Clone Sequence Records
BS06555.3prime Sequence
909 bp (859 high quality bases) assembled on 2005-12-03
> BS06555.3prime
ATGGTCTAGAAAGCTTTCACTTGGCTTTGCCCTGGTTGGCCACCGACTCC
ATTGCCTTCTTCACCGTCTCCGGATCGCCGAGGAACTTCAACGTGGCCAA
AGGCTTGAGGCTCTCGTCTAGTTCGTAGACGAAAGGAATGCCAGTGGGCA
GGTTGAGGCTCATAATGTCCTTGTCAGAGATGCATTCCAAGTGCTTGACC
ACGCCCCGCAGGCTGTTGCCGTGGGCGGCGATCAGGACACGCATTCCATC
CTTGATCTGGGGCACTATGACCTCGTTCCAGTAGGGCAAGGTGCGCTCGA
TGGTGAGCTTGAGGGACTCGGATTTGGGGAACTCCTCCGGCTTCAGTTGG
TCCTTGTAGCGCGGATCCTCAACAATGCAGGCGTAGTACTCGTGATCCTT
CTCCATTGGCGGCGGTGGGGTGTCAAAGCTGCGGCGCCAGATCTTAACCT
TCTCCTCGCCGAACTTCTTGGCGGTCTCGGCCTTATTCAGTCCCGTCAGT
CCGCCGTAGTGGCGCTCGTTGAGGCGCCACGTGGTGCACACCGGAATCTT
CTTGTGCTCGCTGGACTTTAGGGCGGCCCTGAGTGTCTCCTGGGCTCTGG
TCAGCACCGAGGTGTGGGCCACATCGAACTCAATTTTGGCATCTTTGAGC
GCTTTGCCAGCGGCACAGGCCTCCTGCTGCCCCTTCTCCGATAGCTTGGC
ATCGAACCATCCGCAGAATAGGTTCTTCTGATTCCATTCGGACTCTCCAT
GACGAACCATCACAATCCTGTACTTGCCCTTCTTCTCGGCCTGCTTTCCG
CCGGATGATGACTTCGAGAACGGGCAGCGGGCTTCGATGTTCGCCACGCG
ACACAGCAATTGGCCACACCACGAATTCCTGGCCAGAGCCCACATGTCGA
CTGATAACT
BS06555.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17645-PA | 879 | Pglym87-RA | 6..879 | 890..17 | 4370 | 100 | Minus |
CG1721-PA | 768 | Pglym78-RA | 154..186 | 631..599 | 165 | 100 | Minus |
CG1721-PB | 768 | Pglym78-RB | 154..186 | 631..599 | 165 | 100 | Minus |
CG1721-PC | 768 | Pglym78-RC | 154..186 | 631..599 | 165 | 100 | Minus |
CG1721-PA | 768 | Pglym78-RA | 442..518 | 343..267 | 160 | 88.3 | Minus |
CG1721-PB | 768 | Pglym78-RB | 442..518 | 343..267 | 160 | 88.3 | Minus |
CG1721-PC | 768 | Pglym78-RC | 442..518 | 343..267 | 160 | 88.3 | Minus |
CG1721-PA | 768 | Pglym78-RA | 256..315 | 529..470 | 150 | 90 | Minus |
CG1721-PB | 768 | Pglym78-RB | 256..315 | 529..470 | 150 | 90 | Minus |
CG1721-PC | 768 | Pglym78-RC | 256..315 | 529..470 | 150 | 90 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:49:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pglym87-RA | 1085 | CG17645-RA | 53..931 | 895..17 | 4380 | 99.9 | Minus |
Pglym78-RC | 1042 | CG1721-RC | 115..874 | 778..19 | 1240 | 77.9 | Minus |
Pglym78-RB | 1022 | CG1721-RB | 95..854 | 778..19 | 1240 | 77.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:49:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12231799..12232677 | 17..895 | 4380 | 99.9 | Plus |
3R | 32079331 | 3R | 29149011..29149498 | 679..192 | 790 | 77.5 | Minus |
3R | 32079331 | 3R | 29149594..29149733 | 158..19 | 295 | 80.7 | Minus |
Blast to na_te.dros performed on 2015-01-31 16:49:46 has no hits.
