Clone Sequence Records
BS06546.3prime Sequence
900 bp (835 high quality bases) assembled on 2005-12-03
> BS06546.3prime
ATGGTCTAGAAAGCTTTTAAATGTTTGGCATTATGGGTGCGGGCACATGG
GTGTTCTGCTGCACCACGGTTGCGATCCAATCGGCGTAGCTGTACACATC
CGTATAGACACCGATTCCGGAGCACTCCCTGCTGCCGTAGCTGACGACTC
CGAATTGCACGGGACGCATTTTGTCCATGTGGCGCACAGTCTGGAAGAGC
GGACCGCCGGAGTCTCCGTTGCACGTATCGGATCCAAGGCGTCCGGCGCA
AATTTGGTTCTGCTGCACTAACCTGCCAAGAGCTTGCATGCACTGGGATG
AATTATAGCGCTGGAGCTGGGTGATCTGCAGAACACCTCGTGTCCTGTGT
GTTCTAGTCTCGCCCCAACCGGTGGCAACAAACCATTCTATGCTATCGAC
TAATTCCCTCTTGGAGGTACCCAAAATGATGCAAATGGGCGAGATGTGAG
CTTTGAAAGTCACAAATTTGGCCAAGCGAAGGAGCGCGATGTCGTTCAGG
TTTTTGATCTCAGAGAACTTTCCATGCCGGAAGGCCATGTCCACATCGTG
CTCCTCAGCCCTTGGGATGCAGATCTTGCTGTTGCAGTCCTCTGTCGCAG
TATCATCGTACTCACCGAGTCGCACCTTTACCGCACTTCCTTCGTTAACA
CAATGCGCTGCTGTTAGGACAAACCGCTGGGTAATGAGAGTTCCTCCGCA
GATTAATTTGACGGAGGAATGGATGTAGGCCATCCACGGATTTGAGTTTA
TGATCGCATCTCTGCCACCAATTATTTTAAAAGCGATAGTATTTGCAGTT
AGCCCGCACCTCGGTTCCAAGTACTCTCCATTGCCCAGAGAACAGAGGAC
TCCCATTGCCAGAGCTGTGATCGCTGCAATAGCGCCCCACATGTCGACTG
BS06546.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30090-PA | 876 | CG30090-RA | 1..876 | 892..17 | 4355 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:02:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30090-RA | 999 | CG30090-RA | 23..898 | 892..17 | 4365 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:02:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15690478..15690913 | 452..17 | 2180 | 100 | Minus |
2R | 25286936 | 2R | 15689848..15690065 | 892..675 | 1075 | 99.5 | Minus |
2R | 25286936 | 2R | 15690254..15690432 | 629..451 | 895 | 100 | Minus |
2R | 25286936 | 2R | 15690121..15690166 | 675..630 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 13:02:30 has no hits.
BS06546.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:44:31 Download gff for
BS06546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30090-PA | 1..876 | 17..892 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:24:46 Download gff for
BS06546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30090-PA | 1..876 | 17..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:56:19 Download gff for
BS06546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30090-RA | 11..902 | 11..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:46:27 Download gff for
BS06546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30090-RA | 11..902 | 11..900 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:46:27 Download gff for
BS06546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15689836..15690064 | 676..900 | 97 | -> | Minus |
2R | 15690121..15690166 | 630..675 | 100 | -> | Minus |
2R | 15690254..15690432 | 451..629 | 100 | -> | Minus |
2R | 15690480..15690917 | 11..450 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:56:19 Download gff for
BS06546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11577341..11577569 | 676..900 | 97 | -> | Minus |
arm_2R | 11577626..11577671 | 630..675 | 100 | -> | Minus |
arm_2R | 11577759..11577937 | 451..629 | 100 | -> | Minus |
arm_2R | 11577985..11578422 | 11..450 | 99 | | Minus |
BS06546.5prime Sequence
905 bp (826 high quality bases) assembled on 2005-12-03
> BS06546.5prime
GAAGTTATCAGTCGACATGTGGGGCGCTATTGCAGCGATCACAGCTCTGG
CAATTGGAGTCCTCTGTTCTCTGGGCAATGGAGAGTACTTGGAACCGAGG
TGCGGGCTAACTGCAAATACTATCGCTTTTAAAATAATTGGTGGCAGAGA
TGCGATCATAAACTCAAATCCGTGGATGGCCTACATCCATTCCTCCGTCA
