Clone BS06547 Report

Search the DGRC for BS06547

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:65
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG10750-RA
Protein status:BS06547.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06547.3prime Sequence

878 bp (873 high quality bases) assembled on 2005-12-03

> BS06547.3prime
ATGGTCTAGAAAGCTTCTAGCACATACGTCCAGCGCCGACTTTATCGCCC
TTATTGGACTCCAATTCCTGGAGGACCGATGAAAGAAGACTTATTTCGCG
CATGATGAAGCTCATGATTTTGTCGATCTCATAGCTGTGGTAGCTGGGAA
CAATGTCTCGACGTTTGCAGAGCATGCGGTACAGGATTTGAATGCCATCA
AACATGCGCTCCTTGTCCAGGTTGTAGAGCGACGTGGTGTCCTTGCAGGC
ACTTAGTATCTTTTCCCACTTGAGGCAAGTGGCCCGCGAGCTGACATAGG
AACGATCCAAACGGGCCAGATCGTTTTTGAGGCCCAAAACGGTCAAGGCC
GCCTCGCTGGTGATCTGAACCATTCGCAGGCGCATCTCCTCGATCTCGTT
GAGTTTCTGGCTCTCCAGCTTATTGATCTCCACCTGGGCCAACATTAGAG
CGTCACATCGATCGATGCAGTCTTTCGTTGAGATGAAGATGTCCGACACC
TCGACTACCTCCTCCAGGACCCTCTCGTATGGCTGAAACTGAGCCACCGT
GGCCTTGAGCGCATTGCGAAAGGTGCTCAGTTCGGCAATGGAGGTCTTGA
ACTCGTCTATCTCCTTGGTGACCTCCGCGTGGAGAACGGTCTCCTCGCGA
ATCGACTTATCCGCACTGCGCTTTTTGTCCGCACAATCCTTGATGAATCC
ATTCACCTCGACGAAGCGTTTGCGCAGGCGCTCCTGAATCTTGTACATCT
TGCGAATGCGCTGCACATTTAATGCGGCTTGCCGCTTGGCATCTTTGAGT
AGCTGGATCTGAACCTGCTTCATGGCGTCGTACTCCCGGAGATTGGCTAT
GTACAGCATCTCGATGTTATCCCCGGGC

BS06547.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG10750-PA 996 CG10750-RA 137..996 876..17 4300 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:25:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG10750-RA 1175 CG10750-RA 255..1114 876..17 4300 100 Minus
CG10750-RB 1175 CG10750-RB 255..1114 876..17 4270 99.8 Minus
CG17564-RB 1305 CG17564-RB 471..905 748..314 420 74 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:25:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19300571..19301002 876..445 2160 100 Minus
2L 23513712 2L 19301058..19301345 444..157 1440 100 Minus
2L 23513712 2L 19301398..19301539 158..17 710 100 Minus
2L 23513712 2L 19298996..19299291 453..748 220 71.6 Plus
Blast to na_te.dros performed on 2015-02-12 04:25:28 has no hits.

BS06547.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:44:33 Download gff for BS06547.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10750-PA 135..996 17..878 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:24:49 Download gff for BS06547.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10750-PA 135..996 17..878 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:04:43 Download gff for BS06547.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10750-RA 253..1114 17..878 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:23 Download gff for BS06547.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10750-RA 253..1114 17..878 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:23 Download gff for BS06547.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19301400..19301539 17..156 100   Minus
2L 19300569..19301002 445..878 99 -> Minus
2L 19301058..19301345 157..444 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:04:43 Download gff for BS06547.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19300569..19301002 445..878 99 -> Minus
arm_2L 19301058..19301345 157..444 100 -> Minus
arm_2L 19301400..19301539 17..156 100   Minus

