPGFQQNVWNSRINSSKTLAQA
IKSAPQVSSFVNLCGVSHYKPSESKVYTEEDQVQGFDYMSRLCLAWEEAA
HTGSEQDCKTTILRCGAVVGHGGGMVQSMWLPFKFGVGGPLGNGNQIMPW
IHLHDLCSLIQYIIEKPVPGVVNAVAPEITSNLEFSKAFAKALHRPCIFG
VPEFVVQAIFGPERAALVLSGAKVKPQKALSSGFKFQYPSVKEAVTQLTL
KG*
BS06539.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8768-PA | 302 | CG8768-PA | 1..302 | 1..302 | 1597 | 100 | Plus |