Clone Sequence Records
BS06547.3prime Sequence
878 bp (873 high quality bases) assembled on 2005-12-03
> BS06547.3prime
ATGGTCTAGAAAGCTTCTAGCACATACGTCCAGCGCCGACTTTATCGCCC
TTATTGGACTCCAATTCCTGGAGGACCGATGAAAGAAGACTTATTTCGCG
CATGATGAAGCTCATGATTTTGTCGATCTCATAGCTGTGGTAGCTGGGAA
CAATGTCTCGACGTTTGCAGAGCATGCGGTACAGGATTTGAATGCCATCA
AACATGCGCTCCTTGTCCAGGTTGTAGAGCGACGTGGTGTCCTTGCAGGC
ACTTAGTATCTTTTCCCACTTGAGGCAAGTGGCCCGCGAGCTGACATAGG
AACGATCCAAACGGGCCAGATCGTTTTTGAGGCCCAAAACGGTCAAGGCC
GCCTCGCTGGTGATCTGAACCATTCGCAGGCGCATCTCCTCGATCTCGTT
GAGTTTCTGGCTCTCCAGCTTATTGATCTCCACCTGGGCCAACATTAGAG
CGTCACATCGATCGATGCAGTCTTTCGTTGAGATGAAGATGTCCGACACC
TCGACTACCTCCTCCAGGACCCTCTCGTATGGCTGAAACTGAGCCACCGT
GGCCTTGAGCGCATTGCGAAAGGTGCTCAGTTCGGCAATGGAGGTCTTGA
ACTCGTCTATCTCCTTGGTGACCTCCGCGTGGAGAACGGTCTCCTCGCGA
ATCGACTTATCCGCACTGCGCTTTTTGTCCGCACAATCCTTGATGAATCC
ATTCACCTCGACGAAGCGTTTGCGCAGGCGCTCCTGAATCTTGTACATCT
TGCGAATGCGCTGCACATTTAATGCGGCTTGCCGCTTGGCATCTTTGAGT
AGCTGGATCTGAACCTGCTTCATGGCGTCGTACTCCCGGAGATTGGCTAT
GTACAGCATCTCGATGTTATCCCCGGGC
BS06547.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10750-PA | 996 | CG10750-RA | 137..996 | 876..17 | 4300 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:25:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10750-RA | 1175 | CG10750-RA | 255..1114 | 876..17 | 4300 | 100 | Minus |
CG10750-RB | 1175 | CG10750-RB | 255..1114 | 876..17 | 4270 | 99.8 | Minus |
CG17564-RB | 1305 | CG17564-RB | 471..905 | 748..314 | 420 | 74 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:25:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19300571..19301002 | 876..445 | 2160 | 100 | Minus |
2L | 23513712 | 2L | 19301058..19301345 | 444..157 | 1440 | 100 | Minus |
2L | 23513712 | 2L | 19301398..19301539 | 158..17 | 710 | 100 | Minus |
2L | 23513712 | 2L | 19298996..19299291 | 453..748 | 220 | 71.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:25:28 has no hits.
BS06547.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:44:33 Download gff for
BS06547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10750-PA | 135..996 | 17..878 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:24:49 Download gff for
BS06547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10750-PA | 135..996 | 17..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:04:43 Download gff for
BS06547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10750-RA | 253..1114 | 17..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:23 Download gff for
BS06547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10750-RA | 253..1114 | 17..878 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:23 Download gff for
BS06547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19301400..19301539 | 17..156 | 100 | | Minus |
2L | 19300569..19301002 | 445..878 | 99 | -> | Minus |
2L | 19301058..19301345 | 157..444 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:04:43 Download gff for
BS06547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19300569..19301002 | 445..878 | 99 | -> | Minus |
arm_2L | 19301058..19301345 | 157..444 | 100 | -> | Minus |
arm_2L | 19301400..19301539 | 17..156 | 100 | | Minus |
BS06547.5prime Sequence
970 bp (809 high quality bases) assembled on 2005-12-03
> BS06547.5prime
GAAGTTATCAGTCGACATGCCGCGACGTAAGCCCACCATTAAGACCGATG
TGATCGGGGATCTGGACCTCAGTCCAGAGGTCGCCATCGATGACTATCGC
GTCTCTCGCCAGCAGGACCAATTCTTCGTGAAACCGCCCAATTGGGATTC
GGCCGGGGATAACATCGAGATGCTGTACATAGCCAATCTCCGGGAGTACG
ACGCCATGAAGCAGGTTCAGATCCAGCTACTCAAAGATGCCAAGCGGCAA
GCCGCATTAAATGTGCAGCGCATTCGCAAGATGTACAAGATTCAGGAGCG
CCTGCGCAAACGCTTCGTCGAGGTGAATGGATTCATCAAGGATTGTGCGG
ACAAAAAGCGCAGTGCGGATAAGTCGATTCGCGAGGAGACCGTTCTCCAC
GCGGAGGTCACCAAGGAGATAGACGAGTTCAAGACCTCCATTGCCGAACT
