Clone Sequence Records
BS06553.3prime Sequence
747 bp (746 high quality bases) assembled on 2005-12-03
> BS06553.3prime
ATGGTCTAGAAAGCTTTCAGTTGCACACTGGAATTTCCAAGGGCTTATAA
GGTGGCGTATACGCATGATTCCACACGAAGGGCACCATGATGGCGGCCAG
GATCTGGCCAGTCAGCTGCATTAGAACCGAATTCGGACTGCCGTAGAATA
TGGCAGGCACCAATGTCTTGGCGGGGTTCATACTGGCTCCAGTTAGTTGA
ATCCCTGCGAAACTGCAAGCGATCACGAGGAGACCCATGCGAATGGCGAC
CGAGTCGAGGAACCTTCCGTTTCGCACGTCCCACAAGGAGCACCATCCGA
GCACGAGGACCGCGGTCAGCAGGCACTCGATGATGACGACCTGGTATGTG
GACAGAGTGTCCATCGGTTGTACCAGGCAAATGCCTGGCTTGCTTTTGTC
CACCAGCTCCTTGGGCAGCAGTTGCATTAGCAGGAAGTAACCAAGGAAAG
CACCGGCCATCTGACACACCACGTACATCATCATCACTTCCAGGGCGATG
TAGCCCATCAAGTAGCATGAGATCGAGATGCATGGATTCGAATGGGCTCC
GGATACGAAGCCAAACACGTGCATCACCACCATCACCGTCAGGCCATAGT
GAACGCTGGCCACCAAGAATTTGCTCTCACCACCTTGGTTCGTTGAGTCT
CCCATGCAACCGAGCAAAATCAGTAGCGCAGTGGCACTGAACTCGGTGGC
TCCGCGTATAAAGGTAAAGAAGTCCCAGATCATGTCGACTGATAACT
BS06553.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5398-PA | 717 | CG5398-RA | 1..717 | 733..17 | 3585 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:02:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5398-RA | 938 | CG5398-RA | 133..849 | 733..17 | 3585 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:02:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23602898..23603302 | 607..203 | 2025 | 100 | Minus |
2R | 25286936 | 2R | 23603366..23603552 | 203..17 | 935 | 100 | Minus |
2R | 25286936 | 2R | 23602717..23602844 | 733..606 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:02:37 has no hits.
BS06553.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:44:47 Download gff for
BS06553.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5398-PA | 1..717 | 17..733 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:25:07 Download gff for
BS06553.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5398-PA | 1..717 | 17..733 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:58:46 Download gff for
BS06553.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5398-RA | 123..852 | 12..743 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:49:00 Download gff for
BS06553.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5398-RA | 123..852 | 12..743 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:49:00 Download gff for
BS06553.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23602707..23602844 | 606..743 | 97 | -> | Minus |
2R | 23602900..23603302 | 203..605 | 100 | -> | Minus |
2R | 23603367..23603555 | 12..202 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:58:46 Download gff for
BS06553.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19490230..19490367 | 606..743 | 97 | -> | Minus |
arm_2R | 19490423..19490825 | 203..605 | 100 | -> | Minus |
arm_2R | 19490890..19491078 | 12..202 | 98 | | Minus |
BS06553.5prime Sequence
747 bp (746 high quality bases) assembled on 2005-12-03
> BS06553.5prime
GAAGTTATCAGTCGACATGATCTGGGACTTCTTTACCTTTATACGCGGAG
CCACCGAGTTCAGTGCCACTGCGCTACTGATTTTGCTCGGTTGCATGGGA
GACTCAACGAACCAAGGTGGTGAGAGCAAATTCTTGGTGGCCAGCGTTCA
CTATGGCCTGACGGTGATGGTGGTGATGCACGTGTTTGGCTTCGTATCCG
GAGCCCATTCGAATCCATGCATCTCGATCTCATGCTACTTGATGGGCTAC
ATCGCCCTGGAAGTGATGATGATGTACGTGGTGTGTCAGATGGCCGGTGC
TTTCCTTGGTTACTTCCTGCTAATGCAACTGCTGCCCAAGGAGCTGGTGG
ACAAAAGCAAGCCAGGCATTTGCCTGGTACAACCGATGGACACTCTGTCC
ACATACCAGGTCGTCATCATCGAGTGCCTGCTGACCGCGGTCCTCGTGCT
CGGATGGTGCTCCTTGTGGGACGTGCGAAACGGAAGGTTCCTCGACTCGG
TCGCCATTCGCATGGGTCTCCTCGTGATCGCTTGCAGTTTCGCAGGGATT
CAACTAACTGGAGCCAGTATGAACCCCGCCAAGACATTGGTGCCTGCCAT
ATTCTACGGCAGTCCGAATTCGGTTCTAATGCAGCTGACTGGCCAGATCC
TGGCCGCCATCATGGTGCCCTTCGTGTGGAATCATGCGTATACGCCACCT
TATAAGCCCTTGGAAATTCCAGTGTGCAACTGAAAGCTTTCTAGACC
BS06553.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5398-PA | 717 | CG5398-RA | 1..717 | 17..733 | 3585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:30:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5398-RA | 938 | CG5398-RA | 133..849 | 17..733 | 3585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:30:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23602898..23603302 | 143..547 | 2025 | 100 | Plus |
2R | 25286936 | 2R | 23603366..23603552 | 547..733 | 935 | 100 | Plus |
2R | 25286936 | 2R | 23602717..23602844 | 17..144 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:30:55 has no hits.
