Clone Sequence Records
BS06543.3prime Sequence
609 bp (608 high quality bases) assembled on 2005-12-03
> BS06543.3prime
ATGGTCTAGAAAGCTTTTAGAGCAAAAGGCATCTGGTCTTCTTCCTCTTT
TTGACTTGCAGCGCGGCCCTAGTTGCCGTCTCGAAAACATCTCGCACACC
CTCCTTGGACTTAGCCGAACACTCCAAATAGGCAAAGGCATTAATCTTCT
CGGCCATGGCGCGACCCTCCTGCGGCTTCACCGGCTCCTGCTTCATTTTT
GCTAGATCCCGAATTGTGTTGGGATCATTTCGCAAATCTTTCTTATTTCC
TACCAAAATGATTGGAACATTTGGACAAAAGTGTTTGACCTCTGGGGTCC
ATTTTTCAGGAATATTTTCTAGCGAATCGGGTGAATCCACTGAGAAACAC
ATCAGTATGACGTCAGTGTCGGGATAGCTCAGCGGTCGTAGTCTGTCGTA
GTCCTCCTGCCCGGCCGTATCCCACAAGGCCAGCTCCACCTGTTTGCCAT
CCACCTCGATGTCGGCCACATAATTCTCGAATACGGTGGGCACATAGACC
TCGGGGAACTGATCTTTGCTGAAGACAATCAGAAGGCAAGTTTTACCGCA
GGCACCGTCGCCGACAATTACCAATTTCTTGCGAATCGTCGTCATGTCGA
CTGATAACT
BS06543.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8416-PB | 579 | Rho1-RB | 1..579 | 595..17 | 2895 | 100 | Minus |
CG8416-PC | 579 | Rho1-RC | 1..579 | 595..17 | 2895 | 100 | Minus |
CG8416-PD | 579 | Rho1-RD | 1..579 | 595..17 | 2895 | 100 | Minus |
CG8416-PE | 579 | Rho1-RE | 1..579 | 595..17 | 2895 | 100 | Minus |
CG8416-PF | 579 | Rho1-RF | 1..579 | 595..17 | 2895 | 100 | Minus |
CG8416-PG | 579 | Rho1-RG | 1..579 | 595..17 | 2895 | 100 | Minus |
CG8416-PA | 579 | Rho1-RA | 1..579 | 595..17 | 2895 | 100 | Minus |
CG2248-PA | 579 | Rac1-RA | 164..195 | 426..395 | 160 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:26:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rho1-RA | 1288 | CG8416-RA | 272..853 | 595..14 | 2910 | 100 | Minus |
Rho1-RG | 1977 | CG8416-RG | 221..802 | 595..14 | 2910 | 100 | Minus |
Rho1-RF | 1971 | CG8416-RF | 215..796 | 595..14 | 2910 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:26:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16105859..16106054 | 209..14 | 980 | 100 | Minus |
2R | 25286936 | 2R | 16103619..16103776 | 595..438 | 790 | 100 | Minus |
2R | 25286936 | 2R | 16105030..16105184 | 442..288 | 775 | 100 | Minus |
2R | 25286936 | 2R | 16105715..16105798 | 291..208 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:26:03 has no hits.
