Clone BS06553 Report

Search the DGRC for BS06553

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:65
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptCG5398-RA
Protein status:BS06553.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06553.3prime Sequence

747 bp (746 high quality bases) assembled on 2005-12-03

> BS06553.3prime
ATGGTCTAGAAAGCTTTCAGTTGCACACTGGAATTTCCAAGGGCTTATAA
GGTGGCGTATACGCATGATTCCACACGAAGGGCACCATGATGGCGGCCAG
GATCTGGCCAGTCAGCTGCATTAGAACCGAATTCGGACTGCCGTAGAATA
TGGCAGGCACCAATGTCTTGGCGGGGTTCATACTGGCTCCAGTTAGTTGA
ATCCCTGCGAAACTGCAAGCGATCACGAGGAGACCCATGCGAATGGCGAC
CGAGTCGAGGAACCTTCCGTTTCGCACGTCCCACAAGGAGCACCATCCGA
GCACGAGGACCGCGGTCAGCAGGCACTCGATGATGACGACCTGGTATGTG
GACAGAGTGTCCATCGGTTGTACCAGGCAAATGCCTGGCTTGCTTTTGTC
CACCAGCTCCTTGGGCAGCAGTTGCATTAGCAGGAAGTAACCAAGGAAAG
CACCGGCCATCTGACACACCACGTACATCATCATCACTTCCAGGGCGATG
TAGCCCATCAAGTAGCATGAGATCGAGATGCATGGATTCGAATGGGCTCC
GGATACGAAGCCAAACACGTGCATCACCACCATCACCGTCAGGCCATAGT
GAACGCTGGCCACCAAGAATTTGCTCTCACCACCTTGGTTCGTTGAGTCT
CCCATGCAACCGAGCAAAATCAGTAGCGCAGTGGCACTGAACTCGGTGGC
TCCGCGTATAAAGGTAAAGAAGTCCCAGATCATGTCGACTGATAACT

BS06553.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG5398-PA 717 CG5398-RA 1..717 733..17 3585 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:02:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG5398-RA 938 CG5398-RA 133..849 733..17 3585 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23602898..23603302 607..203 2025 100 Minus
2R 25286936 2R 23603366..23603552 203..17 935 100 Minus
2R 25286936 2R 23602717..23602844 733..606 640 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:02:37 has no hits.

BS06553.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:44:47 Download gff for BS06553.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5398-PA 1..717 17..733 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:25:07 Download gff for BS06553.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5398-PA 1..717 17..733 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:58:46 Download gff for BS06553.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5398-RA 123..852 12..743 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:49:00 Download gff for BS06553.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5398-RA 123..852 12..743 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:49:00 Download gff for BS06553.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23602707..23602844 606..743 97 -> Minus
2R 23602900..23603302 203..605 100 -> Minus
2R 23603367..23603555 12..202 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:58:46 Download gff for BS06553.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19490230..19490367 606..743 97 -> Minus
arm_2R 19490423..19490825 203..605 100 -> Minus
arm_2R 19490890..19491078 12..202 98   Minus

BS06553.5prime Sequence

747 bp (746 high quality bases) assembled on 2005-12-03

> BS06553.5prime
GAAGTTATCAGTCGACATGATCTGGGACTTCTTTACCTTTATACGCGGAG
CCACCGAGTTCAGTGCCACTGCGCTACTGATTTTGCTCGGTTGCATGGGA
GACTCAACGAACCAAGGTGGTGAGAGCAAATTCTTGGTGGCCAGCGTTCA
CTATGGCCTGACGGTGATGGTGGTGATGCACGTGTTTGGCTTCGTATCCG
GAGCCCATTCGAATCCATGCATCTCGATCTCATGCTACTTGATGGGCTAC
ATCGCCCTGGAAGTGATGATGATGTACGTGGTGTGTCAGATGGCCGGTGC
TTTCCTTGGTTACTTCCTGCTAATGCAACTGCTGCCCAAGGAGCTGGTGG
ACAAAAGCAAGCCAGGCATTTGCCTGGTACAACCGATGGACACTCTGTCC
ACATACCAGGTCGTCATCATCGAGTGCCTGCTGACCGCGGTCCTCGTGCT
CGGATGGTGCTCCTTGTGGGACGTGCGAAACGGAAGGTTCCTCGACTCGG
TCGCCATTCGCATGGGTCTCCTCGTGATCGCTTGCAGTTTCGCAGGGATT
CAACTAACTGGAGCCAGTATGAACCCCGCCAAGACATTGGTGCCTGCCAT
ATTCTACGGCAGTCCGAATTCGGTTCTAATGCAGCTGACTGGCCAGATCC
TGGCCGCCATCATGGTGCCCTTCGTGTGGAATCATGCGTATACGCCACCT
TATAAGCCCTTGGAAATTCCAGTGTGCAACTGAAAGCTTTCTAGACC

BS06553.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5398-PA 717 CG5398-RA 1..717 17..733 3585 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:30:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG5398-RA 938 CG5398-RA 133..849 17..733 3585 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:30:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23602898..23603302 143..547 2025 100 Plus
2R 25286936 2R 23603366..23603552 547..733 935 100 Plus
2R 25286936 2R 23602717..23602844 17..144 640 100 Plus
Blast to na_te.dros performed on 2015-02-13 08:30:55 has no hits.

