Clone Sequence Records
BS06545.3prime Sequence
753 bp (752 high quality bases) assembled on 2005-12-03
> BS06545.3prime
ATGGTCTAGAAAGCTTTTAGCCAAACTCGAATTTGGAGCAGGTGTCAAAG
GGTGGTAGACCAAAGAGCTCAGGCTTAAAGTCCGCCATCGATTTTAGAAC
CATGGTGGCGCCCTTTTTCTGCTGCTTGGAAACGTTATCAGTTGGAATAA
AGATGACTTGGGATCCCGCTGCCTTTCCGCCTATGAGGCCCACTGGAGCA
TCCTCGAATATAAGACACTTTTTGGGATCTGCGGGCGGATTGAATCGCGA
GGCGGCCAGGAGATATATATCTGGGTAGGGCTTTCCTCTTCCCGGTCCAA
GTGCCGGATCATCGCCACAGACAACGTGGTGAAAGGCCAGGAATATATCC
TTGAAGGACTCGGCCTTCACTTTGAACAGTTTCCTAAACGAACTTGTGGC
TATGCAGAAGGGTATGCGGTATTCGTGCAAGTGGAGAATCAGATCCCTGA
CCCCTGGCAGCAGAGCCACACTTCCCATGCTCTTATCAACAGCTGCCTCG
AATTCCTTTTGAAATTCCGCAGGTGACAACGGAAGTTTTAGATCCTTGAC
GATGTGTTGGGAAAATGTACCGACCGGCATTCCCATATGCTGCGTCTGAT
CGACTTTGGTGTACGTTTTGCCATATTTAGCCAACAAGTCTTGAACCGTT
TTGAGGTAGATGCCTTCGCTATCTATCAAGGTTCCATCGCAGTCAAAGAT
GACATGAGTGACGGGGCAGTAACACTTCTTGGTGGGCATGTCGACTGATA
ACT
BS06545.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5565-PA | 723 | CG5565-RA | 1..723 | 739..17 | 3615 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:25:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5565-RA | 942 | CG5565-RA | 157..879 | 739..17 | 3615 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:25:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1354974..1355631 | 17..674 | 3290 | 100 | Plus |
2L | 23513712 | 2L | 1355702..1355768 | 673..739 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 01:25:32 has no hits.
BS06545.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:44:29 Download gff for
BS06545.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5565-PA | 1..723 | 17..739 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:24:44 Download gff for
BS06545.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5565-PA | 1..723 | 17..739 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:54:28 Download gff for
BS06545.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5565-RA | 148..884 | 12..749 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:08:34 Download gff for
BS06545.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5565-RA | 148..884 | 12..749 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:08:34 Download gff for
BS06545.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1354969..1355629 | 12..672 | 99 | <- | Plus |
2L | 1355702..1355777 | 673..749 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:54:28 Download gff for
BS06545.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1355702..1355777 | 673..749 | 94 | | Plus |
arm_2L | 1354969..1355629 | 12..672 | 99 | <- | Plus |
BS06545.5prime Sequence
753 bp (752 high quality bases) assembled on 2005-12-03
> BS06545.5prime
GAAGTTATCAGTCGACATGCCCACCAAGAAGTGTTACTGCCCCGTCACTC
ATGTCATCTTTGACTGCGATGGAACCTTGATAGATAGCGAAGGCATCTAC
CTCAAAACGGTTCAAGACTTGTTGGCTAAATATGGCAAAACGTACACCAA
AGTCGATCAGACGCAGCATATGGGAATGCCGGTCGGTACATTTTCCCAAC
ACATCGTCAAGGATCTAAAACTTCCGTTGTCACCTGCGGAATTTCAAAAG
GAATTCGAGGCAGCTGTTGATAAGAGCATGGGAAGTGTGGCTCTGCTGCC
AGGGGTCAGGGATCTGATTCTCCACTTGCACGAATACCGCATACCCTTCT
GCATAGCCACAAGTTCGTTTAGGAAACTGTTCAAAGTGAAGGCCGAGTCC
TTCAAGGATATATTCCTGGCCTTTCACCACGTTGTCTGTGGCGATGATCC
GGCACTTGGACCGGGAAGAGGAAAGCCCTACCCAGATATATATCTCCTGG
CCGCCTCGCGATTCAATCCGCCCGCAGATCCCAAAAAGTGTCTTATATTC
GAGGATGCTCCAGTGGGCCTCATAGGCGGAAAGGCAGCGGGATCCCAAGT
CATCTTTATTCCAACTGATAACGTTTCCAAGCAGCAGAAAAAGGGCGCCA
CCATGGTTCTAAAATCGATGGCGGACTTTAAGCCTGAGCTCTTTGGTCTA
CCACCCTTTGACACCTGCTCCAAATTCGAGTTTGGCTAANAGCTTTCTAG
ACC
BS06545.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5565-PA | 723 | CG5565-RA | 1..723 | 17..739 | 3615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:57:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5565-RA | 942 | CG5565-RA | 157..879 | 17..739 | 3615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:57:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1354974..1355631 | 739..82 | 3290 | 100 | Minus |
2L | 23513712 | 2L | 1355702..1355768 | 83..17 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:57:15 has no hits.