BS06555.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:44:52 Download gff for
BS06555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17645-PA | 1..879 | 17..895 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:25:14 Download gff for
BS06555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17645-PA | 1..879 | 17..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:27:42 Download gff for
BS06555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pglym87-RA | 53..931 | 17..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:45:11 Download gff for
BS06555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pglym87-RA | 53..931 | 17..895 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:45:11 Download gff for
BS06555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12231799..12232677 | 17..895 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:27:42 Download gff for
BS06555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8057521..8058399 | 17..895 | 99 | | Plus |
BS06555.5prime Sequence
909 bp (812 high quality bases) assembled on 2005-12-03
> BS06555.5prime
GAAGTTATCAGTCGACATGTTGGCTCTGGCCAGGAATTCGTGGTGTGGCC
AATTGCTGTGTCGCGTGGCGAACATCGAAGCCCGCTGCCCGTTCTCGAAG
TCATCATCCGGCGGAAAGCAGGCCGAGAAGAAGGGCAAGTACAGGATTGT
GATGGTTCGTCATGGAGAGTCCGAATGGAATCAGAAGAACCTATTCTGCG
GATGGTTCGATGCCAAGCTATCGGAGAAGGGGCAGCAGGAGGCCTGTGCC
GCTGGCAAAGCGCTCAAAGATGCCAAAATTGAGTTCGATGTGGCCCACAC
CTCGGTGCTGACCAGAGCCCAGGAGACACTCAGGGCCGCCCTAAAGTCCA
GCGAGCACAAGAAGATTCCGGTGTGCACCACGTGGCGCCTCAACGAGCGC
CACTACGGCGGACTGACGGGACTGAATAAGGCCGAGACCGCCAAGAAGTT
CGGCGAGGAGAAGGTTAAGATCTGGCGCCGCAGCTTTGACACCCCACCGC
CGCCAATGGAGAAGGATCACGAGTACTACGCCTGCATTGTTGAGGATCCG
CGCTACAAGGACCAACTGAAGCCGGAGGAGTTCCCCAAATCCGAGTCCCT
CAAGCTCACCATCGAGCGCACCTTGCCCTACTGGAACGAGGTCATAGTGC
CCCAGATCAAGGATGGAATGCGTGTCCTGATCGCCGCCCACGGCAACAGC
CTGCGGGGCGTGGTCAAGCACTTGGAATGCATCTCTGACAAGGACATTAT
GAGCCTCAACCTGCCCACTGGCATTCCTTTCGTCTACGAACTAGACGAGA
GCCTCAAGCCTTTGGCCACGTTGAAGTTCCTCGGCGATCCGGAGACGGTG
AAGAAGGCAATGGAGTCGGTGGCCAACCAGGGCAAAGCCAAGTGAAAGCT
TTCTAGACC
BS06555.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17645-PA | 879 | Pglym87-RA | 1..879 | 17..895 | 4395 | 100 | Plus |
CG1721-PA | 768 | Pglym78-RA | 154..186 | 281..313 | 165 | 100 | Plus |
CG1721-PB | 768 | Pglym78-RB | 154..186 | 281..313 | 165 | 100 | Plus |
CG1721-PC | 768 | Pglym78-RC | 154..186 | 281..313 | 165 | 100 | Plus |
CG1721-PA | 768 | Pglym78-RA | 442..518 | 569..645 | 160 | 88.3 | Plus |
CG1721-PB | 768 | Pglym78-RB | 442..518 | 569..645 | 160 | 88.3 | Plus |
CG1721-PC | 768 | Pglym78-RC | 442..518 | 569..645 | 160 | 88.3 | Plus |
CG1721-PA | 768 | Pglym78-RA | 256..315 | 383..442 | 150 | 90 | Plus |
CG1721-PB | 768 | Pglym78-RB | 256..315 | 383..442 | 150 | 90 | Plus |
CG1721-PC | 768 | Pglym78-RC | 256..315 | 383..442 | 150 | 90 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:34:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pglym87-RA | 1085 | CG17645-RA | 53..931 | 17..895 | 4395 | 100 | Plus |
Pglym78-RC | 1042 | CG1721-RC | 115..874 | 134..893 | 1240 | 77.9 | Plus |
Pglym78-RB | 1022 | CG1721-RB | 95..854 | 134..893 | 1240 | 77.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:33:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12231799..12232677 | 895..17 | 4395 | 100 | Minus |
3R | 32079331 | 3R | 29149011..29149498 | 233..720 | 790 | 77.5 | Plus |
3R | 32079331 | 3R | 29149594..29149733 | 754..893 | 295 | 80.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:34:00 has no hits.