BS06543.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:44:25 Download gff for
BS06543.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rho1-PG | 1..579 | 17..595 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:24:38 Download gff for
BS06543.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8416-PB | 1..579 | 17..595 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:06:56 Download gff for
BS06543.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rho1-RF | 211..796 | 14..600 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:50 Download gff for
BS06543.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rho1-RF | 211..796 | 14..600 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:50 Download gff for
BS06543.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16105860..16106054 | 14..208 | 100 | | Minus |
2R | 16103615..16103774 | 440..600 | 98 | -> | Minus |
2R | 16105033..16105182 | 290..439 | 100 | -> | Minus |
2R | 16105717..16105797 | 209..289 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:06:56 Download gff for
BS06543.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11991120..11991279 | 440..600 | 98 | -> | Minus |
arm_2R | 11992538..11992687 | 290..439 | 100 | -> | Minus |
arm_2R | 11993222..11993302 | 209..289 | 100 | -> | Minus |
arm_2R | 11993365..11993559 | 14..208 | 100 | | Minus |
BS06543.5prime Sequence
609 bp (608 high quality bases) assembled on 2005-12-03
> BS06543.5prime
GAAGTTATCAGTCGACATGACGACGATTCGCAAGAAATTGGTAATTGTCG
GCGACGGTGCCTGCGGTAAAACTTGCCTTCTGATTGTCTTCAGCAAAGAT
CAGTTCCCCGAGGTCTATGTGCCCACCGTATTCGAGAATTATGTGGCCGA
CATCGAGGTGGATGGCAAACAGGTGGAGCTGGCCTTGTGGGATACGGCCG
GGCAGGAGGACTACGACAGACTACGACCGCTGAGCTATCCCGACACTGAC
GTCATACTGATGTGTTTCTCAGTGGATTCACCCGATTCGCTAGAAAATAT
TCCTGAAAAATGGACCCCAGAGGTCAAACACTTTTGTCCAAATGTTCCAA
TCATTTTGGTAGGAAATAAGAAAGATTTGCGAAATGATCCCAACACAATT
CGGGATCTAGCAAAAATGAAGCAGGAGCCGGTGAAGCCGCAGGAGGGTCG
CGCCATGGCCGAGAAGATTAATGCCTTTGCCTATTTGGAGTGTTCGGCTA
AGTCCAAGGAGGGTGTGCGAGATGTTTTCGAGACGGCAACTAGGGCCGCG
CTGCAAGTCAAAAAGAGGAAGAAGACCAGATGCCTTTTGCTCTAAAAGCT
TTCTAGACC
BS06543.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8416-PB | 579 | Rho1-RB | 1..579 | 17..595 | 2895 | 100 | Plus |
CG8416-PC | 579 | Rho1-RC | 1..579 | 17..595 | 2895 | 100 | Plus |
CG8416-PD | 579 | Rho1-RD | 1..579 | 17..595 | 2895 | 100 | Plus |
CG8416-PE | 579 | Rho1-RE | 1..579 | 17..595 | 2895 | 100 | Plus |
CG8416-PF | 579 | Rho1-RF | 1..579 | 17..595 | 2895 | 100 | Plus |
CG8416-PG | 579 | Rho1-RG | 1..579 | 17..595 | 2895 | 100 | Plus |
CG8416-PA | 579 | Rho1-RA | 1..579 | 17..595 | 2895 | 100 | Plus |
CG2248-PA | 579 | Rac1-RA | 164..195 | 186..217 | 160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:31:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rho1-RA | 1288 | CG8416-RA | 272..853 | 17..598 | 2910 | 100 | Plus |
Rho1-RG | 1977 | CG8416-RG | 221..802 | 17..598 | 2910 | 100 | Plus |
Rho1-RF | 1971 | CG8416-RF | 215..796 | 17..598 | 2910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:31:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16105859..16106054 | 403..598 | 980 | 100 | Plus |
2R | 25286936 | 2R | 16103619..16103776 | 17..174 | 790 | 100 | Plus |
2R | 25286936 | 2R | 16105030..16105184 | 170..324 | 775 | 100 | Plus |
2R | 25286936 | 2R | 16105715..16105798 | 321..404 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:31:38 has no hits.
BS06543.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:44:26 Download gff for
BS06543.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rho1-PG | 1..579 | 17..595 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:24:40 Download gff for
BS06543.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8416-PB | 1..579 | 17..595 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:16:47 Download gff for
BS06543.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rho1-RF | 211..796 | 12..598 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:24:35 Download gff for
BS06543.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rho1-RF | 211..796 | 12..598 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:24:35 Download gff for
BS06543.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16105033..16105182 | 173..322 | 100 | -> | Plus |
2R | 16105860..16106054 | 404..598 | 100 | | Plus |
2R | 16103615..16103774 | 12..172 | 98 | -> | Plus |
