Clone BS06555 Report

Search the DGRC for BS06555

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:65
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptPglym87-RA
Protein status:BS06555.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06555.3prime Sequence

909 bp (859 high quality bases) assembled on 2005-12-03

> BS06555.3prime
ATGGTCTAGAAAGCTTTCACTTGGCTTTGCCCTGGTTGGCCACCGACTCC
ATTGCCTTCTTCACCGTCTCCGGATCGCCGAGGAACTTCAACGTGGCCAA
AGGCTTGAGGCTCTCGTCTAGTTCGTAGACGAAAGGAATGCCAGTGGGCA
GGTTGAGGCTCATAATGTCCTTGTCAGAGATGCATTCCAAGTGCTTGACC
ACGCCCCGCAGGCTGTTGCCGTGGGCGGCGATCAGGACACGCATTCCATC
CTTGATCTGGGGCACTATGACCTCGTTCCAGTAGGGCAAGGTGCGCTCGA
TGGTGAGCTTGAGGGACTCGGATTTGGGGAACTCCTCCGGCTTCAGTTGG
TCCTTGTAGCGCGGATCCTCAACAATGCAGGCGTAGTACTCGTGATCCTT
CTCCATTGGCGGCGGTGGGGTGTCAAAGCTGCGGCGCCAGATCTTAACCT
TCTCCTCGCCGAACTTCTTGGCGGTCTCGGCCTTATTCAGTCCCGTCAGT
CCGCCGTAGTGGCGCTCGTTGAGGCGCCACGTGGTGCACACCGGAATCTT
CTTGTGCTCGCTGGACTTTAGGGCGGCCCTGAGTGTCTCCTGGGCTCTGG
TCAGCACCGAGGTGTGGGCCACATCGAACTCAATTTTGGCATCTTTGAGC
GCTTTGCCAGCGGCACAGGCCTCCTGCTGCCCCTTCTCCGATAGCTTGGC
ATCGAACCATCCGCAGAATAGGTTCTTCTGATTCCATTCGGACTCTCCAT
GACGAACCATCACAATCCTGTACTTGCCCTTCTTCTCGGCCTGCTTTCCG
CCGGATGATGACTTCGAGAACGGGCAGCGGGCTTCGATGTTCGCCACGCG
ACACAGCAATTGGCCACACCACGAATTCCTGGCCAGAGCCCACATGTCGA
CTGATAACT

BS06555.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG17645-PA 879 Pglym87-RA 6..879 890..17 4370 100 Minus
CG1721-PA 768 Pglym78-RA 154..186 631..599 165 100 Minus
CG1721-PB 768 Pglym78-RB 154..186 631..599 165 100 Minus
CG1721-PC 768 Pglym78-RC 154..186 631..599 165 100 Minus
CG1721-PA 768 Pglym78-RA 442..518 343..267 160 88.3 Minus
CG1721-PB 768 Pglym78-RB 442..518 343..267 160 88.3 Minus
CG1721-PC 768 Pglym78-RC 442..518 343..267 160 88.3 Minus
CG1721-PA 768 Pglym78-RA 256..315 529..470 150 90 Minus
CG1721-PB 768 Pglym78-RB 256..315 529..470 150 90 Minus
CG1721-PC 768 Pglym78-RC 256..315 529..470 150 90 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:49:50
Subject Length Description Subject Range Query Range Score Percent Strand
Pglym87-RA 1085 CG17645-RA 53..931 895..17 4380 99.9 Minus
Pglym78-RC 1042 CG1721-RC 115..874 778..19 1240 77.9 Minus
Pglym78-RB 1022 CG1721-RB 95..854 778..19 1240 77.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:49:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12231799..12232677 17..895 4380 99.9 Plus
3R 32079331 3R 29149011..29149498 679..192 790 77.5 Minus
3R 32079331 3R 29149594..29149733 158..19 295 80.7 Minus
Blast to na_te.dros performed on 2015-01-31 16:49:46 has no hits.

BS06555.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:44:52 Download gff for BS06555.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17645-PA 1..879 17..895 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:25:14 Download gff for BS06555.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17645-PA 1..879 17..895 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:27:42 Download gff for BS06555.3prime
Subject Subject Range Query Range Percent Splice Strand
Pglym87-RA 53..931 17..895 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:45:11 Download gff for BS06555.3prime
Subject Subject Range Query Range Percent Splice Strand
Pglym87-RA 53..931 17..895 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:45:11 Download gff for BS06555.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12231799..12232677 17..895 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:27:42 Download gff for BS06555.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8057521..8058399 17..895 99   Plus