BS06547.5prime Sequence

970 bp (809 high quality bases) assembled on 2005-12-03

> BS06547.5prime
GAAGTTATCAGTCGACATGCCGCGACGTAAGCCCACCATTAAGACCGATG
TGATCGGGGATCTGGACCTCAGTCCAGAGGTCGCCATCGATGACTATCGC
GTCTCTCGCCAGCAGGACCAATTCTTCGTGAAACCGCCCAATTGGGATTC
GGCCGGGGATAACATCGAGATGCTGTACATAGCCAATCTCCGGGAGTACG
ACGCCATGAAGCAGGTTCAGATCCAGCTACTCAAAGATGCCAAGCGGCAA
GCCGCATTAAATGTGCAGCGCATTCGCAAGATGTACAAGATTCAGGAGCG
CCTGCGCAAACGCTTCGTCGAGGTGAATGGATTCATCAAGGATTGTGCGG
ACAAAAAGCGCAGTGCGGATAAGTCGATTCGCGAGGAGACCGTTCTCCAC
GCGGAGGTCACCAAGGAGATAGACGAGTTCAAGACCTCCATTGCCGAACT
GAGCACCTTTCGCAATGCGCTCAAGGCCACGGTGGCTCAGTTTCAGCCAT
ACGAGAGGGTCCTGGAGGAGGTAGTCGAGGTGTCGGACATCTTCATCTCA
ACGAAAGACTGCATCGATCGATGTGACGCTCTAATGTTGGCCCAGGTGGA
GATCAATAAGCTGGAGAGCCAGAAACTCAACGAGATCGAGGAGATGCGCC
TGCGAATGGTTCAGATCACCAGCGAGGCGGCCTTGACCGTTTTGGGCCTC
AAAAACGATCTGGCCCGTTTGGATCGTTCCTATGTCAGCTCGCGGGCCAC
TTGCCTCAAGTGGGAAAAGATACTAAGTGCCTGCAAGGACACCACGTCGC
TCTACAACCTGGACAAGGAGCGCATGTTTGATGGCATTCAAATCCTGTAC
CGCATGCTCTGCAAACGTCGAGACATTGTTCCCAGCTACCACAGCTATGA
GATCGACAAAATCATGAGCTTCATCATGCGCGAAATAAGTCTTCTTTCAT
CGGTCCTCCGGAAATGGGAG

BS06547.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG10750-PA 996 CG10750-RA 1..943 17..959 4715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG10750-RA 1175 CG10750-RA 119..1072 17..970 4725 99.7 Plus
CG10750-RB 1175 CG10750-RB 119..1072 17..970 4695 99.5 Plus
CG17564-RB 1305 CG17564-RB 471..905 281..715 420 74 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19300548..19301002 130..584 2275 100 Plus
2L 23513712 2L 19301058..19301345 585..872 1440 100 Plus
2L 23513712 2L 19300373..19300486 17..130 570 100 Plus
2L 23513712 2L 19301398..19301497 871..970 455 97 Plus
2L 23513712 2L 19298996..19299291 576..281 220 71.6 Minus
Blast to na_te.dros performed on 2015-02-09 22:43:54 has no hits.

BS06547.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:44:34 Download gff for BS06547.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10750-PA 1..954 17..970 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:24:50 Download gff for BS06547.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10750-PA 1..954 17..970 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:27:38 Download gff for BS06547.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10750-RA 119..1072 17..970 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:48:07 Download gff for BS06547.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10750-RA 119..1072 17..970 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:48:07 Download gff for BS06547.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19300373..19300485 17..129 100 -> Plus
2L 19300548..19301002 130..584 100 -> Plus
2L 19301058..19301345 585..872 100 -> Plus
2L 19301400..19301497 873..970 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:27:38 Download gff for BS06547.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19300373..19300485 17..129 100 -> Plus
arm_2L 19300548..19301002 130..584 100 -> Plus
arm_2L 19301058..19301345 585..872 100 -> Plus
arm_2L 19301400..19301497 873..970 96   Plus

BS06547.complete Sequence

1028 bp (1028 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635540

> BS06547.complete
GAAGTTATCAGTCGACATGCCGCGACGTAAGCCCACCATTAAGACCGATG
TGATCGGGGATCTGGACCTCAGTCCAGAGGTCGCCATCGATGACTATCGC
GTCTCTCGCCAGCAGGACCAATTCTTCGTGAAACCGCCCAATTGGGATTC
GGCCGGGGATAACATCGAGATGCTGTACATAGCCAATCTCCGGGAGTACG
ACGCCATGAAGCAGGTTCAGATCCAGCTACTCAAAGATGCCAAGCGGCAA
GCCGCATTAAATGTGCAGCGCATTCGCAAGATGTACAAGATTCAGGAGCG
CCTGCGCAAACGCTTCGTCGAGGTGAATGGATTCATCAAGGATTGTGCGG
ACAAAAAGCGCAGTGCGGATAAGTCGATTCGCGAGGAGACCGTTCTCCAC
GCGGAGGTCACCAAGGAGATAGACGAGTTCAAGACCTCCATTGCCGAACT
GAGCACCTTTCGCAATGCGCTCAAGGCCACGGTGGCTCAGTTTCAGCCAT
ACGAGAGGGTCCTGGAGGAGGTAGTCGAGGTGTCGGACATCTTCATCTCA
ACGAAAGACTGCATCGATCGATGTGACGCTCTAATGTTGGCCCAGGTGGA
GATCAATAAGCTGGAGAGCCAGAAACTCAACGAGATCGAGGAGATGCGCC
TGCGAATGGTTCAGATCACCAGCGAGGCGGCCTTGACCGTTTTGGGCCTC
AAAAACGATCTGGCCCGTTTGGATCGTTCCTATGTCAGCTCGCGGGCCAC
TTGCCTCAAGTGGGAAAAGATACTAAGTGCCTGCAAGGACACCACGTCGC
TCTACAACCTGGACAAGGAGCGCATGTTTGATGGCATTCAAATCCTGTAC
CGCATGCTCTGCAAACGTCGAGACATTGTTCCCAGCTACCACAGCTATGA
GATCGACAAAATCATGAGCTTCATCATGCGCGAAATAAGTCTTCTTTCAT
CGGTCCTCCAGGAATTGGAGTCCAATAAGGGCGATAAAGTCGGCGCTGGA
CGTATGTGCTAGAAGCTTTCTAGACCAT