BS06553.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:44:48 Download gff for
BS06553.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5398-PA | 1..717 | 17..733 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:25:09 Download gff for
BS06553.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5398-PA | 1..717 | 17..733 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:16:33 Download gff for
BS06553.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5398-RA | 123..852 | 7..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:20:08 Download gff for
BS06553.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5398-RA | 123..852 | 7..738 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:20:08 Download gff for
BS06553.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23602707..23602844 | 7..144 | 97 | -> | Plus |
2R | 23602900..23603302 | 145..547 | 100 | -> | Plus |
2R | 23603367..23603555 | 548..738 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:16:33 Download gff for
BS06553.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19490230..19490367 | 7..144 | 97 | -> | Plus |
arm_2R | 19490423..19490825 | 145..547 | 100 | -> | Plus |
arm_2R | 19490890..19491078 | 548..738 | 98 | | Plus |
BS06553.complete Sequence
749 bp (749 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635541
> BS06553.complete
GAAGTTATCAGTCGACATGATCTGGGACTTCTTTACCTTTATACGCGGAG
CCACCGAGTTCAGTGCCACTGCGCTACTGATTTTGCTCGGTTGCATGGGA
GACTCAACGAACCAAGGTGGTGAGAGCAAATTCTTGGTGGCCAGCGTTCA
CTATGGCCTGACGGTGATGGTGGTGATGCACGTGTTTGGCTTCGTATCCG
GAGCCCATTCGAATCCATGCATCTCGATCTCATGCTACTTGATGGGCTAC
ATCGCCCTGGAAGTGATGATGATGTACGTGGTGTGTCAGATGGCCGGTGC
TTTCCTTGGTTACTTCCTGCTAATGCAACTGCTGCCCAAGGAGCTGGTGG
ACAAAAGCAAGCCAGGCATTTGCCTGGTACAACCGATGGACACTCTGTCC
ACATACCAGGTCGTCATCATCGAGTGCCTGCTGACCGCGGTCCTCGTGCT
CGGATGGTGCTCCTTGTGGGACGTGCGAAACGGAAGGTTCCTCGACTCGG
TCGCCATTCGCATGGGTCTCCTCGTGATCGCTTGCAGTTTCGCAGGGATT
CAACTAACTGGAGCCAGTATGAACCCCGCCAAGACATTGGTGCCTGCCAT
ATTCTACGGCAGTCCGAATTCGGTTCTAATGCAGCTGACTGGCCAGATCC
TGGCCGCCATCATGGTGCCCTTCGTGTGGAATCATGCGTATACGCCACCT
TATAAGCCCTTGGAAATTCCAGTGTGCAACTGAAAGCTTTCTAGACCAT
BS06553.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:21:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5398-RA | 717 | CG5398-PA | 1..717 | 17..733 | 3585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:21:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5398-RA | 938 | CG5398-RA | 133..849 | 17..733 | 3585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:21:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23602898..23603302 | 143..547 | 2025 | 100 | Plus |
2R | 25286936 | 2R | 23603366..23603552 | 547..733 | 935 | 100 | Plus |
2R | 25286936 | 2R | 23602717..23602844 | 17..144 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:21:49 has no hits.
BS06553.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:24 Download gff for
BS06553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5398-RA | 1..717 | 17..733 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:04 Download gff for
BS06553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5398-RA | 123..852 | 7..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:13:09 Download gff for
BS06553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5398-RA | 133..848 | 17..732 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:24 Download gff for
BS06553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5398-RA | 123..852 | 7..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:06 Download gff for
BS06553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5398-RA | 133..848 | 17..732 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:06 Download gff for
BS06553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23602717..23602844 | 17..144 | 100 | -> | Plus |
2R | 23602900..23603302 | 145..547 | 100 | -> | Plus |
2R | 23603367..23603551 | 548..732 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:13:09 Download gff for
BS06553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19490240..19490367 | 17..144 | 100 | -> | Plus |
arm_2R | 19490423..19490825 | 145..547 | 100 | -> | Plus |
arm_2R | 19490890..19491074 | 548..732 | 100 | | Plus |
BS06553.pep Sequence
Translation from 16 to 732
> BS06553.pep
MIWDFFTFIRGATEFSATALLILLGCMGDSTNQGGESKFLVASVHYGLTV
MVVMHVFGFVSGAHSNPCISISCYLMGYIALEVMMMYVVCQMAGAFLGYF
LLMQLLPKELVDKSKPGICLVQPMDTLSTYQVVIIECLLTAVLVLGWCSL
WDVRNGRFLDSVAIRMGLLVIACSFAGIQLTGASMNPAKTLVPAIFYGSP
NSVLMQLTGQILAAIMVPFVWNHAYTPPYKPLEIPVCN*
BS06553.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5398-PA | 238 | CG5398-PA | 1..238 | 1..238 | 1245 | 100 | Plus |
CG17664-PA | 265 | CG17664-PA | 27..249 | 14..234 | 383 | 35 | Plus |
CG17664-PC | 290 | CG17664-PC | 52..274 | 14..234 | 383 | 35 | Plus |
CG4019-PB | 249 | CG4019-PB | 15..196 | 14..196 | 347 | 37.7 | Plus |
CG4019-PD | 249 | CG4019-PD | 15..196 | 14..196 | 347 | 37.7 | Plus |