BS06555.5prime Sequence

909 bp (812 high quality bases) assembled on 2005-12-03

> BS06555.5prime
GAAGTTATCAGTCGACATGTTGGCTCTGGCCAGGAATTCGTGGTGTGGCC
AATTGCTGTGTCGCGTGGCGAACATCGAAGCCCGCTGCCCGTTCTCGAAG
TCATCATCCGGCGGAAAGCAGGCCGAGAAGAAGGGCAAGTACAGGATTGT
GATGGTTCGTCATGGAGAGTCCGAATGGAATCAGAAGAACCTATTCTGCG
GATGGTTCGATGCCAAGCTATCGGAGAAGGGGCAGCAGGAGGCCTGTGCC
GCTGGCAAAGCGCTCAAAGATGCCAAAATTGAGTTCGATGTGGCCCACAC
CTCGGTGCTGACCAGAGCCCAGGAGACACTCAGGGCCGCCCTAAAGTCCA
GCGAGCACAAGAAGATTCCGGTGTGCACCACGTGGCGCCTCAACGAGCGC
CACTACGGCGGACTGACGGGACTGAATAAGGCCGAGACCGCCAAGAAGTT
CGGCGAGGAGAAGGTTAAGATCTGGCGCCGCAGCTTTGACACCCCACCGC
CGCCAATGGAGAAGGATCACGAGTACTACGCCTGCATTGTTGAGGATCCG
CGCTACAAGGACCAACTGAAGCCGGAGGAGTTCCCCAAATCCGAGTCCCT
CAAGCTCACCATCGAGCGCACCTTGCCCTACTGGAACGAGGTCATAGTGC
CCCAGATCAAGGATGGAATGCGTGTCCTGATCGCCGCCCACGGCAACAGC
CTGCGGGGCGTGGTCAAGCACTTGGAATGCATCTCTGACAAGGACATTAT
GAGCCTCAACCTGCCCACTGGCATTCCTTTCGTCTACGAACTAGACGAGA
GCCTCAAGCCTTTGGCCACGTTGAAGTTCCTCGGCGATCCGGAGACGGTG
AAGAAGGCAATGGAGTCGGTGGCCAACCAGGGCAAAGCCAAGTGAAAGCT
TTCTAGACC

BS06555.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG17645-PA 879 Pglym87-RA 1..879 17..895 4395 100 Plus
CG1721-PA 768 Pglym78-RA 154..186 281..313 165 100 Plus
CG1721-PB 768 Pglym78-RB 154..186 281..313 165 100 Plus
CG1721-PC 768 Pglym78-RC 154..186 281..313 165 100 Plus
CG1721-PA 768 Pglym78-RA 442..518 569..645 160 88.3 Plus
CG1721-PB 768 Pglym78-RB 442..518 569..645 160 88.3 Plus
CG1721-PC 768 Pglym78-RC 442..518 569..645 160 88.3 Plus
CG1721-PA 768 Pglym78-RA 256..315 383..442 150 90 Plus
CG1721-PB 768 Pglym78-RB 256..315 383..442 150 90 Plus
CG1721-PC 768 Pglym78-RC 256..315 383..442 150 90 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
Pglym87-RA 1085 CG17645-RA 53..931 17..895 4395 100 Plus
Pglym78-RC 1042 CG1721-RC 115..874 134..893 1240 77.9 Plus
Pglym78-RB 1022 CG1721-RB 95..854 134..893 1240 77.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12231799..12232677 895..17 4395 100 Minus
3R 32079331 3R 29149011..29149498 233..720 790 77.5 Plus
3R 32079331 3R 29149594..29149733 754..893 295 80.7 Plus
Blast to na_te.dros performed on 2015-02-11 10:34:00 has no hits.

BS06555.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:44:54 Download gff for BS06555.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17645-PA 1..879 17..895 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:25:15 Download gff for BS06555.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17645-PA 1..879 17..895 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:23:06 Download gff for BS06555.5prime
Subject Subject Range Query Range Percent Splice Strand
Pglym87-RA 53..931 17..895 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:26:56 Download gff for BS06555.5prime
Subject Subject Range Query Range Percent Splice Strand
Pglym87-RA 53..931 17..895 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:26:56 Download gff for BS06555.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12231799..12232677 17..895 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:23:06 Download gff for BS06555.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8057521..8058399 17..895 100   Minus

