Clone BS06543 Report

Search the DGRC for BS06543

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:65
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptRho1-RA
Protein status:BS06543.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06543.3prime Sequence

609 bp (608 high quality bases) assembled on 2005-12-03

> BS06543.3prime
ATGGTCTAGAAAGCTTTTAGAGCAAAAGGCATCTGGTCTTCTTCCTCTTT
TTGACTTGCAGCGCGGCCCTAGTTGCCGTCTCGAAAACATCTCGCACACC
CTCCTTGGACTTAGCCGAACACTCCAAATAGGCAAAGGCATTAATCTTCT
CGGCCATGGCGCGACCCTCCTGCGGCTTCACCGGCTCCTGCTTCATTTTT
GCTAGATCCCGAATTGTGTTGGGATCATTTCGCAAATCTTTCTTATTTCC
TACCAAAATGATTGGAACATTTGGACAAAAGTGTTTGACCTCTGGGGTCC
ATTTTTCAGGAATATTTTCTAGCGAATCGGGTGAATCCACTGAGAAACAC
ATCAGTATGACGTCAGTGTCGGGATAGCTCAGCGGTCGTAGTCTGTCGTA
GTCCTCCTGCCCGGCCGTATCCCACAAGGCCAGCTCCACCTGTTTGCCAT
CCACCTCGATGTCGGCCACATAATTCTCGAATACGGTGGGCACATAGACC
TCGGGGAACTGATCTTTGCTGAAGACAATCAGAAGGCAAGTTTTACCGCA
GGCACCGTCGCCGACAATTACCAATTTCTTGCGAATCGTCGTCATGTCGA
CTGATAACT

BS06543.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8416-PB 579 Rho1-RB 1..579 595..17 2895 100 Minus
CG8416-PC 579 Rho1-RC 1..579 595..17 2895 100 Minus
CG8416-PD 579 Rho1-RD 1..579 595..17 2895 100 Minus
CG8416-PE 579 Rho1-RE 1..579 595..17 2895 100 Minus
CG8416-PF 579 Rho1-RF 1..579 595..17 2895 100 Minus
CG8416-PG 579 Rho1-RG 1..579 595..17 2895 100 Minus
CG8416-PA 579 Rho1-RA 1..579 595..17 2895 100 Minus
CG2248-PA 579 Rac1-RA 164..195 426..395 160 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:26:06
Subject Length Description Subject Range Query Range Score Percent Strand
Rho1-RA 1288 CG8416-RA 272..853 595..14 2910 100 Minus
Rho1-RG 1977 CG8416-RG 221..802 595..14 2910 100 Minus
Rho1-RF 1971 CG8416-RF 215..796 595..14 2910 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:26:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16105859..16106054 209..14 980 100 Minus
2R 25286936 2R 16103619..16103776 595..438 790 100 Minus
2R 25286936 2R 16105030..16105184 442..288 775 100 Minus
2R 25286936 2R 16105715..16105798 291..208 420 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:26:03 has no hits.

BS06543.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:44:25 Download gff for BS06543.3prime
Subject Subject Range Query Range Percent Splice Strand
Rho1-PG 1..579 17..595 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:24:38 Download gff for BS06543.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8416-PB 1..579 17..595 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:06:56 Download gff for BS06543.3prime
Subject Subject Range Query Range Percent Splice Strand
Rho1-RF 211..796 14..600 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:50 Download gff for BS06543.3prime
Subject Subject Range Query Range Percent Splice Strand
Rho1-RF 211..796 14..600 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:50 Download gff for BS06543.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16105860..16106054 14..208 100   Minus
2R 16103615..16103774 440..600 98 -> Minus
2R 16105033..16105182 290..439 100 -> Minus
2R 16105717..16105797 209..289 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:06:56 Download gff for BS06543.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11991120..11991279 440..600 98 -> Minus
arm_2R 11992538..11992687 290..439 100 -> Minus
arm_2R 11993222..11993302 209..289 100 -> Minus
arm_2R 11993365..11993559 14..208 100   Minus