AATTAATCTGCGGAGGAACTCTCATTACCCAGCGGTTTGTCCTAACAGCA
GCGCATTGTGTTAACGAAGGAAGTGCGGTAAAGGTGCGACTCGGTGAGTA
CGATGATACTGCGACAGAGGACTGCAACAGCAAGATCTGCATCCCAAGGG
CTGAGGAGCACGATGTGGACATGGCCTTCCGGCATGGAAAGTTCTCTGAG
ATCAAAAACCTGAACGACATCGCGCTCCTTCGCTTGGCCAAATTTGTGAC
TTTCAAAGCTCACATCTCGCCCATTTGCATCATTTTGGGTACCTCCAAGA
GGGAATTAGTCGATAGCATAGAATGGTTTGTTGCCACCGGTTGGGGCGAG
ACTAGAACACACAGGACACGAGGTGTTCTGCAGATCACCCAGCTCCAGCG
CTATAATTCATCCCAGTGCATGCAAGCTCTTGGCAGGTTAGTGCAGCAGA
ACCAAATTTGCGCCGGACGCCTTGGATCCGATACGTGCAACGGAGACTCC
GGCGGTCCGCTCTTCCAGACTGTGCGCCACATGGACAAAATGCGTCCCGT
GCAATTCGGAGTCGTCAGCTACGGCAGCAGGGAGTGCTCCGGAATCGGTG
TCTATACGGATGTGTACAGCTACGCCGATTGGATCGCAACCGTGGTGCAG
CAGAACACCCATGTGCCCGCACCCATAATGCCAAACATTTAAAGCTTTCT
AGACC
BS06546.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30090-PA | 876 | CG30090-RA | 1..876 | 17..892 | 4380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:49:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30090-RA | 999 | CG30090-RA | 23..898 | 17..892 | 4380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:49:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15690478..15690913 | 457..892 | 2180 | 100 | Plus |
2R | 25286936 | 2R | 15689848..15690065 | 17..234 | 1090 | 100 | Plus |
2R | 25286936 | 2R | 15690254..15690432 | 280..458 | 895 | 100 | Plus |
2R | 25286936 | 2R | 15690121..15690166 | 234..279 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:49:48 has no hits.
BS06546.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:44:32 Download gff for
BS06546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30090-PA | 1..876 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:24:48 Download gff for
BS06546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30090-PA | 1..876 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:03:51 Download gff for
BS06546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30090-RA | 14..902 | 7..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:20:59 Download gff for
BS06546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30090-RA | 14..902 | 7..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:20:59 Download gff for
BS06546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15689839..15690064 | 7..233 | 98 | -> | Plus |
2R | 15690121..15690166 | 234..279 | 100 | -> | Plus |
2R | 15690254..15690432 | 280..458 | 100 | -> | Plus |
2R | 15690480..15690917 | 459..897 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:03:51 Download gff for
BS06546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11577344..11577569 | 7..233 | 98 | -> | Plus |
arm_2R | 11577626..11577671 | 234..279 | 100 | -> | Plus |
arm_2R | 11577759..11577937 | 280..458 | 100 | -> | Plus |
arm_2R | 11577985..11578422 | 459..897 | 99 | | Plus |
BS06546.complete Sequence
908 bp (908 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635539
> BS06546.complete
GAAGTTATCAGTCGACATGTGGGGCGCTATTGCAGCGATCACAGCTCTGG
CAATTGGAGTCCTCTGTTCTCTGGGCAATGGAGAGTACTTGGAACCGAGG
TGCGGGCTAACTGCAAATACTATCGCTTTTAAAATAATTGGTGGCAGAGA
TGCGATCATAAACTCAAATCCGTGGATGGCCTACATCCATTCCTCCGTCA
AATTAATCTGCGGAGGAACTCTCATTACCCAGCGGTTTGTCCTAACAGCA
GCGCATTGTGTTAACGAAGGAAGTGCGGTAAAGGTGCGACTCGGTGAGTA
CGATGATACTGCGACAGAGGACTGCAACAGCAAGATCTGCATCCCAAGGG
CTGAGGAGCACGATGTGGACATGGCCTTCCGGCATGGAAAGTTCTCTGAG
ATCAAAAACCTGAACGACATCGCGCTCCTTCGCTTGGCCAAATTTGTGAC
TTTCAAAGCTCACATCTCGCCCATTTGCATCATTTTGGGTACCTCCAAGA
GGGAATTAGTCGATAGCATAGAATGGTTTGTTGCCACCGGTTGGGGCGAG