BS06555.complete Sequence

911 bp (911 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635542

> BS06555.complete
GAAGTTATCAGTCGACATGTTGGCTCTGGCCAGGAATTCGTGGTGTGGCC
AATTGCTGTGTCGCGTGGCGAACATCGAAGCCCGCTGCCCGTTCTCGAAG
TCATCATCCGGCGGAAAGCAGGCCGAGAAGAAGGGCAAGTACAGGATTGT
GATGGTTCGTCATGGAGAGTCCGAATGGAATCAGAAGAACCTATTCTGCG
GATGGTTCGATGCCAAGCTATCGGAGAAGGGGCAGCAGGAGGCCTGTGCC
GCTGGCAAAGCGCTCAAAGATGCCAAAATTGAGTTCGATGTGGCCCACAC
CTCGGTGCTGACCAGAGCCCAGGAGACACTCAGGGCCGCCCTAAAGTCCA
GCGAGCACAAGAAGATTCCGGTGTGCACCACGTGGCGCCTCAACGAGCGC
CACTACGGCGGACTGACGGGACTGAATAAGGCCGAGACCGCCAAGAAGTT
CGGCGAGGAGAAGGTTAAGATCTGGCGCCGCAGCTTTGACACCCCACCGC
CGCCAATGGAGAAGGATCACGAGTACTACGCCTGCATTGTTGAGGATCCG
CGCTACAAGGACCAACTGAAGCCGGAGGAGTTCCCCAAATCCGAGTCCCT
CAAGCTCACCATCGAGCGCACCTTGCCCTACTGGAACGAGGTCATAGTGC
CCCAGATCAAGGATGGAATGCGTGTCCTGATCGCCGCCCACGGCAACAGC
CTGCGGGGCGTGGTCAAGCACTTGGAATGCATCTCTGACAAGGACATTAT
GAGCCTCAACCTGCCCACTGGCATTCCTTTCGTCTACGAACTAGACGAGA
GCCTCAAGCCTTTGGCCACGTTGAAGTTCCTCGGCGATCCGGAGACGGTG
AAGAAGGCAATGGAGTCGGTGGCCAACCAGGGCAAAGCCAAGTGAAAGCT
TTCTAGACCAT

BS06555.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
Pglym87-RA 879 CG17645-PA 1..879 17..895 4395 100 Plus
Pglym78-RC 768 CG1721-PC 7..766 134..893 1220 77.4 Plus
Pglym78-RB 768 CG1721-PB 7..766 134..893 1220 77.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:01:45
Subject Length Description Subject Range Query Range Score Percent Strand
Pglym87-RA 1085 CG17645-RA 53..931 17..895 4395 100 Plus
Pglym78-RC 1042 CG1721-RC 115..874 134..893 1220 77.4 Plus
Pglym78-RB 1022 CG1721-RB 95..854 134..893 1220 77.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12231799..12232677 895..17 4395 100 Minus
3R 32079331 3R 29149011..29149498 233..720 790 77.5 Plus
3R 32079331 3R 29149594..29149733 754..893 295 80.7 Plus
Blast to na_te.dros performed on 2014-11-27 21:01:43 has no hits.

BS06555.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:00 Download gff for BS06555.complete
Subject Subject Range Query Range Percent Splice Strand
Pglym87-RA 1..879 17..895 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:54 Download gff for BS06555.complete
Subject Subject Range Query Range Percent Splice Strand
Pglym87-RA 77..955 17..895 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:05 Download gff for BS06555.complete
Subject Subject Range Query Range Percent Splice Strand
Pglym87-RA 58..930 22..894 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:01 Download gff for BS06555.complete
Subject Subject Range Query Range Percent Splice Strand
Pglym87-RA 77..955 17..895 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:12 Download gff for BS06555.complete
Subject Subject Range Query Range Percent Splice Strand
Pglym87-RA 58..930 22..894 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:12 Download gff for BS06555.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12231800..12232672 22..894 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:05 Download gff for BS06555.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8057522..8058394 22..894 100   Minus

BS06555.pep Sequence

Translation from 16 to 894

> BS06555.pep
MLALARNSWCGQLLCRVANIEARCPFSKSSSGGKQAEKKGKYRIVMVRHG
ESEWNQKNLFCGWFDAKLSEKGQQEACAAGKALKDAKIEFDVAHTSVLTR
AQETLRAALKSSEHKKIPVCTTWRLNERHYGGLTGLNKAETAKKFGEEKV
KIWRRSFDTPPPPMEKDHEYYACIVEDPRYKDQLKPEEFPKSESLKLTIE
RTLPYWNEVIVPQIKDGMRVLIAAHGNSLRGVVKHLECISDKDIMSLNLP
TGIPFVYELDESLKPLATLKFLGDPETVKKAMESVANQGKAK*

BS06555.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:43
Subject Length Description Subject Range Query Range Score Percent Strand
Pglym87-PA 292 CG17645-PA 1..292 1..292 1544 100 Plus
Pglym78-PC 255 CG1721-PC 3..255 40..292 1042 75.9 Plus
Pglym78-PB 255 CG1721-PB 3..255 40..292 1042 75.9 Plus
Pglym78-PA 255 CG1721-PA 3..255 40..292 1042 75.9 Plus
CG7059-PC 253 CG7059-PC 6..252 43..289 486 41 Plus