Clone BS06545 Report

Search the DGRC for BS06545

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:65
Well:45
Vector:pDNR-Dual
Associated Gene/TranscriptCG5565-RA
Protein status:BS06545.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06545.3prime Sequence

753 bp (752 high quality bases) assembled on 2005-12-03

> BS06545.3prime
ATGGTCTAGAAAGCTTTTAGCCAAACTCGAATTTGGAGCAGGTGTCAAAG
GGTGGTAGACCAAAGAGCTCAGGCTTAAAGTCCGCCATCGATTTTAGAAC
CATGGTGGCGCCCTTTTTCTGCTGCTTGGAAACGTTATCAGTTGGAATAA
AGATGACTTGGGATCCCGCTGCCTTTCCGCCTATGAGGCCCACTGGAGCA
TCCTCGAATATAAGACACTTTTTGGGATCTGCGGGCGGATTGAATCGCGA
GGCGGCCAGGAGATATATATCTGGGTAGGGCTTTCCTCTTCCCGGTCCAA
GTGCCGGATCATCGCCACAGACAACGTGGTGAAAGGCCAGGAATATATCC
TTGAAGGACTCGGCCTTCACTTTGAACAGTTTCCTAAACGAACTTGTGGC
TATGCAGAAGGGTATGCGGTATTCGTGCAAGTGGAGAATCAGATCCCTGA
CCCCTGGCAGCAGAGCCACACTTCCCATGCTCTTATCAACAGCTGCCTCG
AATTCCTTTTGAAATTCCGCAGGTGACAACGGAAGTTTTAGATCCTTGAC
GATGTGTTGGGAAAATGTACCGACCGGCATTCCCATATGCTGCGTCTGAT
CGACTTTGGTGTACGTTTTGCCATATTTAGCCAACAAGTCTTGAACCGTT
TTGAGGTAGATGCCTTCGCTATCTATCAAGGTTCCATCGCAGTCAAAGAT
GACATGAGTGACGGGGCAGTAACACTTCTTGGTGGGCATGTCGACTGATA
ACT

BS06545.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5565-PA 723 CG5565-RA 1..723 739..17 3615 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:25:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG5565-RA 942 CG5565-RA 157..879 739..17 3615 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1354974..1355631 17..674 3290 100 Plus
2L 23513712 2L 1355702..1355768 673..739 335 100 Plus
Blast to na_te.dros performed on 2015-02-09 01:25:32 has no hits.

BS06545.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:44:29 Download gff for BS06545.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5565-PA 1..723 17..739 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:24:44 Download gff for BS06545.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5565-PA 1..723 17..739 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:54:28 Download gff for BS06545.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5565-RA 148..884 12..749 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:08:34 Download gff for BS06545.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5565-RA 148..884 12..749 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:08:34 Download gff for BS06545.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 1354969..1355629 12..672 99 <- Plus
2L 1355702..1355777 673..749 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:54:28 Download gff for BS06545.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1355702..1355777 673..749 94   Plus
arm_2L 1354969..1355629 12..672 99 <- Plus

BS06545.5prime Sequence

753 bp (752 high quality bases) assembled on 2005-12-03

> BS06545.5prime
GAAGTTATCAGTCGACATGCCCACCAAGAAGTGTTACTGCCCCGTCACTC
ATGTCATCTTTGACTGCGATGGAACCTTGATAGATAGCGAAGGCATCTAC
CTCAAAACGGTTCAAGACTTGTTGGCTAAATATGGCAAAACGTACACCAA
AGTCGATCAGACGCAGCATATGGGAATGCCGGTCGGTACATTTTCCCAAC
ACATCGTCAAGGATCTAAAACTTCCGTTGTCACCTGCGGAATTTCAAAAG
GAATTCGAGGCAGCTGTTGATAAGAGCATGGGAAGTGTGGCTCTGCTGCC
AGGGGTCAGGGATCTGATTCTCCACTTGCACGAATACCGCATACCCTTCT
GCATAGCCACAAGTTCGTTTAGGAAACTGTTCAAAGTGAAGGCCGAGTCC
TTCAAGGATATATTCCTGGCCTTTCACCACGTTGTCTGTGGCGATGATCC
GGCACTTGGACCGGGAAGAGGAAAGCCCTACCCAGATATATATCTCCTGG
CCGCCTCGCGATTCAATCCGCCCGCAGATCCCAAAAAGTGTCTTATATTC
GAGGATGCTCCAGTGGGCCTCATAGGCGGAAAGGCAGCGGGATCCCAAGT
CATCTTTATTCCAACTGATAACGTTTCCAAGCAGCAGAAAAAGGGCGCCA
CCATGGTTCTAAAATCGATGGCGGACTTTAAGCCTGAGCTCTTTGGTCTA
CCACCCTTTGACACCTGCTCCAAATTCGAGTTTGGCTAANAGCTTTCTAG
ACC

BS06545.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5565-PA 723 CG5565-RA 1..723 17..739 3615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:57:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG5565-RA 942 CG5565-RA 157..879 17..739 3615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1354974..1355631 739..82 3290 100 Minus
2L 23513712 2L 1355702..1355768 83..17 335 100 Minus
Blast to na_te.dros performed on 2015-02-12 12:57:15 has no hits.