GAGCACCTTTCGCAATGCGCTCAAGGCCACGGTGGCTCAGTTTCAGCCAT
ACGAGAGGGTCCTGGAGGAGGTAGTCGAGGTGTCGGACATCTTCATCTCA
ACGAAAGACTGCATCGATCGATGTGACGCTCTAATGTTGGCCCAGGTGGA
GATCAATAAGCTGGAGAGCCAGAAACTCAACGAGATCGAGGAGATGCGCC
TGCGAATGGTTCAGATCACCAGCGAGGCGGCCTTGACCGTTTTGGGCCTC
AAAAACGATCTGGCCCGTTTGGATCGTTCCTATGTCAGCTCGCGGGCCAC
TTGCCTCAAGTGGGAAAAGATACTAAGTGCCTGCAAGGACACCACGTCGC
TCTACAACCTGGACAAGGAGCGCATGTTTGATGGCATTCAAATCCTGTAC
CGCATGCTCTGCAAACGTCGAGACATTGTTCCCAGCTACCACAGCTATGA
GATCGACAAAATCATGAGCTTCATCATGCGCGAAATAAGTCTTCTTTCAT
CGGTCCTCCGGAAATGGGAG
BS06547.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10750-PA | 996 | CG10750-RA | 1..943 | 17..959 | 4715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:43:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10750-RA | 1175 | CG10750-RA | 119..1072 | 17..970 | 4725 | 99.7 | Plus |
CG10750-RB | 1175 | CG10750-RB | 119..1072 | 17..970 | 4695 | 99.5 | Plus |
CG17564-RB | 1305 | CG17564-RB | 471..905 | 281..715 | 420 | 74 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:43:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19300548..19301002 | 130..584 | 2275 | 100 | Plus |
2L | 23513712 | 2L | 19301058..19301345 | 585..872 | 1440 | 100 | Plus |
2L | 23513712 | 2L | 19300373..19300486 | 17..130 | 570 | 100 | Plus |
2L | 23513712 | 2L | 19301398..19301497 | 871..970 | 455 | 97 | Plus |
2L | 23513712 | 2L | 19298996..19299291 | 576..281 | 220 | 71.6 | Minus |
Blast to na_te.dros performed on 2015-02-09 22:43:54 has no hits.
BS06547.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:44:34 Download gff for
BS06547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10750-PA | 1..954 | 17..970 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:24:50 Download gff for
BS06547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10750-PA | 1..954 | 17..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:27:38 Download gff for
BS06547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10750-RA | 119..1072 | 17..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:48:07 Download gff for
BS06547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10750-RA | 119..1072 | 17..970 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:48:07 Download gff for
BS06547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19300373..19300485 | 17..129 | 100 | -> | Plus |
2L | 19300548..19301002 | 130..584 | 100 | -> | Plus |
2L | 19301058..19301345 | 585..872 | 100 | -> | Plus |
2L | 19301400..19301497 | 873..970 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:27:38 Download gff for
BS06547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19300373..19300485 | 17..129 | 100 | -> | Plus |
arm_2L | 19300548..19301002 | 130..584 | 100 | -> | Plus |
arm_2L | 19301058..19301345 | 585..872 | 100 | -> | Plus |
arm_2L | 19301400..19301497 | 873..970 | 96 | | Plus |
BS06547.complete Sequence
1028 bp (1028 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635540
> BS06547.complete
GAAGTTATCAGTCGACATGCCGCGACGTAAGCCCACCATTAAGACCGATG
TGATCGGGGATCTGGACCTCAGTCCAGAGGTCGCCATCGATGACTATCGC
GTCTCTCGCCAGCAGGACCAATTCTTCGTGAAACCGCCCAATTGGGATTC
GGCCGGGGATAACATCGAGATGCTGTACATAGCCAATCTCCGGGAGTACG
ACGCCATGAAGCAGGTTCAGATCCAGCTACTCAAAGATGCCAAGCGGCAA
GCCGCATTAAATGTGCAGCGCATTCGCAAGATGTACAAGATTCAGGAGCG
CCTGCGCAAACGCTTCGTCGAGGTGAATGGATTCATCAAGGATTGTGCGG
ACAAAAAGCGCAGTGCGGATAAGTCGATTCGCGAGGAGACCGTTCTCCAC
GCGGAGGTCACCAAGGAGATAGACGAGTTCAAGACCTCCATTGCCGAACT
GAGCACCTTTCGCAATGCGCTCAAGGCCACGGTGGCTCAGTTTCAGCCAT
ACGAGAGGGTCCTGGAGGAGGTAGTCGAGGTGTCGGACATCTTCATCTCA
ACGAAAGACTGCATCGATCGATGTGACGCTCTAATGTTGGCCCAGGTGGA
GATCAATAAGCTGGAGAGCCAGAAACTCAACGAGATCGAGGAGATGCGCC
TGCGAATGGTTCAGATCACCAGCGAGGCGGCCTTGACCGTTTTGGGCCTC