BS06553.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:44:48 Download gff for BS06553.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5398-PA 1..717 17..733 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:25:09 Download gff for BS06553.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5398-PA 1..717 17..733 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:16:33 Download gff for BS06553.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5398-RA 123..852 7..738 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:20:08 Download gff for BS06553.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5398-RA 123..852 7..738 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:20:08 Download gff for BS06553.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23602707..23602844 7..144 97 -> Plus
2R 23602900..23603302 145..547 100 -> Plus
2R 23603367..23603555 548..738 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:16:33 Download gff for BS06553.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19490230..19490367 7..144 97 -> Plus
arm_2R 19490423..19490825 145..547 100 -> Plus
arm_2R 19490890..19491078 548..738 98   Plus

BS06553.complete Sequence

749 bp (749 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635541

> BS06553.complete
GAAGTTATCAGTCGACATGATCTGGGACTTCTTTACCTTTATACGCGGAG
CCACCGAGTTCAGTGCCACTGCGCTACTGATTTTGCTCGGTTGCATGGGA
GACTCAACGAACCAAGGTGGTGAGAGCAAATTCTTGGTGGCCAGCGTTCA
CTATGGCCTGACGGTGATGGTGGTGATGCACGTGTTTGGCTTCGTATCCG
GAGCCCATTCGAATCCATGCATCTCGATCTCATGCTACTTGATGGGCTAC
ATCGCCCTGGAAGTGATGATGATGTACGTGGTGTGTCAGATGGCCGGTGC
TTTCCTTGGTTACTTCCTGCTAATGCAACTGCTGCCCAAGGAGCTGGTGG
ACAAAAGCAAGCCAGGCATTTGCCTGGTACAACCGATGGACACTCTGTCC
ACATACCAGGTCGTCATCATCGAGTGCCTGCTGACCGCGGTCCTCGTGCT
CGGATGGTGCTCCTTGTGGGACGTGCGAAACGGAAGGTTCCTCGACTCGG
TCGCCATTCGCATGGGTCTCCTCGTGATCGCTTGCAGTTTCGCAGGGATT
CAACTAACTGGAGCCAGTATGAACCCCGCCAAGACATTGGTGCCTGCCAT
ATTCTACGGCAGTCCGAATTCGGTTCTAATGCAGCTGACTGGCCAGATCC
TGGCCGCCATCATGGTGCCCTTCGTGTGGAATCATGCGTATACGCCACCT
TATAAGCCCTTGGAAATTCCAGTGTGCAACTGAAAGCTTTCTAGACCAT

BS06553.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG5398-RA 717 CG5398-PA 1..717 17..733 3585 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:21:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5398-RA 938 CG5398-RA 133..849 17..733 3585 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:21:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23602898..23603302 143..547 2025 100 Plus
2R 25286936 2R 23603366..23603552 547..733 935 100 Plus
2R 25286936 2R 23602717..23602844 17..144 640 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:21:49 has no hits.

BS06553.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:24 Download gff for BS06553.complete
Subject Subject Range Query Range Percent Splice Strand
CG5398-RA 1..717 17..733 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:04 Download gff for BS06553.complete
Subject Subject Range Query Range Percent Splice Strand
CG5398-RA 123..852 7..738 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:13:09 Download gff for BS06553.complete
Subject Subject Range Query Range Percent Splice Strand
CG5398-RA 133..848 17..732 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:24 Download gff for BS06553.complete
Subject Subject Range Query Range Percent Splice Strand
CG5398-RA 123..852 7..738 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:06 Download gff for BS06553.complete
Subject Subject Range Query Range Percent Splice Strand
CG5398-RA 133..848 17..732 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:06 Download gff for BS06553.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23602717..23602844 17..144 100 -> Plus
2R 23602900..23603302 145..547 100 -> Plus
2R 23603367..23603551 548..732 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:13:09 Download gff for BS06553.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19490240..19490367 17..144 100 -> Plus
arm_2R 19490423..19490825 145..547 100 -> Plus
arm_2R 19490890..19491074 548..732 100   Plus

BS06553.pep Sequence

Translation from 16 to 732

> BS06553.pep
MIWDFFTFIRGATEFSATALLILLGCMGDSTNQGGESKFLVASVHYGLTV
MVVMHVFGFVSGAHSNPCISISCYLMGYIALEVMMMYVVCQMAGAFLGYF
LLMQLLPKELVDKSKPGICLVQPMDTLSTYQVVIIECLLTAVLVLGWCSL
WDVRNGRFLDSVAIRMGLLVIACSFAGIQLTGASMNPAKTLVPAIFYGSP
NSVLMQLTGQILAAIMVPFVWNHAYTPPYKPLEIPVCN*

BS06553.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5398-PA 238 CG5398-PA 1..238 1..238 1245 100 Plus
CG17664-PA 265 CG17664-PA 27..249 14..234 383 35 Plus
CG17664-PC 290 CG17664-PC 52..274 14..234 383 35 Plus
CG4019-PB 249 CG4019-PB 15..196 14..196 347 37.7 Plus
CG4019-PD 249 CG4019-PD 15..196 14..196 347 37.7 Plus