BS06545.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:44:30 Download gff for
BS06545.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5565-PA | 1..723 | 17..739 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:24:45 Download gff for
BS06545.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5565-PA | 1..723 | 17..739 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:05:49 Download gff for
BS06545.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5565-RA | 148..884 | 7..744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:30:54 Download gff for
BS06545.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5565-RA | 148..884 | 7..744 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:30:54 Download gff for
BS06545.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1354969..1355629 | 84..744 | 99 | <- | Minus |
2L | 1355702..1355777 | 7..83 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:05:49 Download gff for
BS06545.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1354969..1355629 | 84..744 | 99 | <- | Minus |
arm_2L | 1355702..1355777 | 7..83 | 94 | | Minus |
BS06545.complete Sequence
755 bp (755 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635538
> BS06545.complete
GAAGTTATCAGTCGACATGCCCACCAAGAAGTGTTACTGCCCCGTCACTC
ATGTCATCTTTGACTGCGATGGAACCTTGATAGATAGCGAAGGCATCTAC
CTCAAAACGGTTCAAGACTTGTTGGCTAAATATGGCAAAACGTACACCAA
AGTCGATCAGACGCAGCATATGGGAATGCCGGTCGGTACATTTTCCCAAC
ACATCGTCAAGGATCTAAAACTTCCGTTGTCACCTGCGGAATTTCAAAAG
GAATTCGAGGCAGCTGTTGATAAGAGCATGGGAAGTGTGGCTCTGCTGCC
AGGGGTCAGGGATCTGATTCTCCACTTGCACGAATACCGCATACCCTTCT
GCATAGCCACAAGTTCGTTTAGGAAACTGTTCAAAGTGAAGGCCGAGTCC
TTCAAGGATATATTCCTGGCCTTTCACCACGTTGTCTGTGGCGATGATCC
GGCACTTGGACCGGGAAGAGGAAAGCCCTACCCAGATATATATCTCCTGG
CCGCCTCGCGATTCAATCCGCCCGCAGATCCCAAAAAGTGTCTTATATTC
GAGGATGCTCCAGTGGGCCTCATAGGCGGAAAGGCAGCGGGATCCCAAGT
CATCTTTATTCCAACTGATAACGTTTCCAAGCAGCAGAAAAAGGGCGCCA
CCATGGTTCTAAAATCGATGGCGGACTTTAAGCCTGAGCTCTTTGGTCTA
CCACCCTTTGACACCTGCTCCAAATTCGAGTTTGGCTAAAAGCTTTCTAG
ACCAT
BS06545.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:39:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5565-RA | 723 | CG5565-PA | 1..723 | 17..739 | 3615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:39:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5565-RA | 942 | CG5565-RA | 157..879 | 17..739 | 3615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:39:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1354974..1355631 | 739..82 | 3290 | 100 | Minus |
2L | 23513712 | 2L | 1355702..1355768 | 83..17 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:39:36 has no hits.
BS06545.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:26 Download gff for
BS06545.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5565-RA | 1..723 | 17..739 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:07 Download gff for
BS06545.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5565-RA | 148..884 | 7..744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:29:00 Download gff for
BS06545.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5565-RA | 157..877 | 17..737 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:27 Download gff for
BS06545.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5565-RA | 148..884 | 7..744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:49 Download gff for
BS06545.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5565-RA | 157..877 | 17..737 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:49 Download gff for
BS06545.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1354976..1355629 | 84..737 | 100 | <- | Minus |
2L | 1355702..1355768 | 17..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:29:00 Download gff for
BS06545.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1354976..1355629 | 84..737 | 100 | <- | Minus |
arm_2L | 1355702..1355768 | 17..83 | 100 | | Minus |
BS06545.pep Sequence
Translation from 16 to 738
> BS06545.pep
MPTKKCYCPVTHVIFDCDGTLIDSEGIYLKTVQDLLAKYGKTYTKVDQTQ
HMGMPVGTFSQHIVKDLKLPLSPAEFQKEFEAAVDKSMGSVALLPGVRDL
ILHLHEYRIPFCIATSSFRKLFKVKAESFKDIFLAFHHVVCGDDPALGPG
RGKPYPDIYLLAASRFNPPADPKKCLIFEDAPVGLIGGKAAGSQVIFIPT
DNVSKQQKKGATMVLKSMADFKPELFGLPPFDTCSKFEFG*
BS06545.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5565-PA | 240 | CG5565-PA | 1..240 | 1..240 | 1275 | 100 | Plus |
Gs1l-PA | 231 | CG15441-PA | 9..229 | 10..231 | 461 | 40.5 | Plus |
Gs1l-PB | 231 | CG15441-PB | 9..229 | 10..231 | 436 | 37.8 | Plus |
CG31924-PB | 236 | CG31924-PB | 8..235 | 3..230 | 424 | 41.3 | Plus |
CG5561-PA | 305 | CG5561-PA | 21..245 | 5..231 | 253 | 28.5 | Plus |