BS06543.5prime Sequence

609 bp (608 high quality bases) assembled on 2005-12-03

> BS06543.5prime
GAAGTTATCAGTCGACATGACGACGATTCGCAAGAAATTGGTAATTGTCG
GCGACGGTGCCTGCGGTAAAACTTGCCTTCTGATTGTCTTCAGCAAAGAT
CAGTTCCCCGAGGTCTATGTGCCCACCGTATTCGAGAATTATGTGGCCGA
CATCGAGGTGGATGGCAAACAGGTGGAGCTGGCCTTGTGGGATACGGCCG
GGCAGGAGGACTACGACAGACTACGACCGCTGAGCTATCCCGACACTGAC
GTCATACTGATGTGTTTCTCAGTGGATTCACCCGATTCGCTAGAAAATAT
TCCTGAAAAATGGACCCCAGAGGTCAAACACTTTTGTCCAAATGTTCCAA
TCATTTTGGTAGGAAATAAGAAAGATTTGCGAAATGATCCCAACACAATT
CGGGATCTAGCAAAAATGAAGCAGGAGCCGGTGAAGCCGCAGGAGGGTCG
CGCCATGGCCGAGAAGATTAATGCCTTTGCCTATTTGGAGTGTTCGGCTA
AGTCCAAGGAGGGTGTGCGAGATGTTTTCGAGACGGCAACTAGGGCCGCG
CTGCAAGTCAAAAAGAGGAAGAAGACCAGATGCCTTTTGCTCTAAAAGCT
TTCTAGACC

BS06543.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8416-PB 579 Rho1-RB 1..579 17..595 2895 100 Plus
CG8416-PC 579 Rho1-RC 1..579 17..595 2895 100 Plus
CG8416-PD 579 Rho1-RD 1..579 17..595 2895 100 Plus
CG8416-PE 579 Rho1-RE 1..579 17..595 2895 100 Plus
CG8416-PF 579 Rho1-RF 1..579 17..595 2895 100 Plus
CG8416-PG 579 Rho1-RG 1..579 17..595 2895 100 Plus
CG8416-PA 579 Rho1-RA 1..579 17..595 2895 100 Plus
CG2248-PA 579 Rac1-RA 164..195 186..217 160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:31:40
Subject Length Description Subject Range Query Range Score Percent Strand
Rho1-RA 1288 CG8416-RA 272..853 17..598 2910 100 Plus
Rho1-RG 1977 CG8416-RG 221..802 17..598 2910 100 Plus
Rho1-RF 1971 CG8416-RF 215..796 17..598 2910 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:31:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16105859..16106054 403..598 980 100 Plus
2R 25286936 2R 16103619..16103776 17..174 790 100 Plus
2R 25286936 2R 16105030..16105184 170..324 775 100 Plus
2R 25286936 2R 16105715..16105798 321..404 420 100 Plus
Blast to na_te.dros performed on 2015-02-13 08:31:38 has no hits.

BS06543.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:44:26 Download gff for BS06543.5prime
Subject Subject Range Query Range Percent Splice Strand
Rho1-PG 1..579 17..595 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:24:40 Download gff for BS06543.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8416-PB 1..579 17..595 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:16:47 Download gff for BS06543.5prime
Subject Subject Range Query Range Percent Splice Strand
Rho1-RF 211..796 12..598 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:24:35 Download gff for BS06543.5prime
Subject Subject Range Query Range Percent Splice Strand
Rho1-RF 211..796 12..598 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:24:35 Download gff for BS06543.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16105033..16105182 173..322 100 -> Plus
2R 16105860..16106054 404..598 100   Plus
2R 16103615..16103774 12..172 98 -> Plus
2R 16105717..16105797 323..403 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:16:47 Download gff for BS06543.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11991120..11991279 12..172 98 -> Plus
arm_2R 11992538..11992687 173..322 100 -> Plus
arm_2R 11993222..11993302 323..403 100 -> Plus
arm_2R 11993365..11993559 404..598 100   Plus