BS06547.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG10750-RA 996 CG10750-PA 1..996 17..1012 4980 100 Plus
CG10750-RB 996 CG10750-PB 1..996 17..1012 4950 99.8 Plus
CG17564-RB 1008 CG17564-PB 265..699 281..715 390 72.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:38:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG10750-RA 1175 CG10750-RA 119..1114 17..1012 4980 100 Plus
CG10750-RB 1175 CG10750-RB 119..1114 17..1012 4950 99.8 Plus
CG17564-RB 1305 CG17564-RB 471..905 281..715 390 72.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19300548..19301002 130..584 2275 100 Plus
2L 23513712 2L 19301058..19301345 585..872 1440 100 Plus
2L 23513712 2L 19301398..19301539 871..1012 710 100 Plus
2L 23513712 2L 19300373..19300486 17..130 570 100 Plus
2L 23513712 2L 19298996..19299291 576..281 220 71.6 Minus
Blast to na_te.dros performed on 2014-11-27 01:38:34 has no hits.

BS06547.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:34 Download gff for BS06547.complete
Subject Subject Range Query Range Percent Splice Strand
CG10750-RA 1..996 17..1012 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:51 Download gff for BS06547.complete
Subject Subject Range Query Range Percent Splice Strand
CG10750-RA 68..1063 17..1012 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:45 Download gff for BS06547.complete
Subject Subject Range Query Range Percent Splice Strand
CG10750-RA 119..1114 17..1012 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:34 Download gff for BS06547.complete
Subject Subject Range Query Range Percent Splice Strand
CG10750-RA 68..1063 17..1012 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:29:23 Download gff for BS06547.complete
Subject Subject Range Query Range Percent Splice Strand
CG10750-RA 119..1114 17..1012 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:29:23 Download gff for BS06547.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19300373..19300485 17..129 100 -> Plus
2L 19300548..19301002 130..584 100 -> Plus
2L 19301058..19301345 585..872 100 -> Plus
2L 19301400..19301539 873..1012 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:45 Download gff for BS06547.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19301058..19301345 585..872 100 -> Plus
arm_2L 19301400..19301539 873..1012 100   Plus
arm_2L 19300373..19300485 17..129 100 -> Plus
arm_2L 19300548..19301002 130..584 100 -> Plus

BS06547.pep Sequence

Translation from 16 to 1011

> BS06547.pep
MPRRKPTIKTDVIGDLDLSPEVAIDDYRVSRQQDQFFVKPPNWDSAGDNI
EMLYIANLREYDAMKQVQIQLLKDAKRQAALNVQRIRKMYKIQERLRKRF
VEVNGFIKDCADKKRSADKSIREETVLHAEVTKEIDEFKTSIAELSTFRN
ALKATVAQFQPYERVLEEVVEVSDIFISTKDCIDRCDALMLAQVEINKLE
SQKLNEIEEMRLRMVQITSEAALTVLGLKNDLARLDRSYVSSRATCLKWE
KILSACKDTTSLYNLDKERMFDGIQILYRMLCKRRDIVPSYHSYEIDKIM
SFIMREISLLSSVLQELESNKGDKVGAGRMC*

BS06547.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG10750-PA 331 CG10750-PA 1..331 1..331 1665 100 Plus
CG10750-PB 331 CG10750-PB 1..331 1..331 1658 99.7 Plus
CG17564-PB 335 CG17564-PB 1..320 1..320 993 60.9 Plus