ACTAGAACACACAGGACACGAGGTGTTCTGCAGATCACCCAGCTCCAGCG
CTATAATTCATCCCAGTGCATGCAAGCTCTTGGCAGGTTAGTGCAGCAGA
ACCAAATTTGCGCCGGACGCCTTGGATCCGATACGTGCAACGGAGACTCC
GGCGGTCCGCTCTTCCAGACTGTGCGCCACATGGACAAAATGCGTCCCGT
GCAATTCGGAGTCGTCAGCTACGGCAGCAGGGAGTGCTCCGGAATCGGTG
TCTATACGGATGTGTACAGCTACGCCGATTGGATCGCAACCGTGGTGCAG
CAGAACACCCATGTGCCCGCACCCATAATGCCAAACATTTAAAAGCTTTC
TAGACCAT
BS06546.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:05:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30090-RA | 876 | CG30090-PA | 1..876 | 17..892 | 4380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:05:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30090-RA | 999 | CG30090-RA | 23..898 | 17..892 | 4380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:05:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15690478..15690913 | 457..892 | 2180 | 100 | Plus |
2R | 25286936 | 2R | 15689848..15690065 | 17..234 | 1090 | 100 | Plus |
2R | 25286936 | 2R | 15690254..15690432 | 280..458 | 895 | 100 | Plus |
2R | 25286936 | 2R | 15690121..15690166 | 234..279 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:05:01 has no hits.
BS06546.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:08 Download gff for
BS06546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30090-RA | 1..876 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:03 Download gff for
BS06546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30090-RA | 2..885 | 15..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:46:04 Download gff for
BS06546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30090-RA | 23..896 | 17..890 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:08 Download gff for
BS06546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30090-RA | 2..885 | 15..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:50:40 Download gff for
BS06546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30090-RA | 23..896 | 17..890 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:50:40 Download gff for
BS06546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15690254..15690432 | 280..458 | 100 | -> | Plus |
2R | 15689848..15690064 | 17..233 | 100 | -> | Plus |
2R | 15690121..15690166 | 234..279 | 100 | -> | Plus |
2R | 15690480..15690911 | 459..890 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:46:04 Download gff for
BS06546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11577353..11577569 | 17..233 | 100 | -> | Plus |
arm_2R | 11577626..11577671 | 234..279 | 100 | -> | Plus |
arm_2R | 11577759..11577937 | 280..458 | 100 | -> | Plus |
arm_2R | 11577985..11578416 | 459..890 | 100 | | Plus |
BS06546.pep Sequence
Translation from 16 to 891
> BS06546.pep
MWGAIAAITALAIGVLCSLGNGEYLEPRCGLTANTIAFKIIGGRDAIINS
NPWMAYIHSSVKLICGGTLITQRFVLTAAHCVNEGSAVKVRLGEYDDTAT
EDCNSKICIPRAEEHDVDMAFRHGKFSEIKNLNDIALLRLAKFVTFKAHI
SPICIILGTSKRELVDSIEWFVATGWGETRTHRTRGVLQITQLQRYNSSQ
CMQALGRLVQQNQICAGRLGSDTCNGDSGGPLFQTVRHMDKMRPVQFGVV
SYGSRECSGIGVYTDVYSYADWIATVVQQNTHVPAPIMPNI*
BS06546.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30090-PA | 291 | CG30090-PA | 1..291 | 1..291 | 1538 | 100 | Plus |
CG30286-PB | 277 | CG30286-PB | 20..277 | 23..283 | 547 | 39.5 | Plus |
CG30088-PB | 281 | CG30088-PB | 28..279 | 24..280 | 546 | 42.6 | Plus |
CG18636-PA | 349 | CG18636-PA | 24..281 | 20..276 | 544 | 41.3 | Plus |
CG30082-PB | 280 | CR30082-PB | 22..276 | 23..278 | 528 | 43 | Plus |