BS06543.complete Sequence

611 bp (611 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635537

> BS06543.complete
GAAGTTATCAGTCGACATGACGACGATTCGCAAGAAATTGGTAATTGTCG
GCGACGGTGCCTGCGGTAAAACTTGCCTTCTGATTGTCTTCAGCAAAGAT
CAGTTCCCCGAGGTCTATGTGCCCACCGTATTCGAGAATTATGTGGCCGA
CATCGAGGTGGATGGCAAACAGGTGGAGCTGGCCTTGTGGGATACGGCCG
GGCAGGAGGACTACGACAGACTACGACCGCTGAGCTATCCCGACACTGAC
GTCATACTGATGTGTTTCTCAGTGGATTCACCCGATTCGCTAGAAAATAT
TCCTGAAAAATGGACCCCAGAGGTCAAACACTTTTGTCCAAATGTTCCAA
TCATTTTGGTAGGAAATAAGAAAGATTTGCGAAATGATCCCAACACAATT
CGGGATCTAGCAAAAATGAAGCAGGAGCCGGTGAAGCCGCAGGAGGGTCG
CGCCATGGCCGAGAAGATTAATGCCTTTGCCTATTTGGAGTGTTCGGCTA
AGTCCAAGGAGGGTGTGCGAGATGTTTTCGAGACGGCAACTAGGGCCGCG
CTGCAAGTCAAAAAGAGGAAGAAGACCAGATGCCTTTTGCTCTAAAAGCT
TTCTAGACCAT

BS06543.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:29:40
Subject Length Description Subject Range Query Range Score Percent Strand
Rho1-RA 579 CG8416-PA 1..579 17..595 2895 100 Plus
Rho1-RG 579 CG8416-PG 1..579 17..595 2895 100 Plus
Rho1-RF 579 CG8416-PF 1..579 17..595 2895 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:29:41
Subject Length Description Subject Range Query Range Score Percent Strand
Rho1-RA 1288 CG8416-RA 272..853 17..598 2910 100 Plus
Rho1-RG 1977 CG8416-RG 221..802 17..598 2910 100 Plus
Rho1-RF 1971 CG8416-RF 215..796 17..598 2910 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:29:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16105859..16106054 403..598 980 100 Plus
2R 25286936 2R 16103619..16103776 17..174 790 100 Plus
2R 25286936 2R 16105030..16105184 170..324 775 100 Plus
2R 25286936 2R 16105715..16105798 321..404 420 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:29:39 has no hits.

BS06543.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:41 Download gff for BS06543.complete
Subject Subject Range Query Range Percent Splice Strand
Rho1-RD 1..579 17..595 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:26 Download gff for BS06543.complete
Subject Subject Range Query Range Percent Splice Strand
Rho1-RD 223..808 12..598 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:59:57 Download gff for BS06543.complete
Subject Subject Range Query Range Percent Splice Strand
Rho1-RF 215..791 17..593 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:41 Download gff for BS06543.complete
Subject Subject Range Query Range Percent Splice Strand
Rho1-RD 223..808 12..598 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:02:42 Download gff for BS06543.complete
Subject Subject Range Query Range Percent Splice Strand
Rho1-RF 215..791 17..593 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:02:42 Download gff for BS06543.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16103619..16103774 17..172 100 -> Plus
2R 16105033..16105182 173..322 100 -> Plus
2R 16105717..16105797 323..403 100 -> Plus
2R 16105860..16106049 404..593 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:59:57 Download gff for BS06543.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11991124..11991279 17..172 100 -> Plus
arm_2R 11992538..11992687 173..322 100 -> Plus
arm_2R 11993222..11993302 323..403 100 -> Plus
arm_2R 11993365..11993554 404..593 100   Plus

BS06543.pep Sequence

Translation from 16 to 594

> BS06543.pep
MTTIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDG
KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWT
PEVKHFCPNVPIILVGNKKDLRNDPNTIRDLAKMKQEPVKPQEGRAMAEK
INAFAYLECSAKSKEGVRDVFETATRAALQVKKRKKTRCLLL*

BS06543.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:03
Subject Length Description Subject Range Query Range Score Percent Strand
Rho1-PA 192 CG8416-PA 1..192 1..192 1005 100 Plus
Rho1-PG 192 CG8416-PG 1..192 1..192 1005 100 Plus
Rho1-PF 192 CG8416-PF 1..192 1..192 1005 100 Plus
Rho1-PD 192 CG8416-PD 1..192 1..192 1005 100 Plus
Rho1-PC 192 CG8416-PC 1..192 1..192 1005 100 Plus