BS06545.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:44:30 Download gff for BS06545.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5565-PA 1..723 17..739 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:24:45 Download gff for BS06545.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5565-PA 1..723 17..739 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:05:49 Download gff for BS06545.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5565-RA 148..884 7..744 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:30:54 Download gff for BS06545.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5565-RA 148..884 7..744 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:30:54 Download gff for BS06545.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1354969..1355629 84..744 99 <- Minus
2L 1355702..1355777 7..83 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:05:49 Download gff for BS06545.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1354969..1355629 84..744 99 <- Minus
arm_2L 1355702..1355777 7..83 94   Minus

BS06545.complete Sequence

755 bp (755 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635538

> BS06545.complete
GAAGTTATCAGTCGACATGCCCACCAAGAAGTGTTACTGCCCCGTCACTC
ATGTCATCTTTGACTGCGATGGAACCTTGATAGATAGCGAAGGCATCTAC
CTCAAAACGGTTCAAGACTTGTTGGCTAAATATGGCAAAACGTACACCAA
AGTCGATCAGACGCAGCATATGGGAATGCCGGTCGGTACATTTTCCCAAC
ACATCGTCAAGGATCTAAAACTTCCGTTGTCACCTGCGGAATTTCAAAAG
GAATTCGAGGCAGCTGTTGATAAGAGCATGGGAAGTGTGGCTCTGCTGCC
AGGGGTCAGGGATCTGATTCTCCACTTGCACGAATACCGCATACCCTTCT
GCATAGCCACAAGTTCGTTTAGGAAACTGTTCAAAGTGAAGGCCGAGTCC
TTCAAGGATATATTCCTGGCCTTTCACCACGTTGTCTGTGGCGATGATCC
GGCACTTGGACCGGGAAGAGGAAAGCCCTACCCAGATATATATCTCCTGG
CCGCCTCGCGATTCAATCCGCCCGCAGATCCCAAAAAGTGTCTTATATTC
GAGGATGCTCCAGTGGGCCTCATAGGCGGAAAGGCAGCGGGATCCCAAGT
CATCTTTATTCCAACTGATAACGTTTCCAAGCAGCAGAAAAAGGGCGCCA
CCATGGTTCTAAAATCGATGGCGGACTTTAAGCCTGAGCTCTTTGGTCTA
CCACCCTTTGACACCTGCTCCAAATTCGAGTTTGGCTAAAAGCTTTCTAG
ACCAT

BS06545.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:39:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5565-RA 723 CG5565-PA 1..723 17..739 3615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:39:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG5565-RA 942 CG5565-RA 157..879 17..739 3615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1354974..1355631 739..82 3290 100 Minus
2L 23513712 2L 1355702..1355768 83..17 335 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:39:36 has no hits.

BS06545.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:26 Download gff for BS06545.complete
Subject Subject Range Query Range Percent Splice Strand
CG5565-RA 1..723 17..739 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:07 Download gff for BS06545.complete
Subject Subject Range Query Range Percent Splice Strand
CG5565-RA 148..884 7..744 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:29:00 Download gff for BS06545.complete
Subject Subject Range Query Range Percent Splice Strand
CG5565-RA 157..877 17..737 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:27 Download gff for BS06545.complete
Subject Subject Range Query Range Percent Splice Strand
CG5565-RA 148..884 7..744 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:49 Download gff for BS06545.complete
Subject Subject Range Query Range Percent Splice Strand
CG5565-RA 157..877 17..737 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:49 Download gff for BS06545.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1354976..1355629 84..737 100 <- Minus
2L 1355702..1355768 17..83 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:29:00 Download gff for BS06545.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1354976..1355629 84..737 100 <- Minus
arm_2L 1355702..1355768 17..83 100   Minus

BS06545.pep Sequence

Translation from 16 to 738

> BS06545.pep
MPTKKCYCPVTHVIFDCDGTLIDSEGIYLKTVQDLLAKYGKTYTKVDQTQ
HMGMPVGTFSQHIVKDLKLPLSPAEFQKEFEAAVDKSMGSVALLPGVRDL
ILHLHEYRIPFCIATSSFRKLFKVKAESFKDIFLAFHHVVCGDDPALGPG
RGKPYPDIYLLAASRFNPPADPKKCLIFEDAPVGLIGGKAAGSQVIFIPT
DNVSKQQKKGATMVLKSMADFKPELFGLPPFDTCSKFEFG*

BS06545.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG5565-PA 240 CG5565-PA 1..240 1..240 1275 100 Plus
Gs1l-PA 231 CG15441-PA 9..229 10..231 461 40.5 Plus
Gs1l-PB 231 CG15441-PB 9..229 10..231 436 37.8 Plus
CG31924-PB 236 CG31924-PB 8..235 3..230 424 41.3 Plus
CG5561-PA 305 CG5561-PA 21..245 5..231 253 28.5 Plus