BS06555.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:44:54 Download gff for
BS06555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17645-PA | 1..879 | 17..895 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:25:15 Download gff for
BS06555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17645-PA | 1..879 | 17..895 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:23:06 Download gff for
BS06555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pglym87-RA | 53..931 | 17..895 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:26:56 Download gff for
BS06555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pglym87-RA | 53..931 | 17..895 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:26:56 Download gff for
BS06555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12231799..12232677 | 17..895 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:23:06 Download gff for
BS06555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8057521..8058399 | 17..895 | 100 | | Minus |
BS06555.complete Sequence
911 bp (911 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635542
> BS06555.complete
GAAGTTATCAGTCGACATGTTGGCTCTGGCCAGGAATTCGTGGTGTGGCC
AATTGCTGTGTCGCGTGGCGAACATCGAAGCCCGCTGCCCGTTCTCGAAG
TCATCATCCGGCGGAAAGCAGGCCGAGAAGAAGGGCAAGTACAGGATTGT
GATGGTTCGTCATGGAGAGTCCGAATGGAATCAGAAGAACCTATTCTGCG
GATGGTTCGATGCCAAGCTATCGGAGAAGGGGCAGCAGGAGGCCTGTGCC
GCTGGCAAAGCGCTCAAAGATGCCAAAATTGAGTTCGATGTGGCCCACAC
CTCGGTGCTGACCAGAGCCCAGGAGACACTCAGGGCCGCCCTAAAGTCCA
GCGAGCACAAGAAGATTCCGGTGTGCACCACGTGGCGCCTCAACGAGCGC
CACTACGGCGGACTGACGGGACTGAATAAGGCCGAGACCGCCAAGAAGTT
CGGCGAGGAGAAGGTTAAGATCTGGCGCCGCAGCTTTGACACCCCACCGC
CGCCAATGGAGAAGGATCACGAGTACTACGCCTGCATTGTTGAGGATCCG
CGCTACAAGGACCAACTGAAGCCGGAGGAGTTCCCCAAATCCGAGTCCCT
CAAGCTCACCATCGAGCGCACCTTGCCCTACTGGAACGAGGTCATAGTGC
CCCAGATCAAGGATGGAATGCGTGTCCTGATCGCCGCCCACGGCAACAGC
CTGCGGGGCGTGGTCAAGCACTTGGAATGCATCTCTGACAAGGACATTAT
GAGCCTCAACCTGCCCACTGGCATTCCTTTCGTCTACGAACTAGACGAGA
GCCTCAAGCCTTTGGCCACGTTGAAGTTCCTCGGCGATCCGGAGACGGTG
AAGAAGGCAATGGAGTCGGTGGCCAACCAGGGCAAAGCCAAGTGAAAGCT
TTCTAGACCAT
BS06555.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:01:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pglym87-RA | 879 | CG17645-PA | 1..879 | 17..895 | 4395 | 100 | Plus |
Pglym78-RC | 768 | CG1721-PC | 7..766 | 134..893 | 1220 | 77.4 | Plus |
Pglym78-RB | 768 | CG1721-PB | 7..766 | 134..893 | 1220 | 77.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:01:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pglym87-RA | 1085 | CG17645-RA | 53..931 | 17..895 | 4395 | 100 | Plus |
Pglym78-RC | 1042 | CG1721-RC | 115..874 | 134..893 | 1220 | 77.4 | Plus |
Pglym78-RB | 1022 | CG1721-RB | 95..854 | 134..893 | 1220 | 77.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:01:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12231799..12232677 | 895..17 | 4395 | 100 | Minus |
3R | 32079331 | 3R | 29149011..29149498 | 233..720 | 790 | 77.5 | Plus |
3R | 32079331 | 3R | 29149594..29149733 | 754..893 | 295 | 80.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:01:43 has no hits.
BS06555.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:00 Download gff for
BS06555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pglym87-RA | 1..879 | 17..895 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:54 Download gff for
BS06555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pglym87-RA | 77..955 | 17..895 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:05 Download gff for
BS06555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pglym87-RA | 58..930 | 22..894 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:01 Download gff for
BS06555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pglym87-RA | 77..955 | 17..895 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:12 Download gff for
BS06555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pglym87-RA | 58..930 | 22..894 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:12 Download gff for
BS06555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12231800..12232672 | 22..894 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:05 Download gff for
BS06555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8057522..8058394 | 22..894 | 100 | | Minus |
BS06555.pep Sequence
Translation from 16 to 894
> BS06555.pep
MLALARNSWCGQLLCRVANIEARCPFSKSSSGGKQAEKKGKYRIVMVRHG
ESEWNQKNLFCGWFDAKLSEKGQQEACAAGKALKDAKIEFDVAHTSVLTR
AQETLRAALKSSEHKKIPVCTTWRLNERHYGGLTGLNKAETAKKFGEEKV
KIWRRSFDTPPPPMEKDHEYYACIVEDPRYKDQLKPEEFPKSESLKLTIE
RTLPYWNEVIVPQIKDGMRVLIAAHGNSLRGVVKHLECISDKDIMSLNLP
TGIPFVYELDESLKPLATLKFLGDPETVKKAMESVANQGKAK*
BS06555.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pglym87-PA | 292 | CG17645-PA | 1..292 | 1..292 | 1544 | 100 | Plus |
Pglym78-PC | 255 | CG1721-PC | 3..255 | 40..292 | 1042 | 75.9 | Plus |
Pglym78-PB | 255 | CG1721-PB | 3..255 | 40..292 | 1042 | 75.9 | Plus |
Pglym78-PA | 255 | CG1721-PA | 3..255 | 40..292 | 1042 | 75.9 | Plus |
CG7059-PC | 253 | CG7059-PC | 6..252 | 43..289 | 486 | 41 | Plus |