2R | 16105717..16105797 | 323..403 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:16:47 Download gff for
BS06543.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11991120..11991279 | 12..172 | 98 | -> | Plus |
arm_2R | 11992538..11992687 | 173..322 | 100 | -> | Plus |
arm_2R | 11993222..11993302 | 323..403 | 100 | -> | Plus |
arm_2R | 11993365..11993559 | 404..598 | 100 | | Plus |
BS06543.complete Sequence
611 bp (611 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635537
> BS06543.complete
GAAGTTATCAGTCGACATGACGACGATTCGCAAGAAATTGGTAATTGTCG
GCGACGGTGCCTGCGGTAAAACTTGCCTTCTGATTGTCTTCAGCAAAGAT
CAGTTCCCCGAGGTCTATGTGCCCACCGTATTCGAGAATTATGTGGCCGA
CATCGAGGTGGATGGCAAACAGGTGGAGCTGGCCTTGTGGGATACGGCCG
GGCAGGAGGACTACGACAGACTACGACCGCTGAGCTATCCCGACACTGAC
GTCATACTGATGTGTTTCTCAGTGGATTCACCCGATTCGCTAGAAAATAT
TCCTGAAAAATGGACCCCAGAGGTCAAACACTTTTGTCCAAATGTTCCAA
TCATTTTGGTAGGAAATAAGAAAGATTTGCGAAATGATCCCAACACAATT
CGGGATCTAGCAAAAATGAAGCAGGAGCCGGTGAAGCCGCAGGAGGGTCG
CGCCATGGCCGAGAAGATTAATGCCTTTGCCTATTTGGAGTGTTCGGCTA
AGTCCAAGGAGGGTGTGCGAGATGTTTTCGAGACGGCAACTAGGGCCGCG
CTGCAAGTCAAAAAGAGGAAGAAGACCAGATGCCTTTTGCTCTAAAAGCT
TTCTAGACCAT
BS06543.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:29:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rho1-RA | 579 | CG8416-PA | 1..579 | 17..595 | 2895 | 100 | Plus |
Rho1-RG | 579 | CG8416-PG | 1..579 | 17..595 | 2895 | 100 | Plus |
Rho1-RF | 579 | CG8416-PF | 1..579 | 17..595 | 2895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:29:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rho1-RA | 1288 | CG8416-RA | 272..853 | 17..598 | 2910 | 100 | Plus |
Rho1-RG | 1977 | CG8416-RG | 221..802 | 17..598 | 2910 | 100 | Plus |
Rho1-RF | 1971 | CG8416-RF | 215..796 | 17..598 | 2910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:29:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16105859..16106054 | 403..598 | 980 | 100 | Plus |
2R | 25286936 | 2R | 16103619..16103776 | 17..174 | 790 | 100 | Plus |
2R | 25286936 | 2R | 16105030..16105184 | 170..324 | 775 | 100 | Plus |
2R | 25286936 | 2R | 16105715..16105798 | 321..404 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:29:39 has no hits.
BS06543.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:41 Download gff for
BS06543.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rho1-RD | 1..579 | 17..595 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:26 Download gff for
BS06543.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rho1-RD | 223..808 | 12..598 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:59:57 Download gff for
BS06543.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rho1-RF | 215..791 | 17..593 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:41 Download gff for
BS06543.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rho1-RD | 223..808 | 12..598 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:02:42 Download gff for
BS06543.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rho1-RF | 215..791 | 17..593 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:02:42 Download gff for
BS06543.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16103619..16103774 | 17..172 | 100 | -> | Plus |
2R | 16105033..16105182 | 173..322 | 100 | -> | Plus |
2R | 16105717..16105797 | 323..403 | 100 | -> | Plus |
2R | 16105860..16106049 | 404..593 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:59:57 Download gff for
BS06543.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11991124..11991279 | 17..172 | 100 | -> | Plus |
arm_2R | 11992538..11992687 | 173..322 | 100 | -> | Plus |
arm_2R | 11993222..11993302 | 323..403 | 100 | -> | Plus |
arm_2R | 11993365..11993554 | 404..593 | 100 | | Plus |
BS06543.pep Sequence
Translation from 16 to 594
> BS06543.pep
MTTIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDG
KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWT
PEVKHFCPNVPIILVGNKKDLRNDPNTIRDLAKMKQEPVKPQEGRAMAEK
INAFAYLECSAKSKEGVRDVFETATRAALQVKKRKKTRCLLL*
BS06543.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rho1-PA | 192 | CG8416-PA | 1..192 | 1..192 | 1005 | 100 | Plus |
Rho1-PG | 192 | CG8416-PG | 1..192 | 1..192 | 1005 | 100 | Plus |
Rho1-PF | 192 | CG8416-PF | 1..192 | 1..192 | 1005 | 100 | Plus |
Rho1-PD | 192 | CG8416-PD | 1..192 | 1..192 | 1005 | 100 | Plus |
Rho1-PC | 192 | CG8416-PC | 1..192 | 1..192 | 1005 | 100 | Plus |