AAAAACGATCTGGCCCGTTTGGATCGTTCCTATGTCAGCTCGCGGGCCAC
TTGCCTCAAGTGGGAAAAGATACTAAGTGCCTGCAAGGACACCACGTCGC
TCTACAACCTGGACAAGGAGCGCATGTTTGATGGCATTCAAATCCTGTAC
CGCATGCTCTGCAAACGTCGAGACATTGTTCCCAGCTACCACAGCTATGA
GATCGACAAAATCATGAGCTTCATCATGCGCGAAATAAGTCTTCTTTCAT
CGGTCCTCCAGGAATTGGAGTCCAATAAGGGCGATAAAGTCGGCGCTGGA
CGTATGTGCTAGAAGCTTTCTAGACCAT
BS06547.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:38:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10750-RA | 996 | CG10750-PA | 1..996 | 17..1012 | 4980 | 100 | Plus |
CG10750-RB | 996 | CG10750-PB | 1..996 | 17..1012 | 4950 | 99.8 | Plus |
CG17564-RB | 1008 | CG17564-PB | 265..699 | 281..715 | 390 | 72.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:38:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10750-RA | 1175 | CG10750-RA | 119..1114 | 17..1012 | 4980 | 100 | Plus |
CG10750-RB | 1175 | CG10750-RB | 119..1114 | 17..1012 | 4950 | 99.8 | Plus |
CG17564-RB | 1305 | CG17564-RB | 471..905 | 281..715 | 390 | 72.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:38:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19300548..19301002 | 130..584 | 2275 | 100 | Plus |
2L | 23513712 | 2L | 19301058..19301345 | 585..872 | 1440 | 100 | Plus |
2L | 23513712 | 2L | 19301398..19301539 | 871..1012 | 710 | 100 | Plus |
2L | 23513712 | 2L | 19300373..19300486 | 17..130 | 570 | 100 | Plus |
2L | 23513712 | 2L | 19298996..19299291 | 576..281 | 220 | 71.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:38:34 has no hits.
BS06547.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:34 Download gff for
BS06547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10750-RA | 1..996 | 17..1012 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:51 Download gff for
BS06547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10750-RA | 68..1063 | 17..1012 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:45 Download gff for
BS06547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10750-RA | 119..1114 | 17..1012 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:34 Download gff for
BS06547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10750-RA | 68..1063 | 17..1012 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:29:23 Download gff for
BS06547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10750-RA | 119..1114 | 17..1012 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:29:23 Download gff for
BS06547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19300373..19300485 | 17..129 | 100 | -> | Plus |
2L | 19300548..19301002 | 130..584 | 100 | -> | Plus |
2L | 19301058..19301345 | 585..872 | 100 | -> | Plus |
2L | 19301400..19301539 | 873..1012 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:45 Download gff for
BS06547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19301058..19301345 | 585..872 | 100 | -> | Plus |
arm_2L | 19301400..19301539 | 873..1012 | 100 | | Plus |
arm_2L | 19300373..19300485 | 17..129 | 100 | -> | Plus |
arm_2L | 19300548..19301002 | 130..584 | 100 | -> | Plus |
BS06547.pep Sequence
Translation from 16 to 1011
> BS06547.pep
MPRRKPTIKTDVIGDLDLSPEVAIDDYRVSRQQDQFFVKPPNWDSAGDNI
EMLYIANLREYDAMKQVQIQLLKDAKRQAALNVQRIRKMYKIQERLRKRF
VEVNGFIKDCADKKRSADKSIREETVLHAEVTKEIDEFKTSIAELSTFRN
ALKATVAQFQPYERVLEEVVEVSDIFISTKDCIDRCDALMLAQVEINKLE
SQKLNEIEEMRLRMVQITSEAALTVLGLKNDLARLDRSYVSSRATCLKWE
KILSACKDTTSLYNLDKERMFDGIQILYRMLCKRRDIVPSYHSYEIDKIM
SFIMREISLLSSVLQELESNKGDKVGAGRMC*
BS06547.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10750-PA | 331 | CG10750-PA | 1..331 | 1..331 | 1665 | 100 | Plus |
CG10750-PB | 331 | CG10750-PB | 1..331 | 1..331 | 1658 | 99.7 | Plus |
CG17564-PB | 335 | CG17564-PB | 1..320 | 1..320 | 993 | 60.9 | Plus |