Clone Sequence Records
BS06563.3prime Sequence
744 bp (743 high quality bases) assembled on 2005-12-03
> BS06563.3prime
ATGGTCTAGAAAGCTTTTATTGATTTTCCGCCATGGGCACATCGATGGCA
ATGTCGCCAACGCCGGGCACGGGAATCGAGTACGAAACACTAGCCAAATC
GTCGGTATCATTGGCTAGATCCATGGGTGCATGGTGCTGCGGCGCCTGGT
CCACCTGTGGCGCGATTCCACCAAGATGTCCAGCCAACTCAGCGGACTGA
TCCACCTCCGGCGGCACTTCGACGGGCGCACTGCTAATGTGCGGATAACT
GGTGCGCGAGGCCGCCAAACGCAGCTCCTCCGGCACGCCCTTCATTCGCA
TCGCAATGTGACGGGAGTAAGGTGCCATCTTCTGGAAATAGTCAATCAGC
ATTTGCGGATCCTTCTCCACGATCTGTGCCGATGGCACCAAGTCGAACTC
GTCGCAGAACTGCCAGCGCACCAGATACTTGATGTCGCCCGTCACATCCG
TTGCGCCCACGATCTCGGCCAGCTCCAAGCCGCGCTCGTAGCCGCGCAGC
TTCTGGATCTCTTCGCACTTGGGTTTCTTCTCGCCGCGCTTCTTGGACTT
GGCGCGCGACTCCTCGAATTTCTGGATGAGATTCGGGCAATCGCAGTTCT
CCTCGGGCTCCCAGGTGTTGTCCGCCGACGTGTAGCCACGCCACTTGATG
TAGTACTCAACCTTGCCTTCGCTGGTAATGCGCTTGTCCATGATGCGCTC
CACCACGAAGTTGGGCTCGTTTTTAACCATGTCGACTGATAACT
BS06563.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6990-PA | 714 | HP1c-RA | 1..714 | 730..17 | 3570 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:31:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HP1c-RA | 986 | CG6990-RA | 98..811 | 730..17 | 3570 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:31:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22745717..22746430 | 730..17 | 3570 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 08:31:10 has no hits.
BS06563.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:45:08 Download gff for
BS06563.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP1c-PA | 1..714 | 17..730 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:25:33 Download gff for
BS06563.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6990-PA | 1..714 | 17..730 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:25:45 Download gff for
BS06563.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP1c-RA | 90..803 | 17..730 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:52:55 Download gff for
BS06563.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP1c-RA | 98..811 | 17..730 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:52:55 Download gff for
BS06563.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22745717..22746430 | 17..730 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:25:45 Download gff for
BS06563.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18571439..18572152 | 17..730 | 100 | | Minus |
BS06563.5prime Sequence
744 bp (717 high quality bases) assembled on 2005-12-03
> BS06563.5prime
GAAGTTATCAGTCGACATGGTTAAAAACGAGCCCAACTTCGTGGTGGAGC
GCATCATGGACAAGCGCATTACCAGCGAAGGCAAGGTTGAGTACTACATC
AAGTGGCGTGGCTACACGTCGGCGGACAACACCTGGGAGCCCGAGGAGAA
CTGCGATTGCCCGAATCTCATCCAGAAATTCGAGGAGTCGCGCGCCAAGT
CCAAGAAGCGCGGCGAGAAGAAACCCAAGTGCGAAGAGATCCAGAAGCTG
CGCGGCTACGAGCGCGGCTTGGAGCTGGCCGAGATCGTGGGCGCAACGGA
TGTGACGGGCGACATCAAGTATCTGGTGCGCTGGCAGTTCTGCGACGAGT
TCGACTTGGTGCCATCGGCACAGATCGTGGAGAAGGATCCGCAAATGCTG
ATTGACTATTTCCAGAAGATGGCACCTTACTCCCGTCACATTGCGATGCG
AATGAAGGGCGTGCCGGAGGAGCTGCGTTTGGCGGCCTCGCGCACCAGTT
ATCCGCACATTAGCAGTGCGCCCGTCGAAGTGCCGCCGGAGGTGGATCAG
TCCGCTGAGTTGGCTGGACATCTTGGTGGAATCGCGCCACAGGTGGACCA
GGCGCCGCAGCACCATGCACCCATGGATCTAGCCAATGATACCGACGATT
TGGCTAGTGTTTCGTACTCGATTCCCGTGCCCGGCGTTGGCGACATTGCC
ATCGATGTGCCCATGGCGGAAAATCAATAAAAGCTTTCTAGACC
BS06563.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6990-PA | 714 | HP1c-RA | 1..714 | 17..730 | 3570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:25:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HP1c-RA | 986 | CG6990-RA | 98..811 | 17..730 | 3570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:25:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22745717..22746430 | 17..730 | 3570 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:25:29 has no hits.
BS06563.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:45:09 Download gff for
BS06563.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP1c-PA | 1..714 | 17..730 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:25:34 Download gff for
BS06563.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6990-PA | 1..714 | 17..730 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:38:45 Download gff for
BS06563.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP1c-RA | 90..803 | 17..730 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:56 Download gff for
BS06563.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP1c-RA | 98..811 | 17..730 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:56 Download gff for
BS06563.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22745717..22746430 | 17..730 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:38:45 Download gff for
BS06563.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18571439..18572152 | 17..730 | 100 | | Plus |
BS06563.complete Sequence
746 bp (746 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635543
> BS06563.complete
GAAGTTATCAGTCGACATGGTTAAAAACGAGCCCAACTTCGTGGTGGAGC
GCATCATGGACAAGCGCATTACCAGCGAAGGCAAGGTTGAGTACTACATC
AAGTGGCGTGGCTACACGTCGGCGGACAACACCTGGGAGCCCGAGGAGAA
CTGCGATTGCCCGAATCTCATCCAGAAATTCGAGGAGTCGCGCGCCAAGT
CCAAGAAGCGCGGCGAGAAGAAACCCAAGTGCGAAGAGATCCAGAAGCTG
CGCGGCTACGAGCGCGGCTTGGAGCTGGCCGAGATCGTGGGCGCAACGGA
TGTGACGGGCGACATCAAGTATCTGGTGCGCTGGCAGTTCTGCGACGAGT
TCGACTTGGTGCCATCGGCACAGATCGTGGAGAAGGATCCGCAAATGCTG
ATTGACTATTTCCAGAAGATGGCACCTTACTCCCGTCACATTGCGATGCG
AATGAAGGGCGTGCCGGAGGAGCTGCGTTTGGCGGCCTCGCGCACCAGTT
ATCCGCACATTAGCAGTGCGCCCGTCGAAGTGCCGCCGGAGGTGGATCAG
TCCGCTGAGTTGGCTGGACATCTTGGTGGAATCGCGCCACAGGTGGACCA
GGCGCCGCAGCACCATGCACCCATGGATCTAGCCAATGATACCGACGATT
TGGCTAGTGTTTCGTACTCGATTCCCGTGCCCGGCGTTGGCGACATTGCC
ATCGATGTGCCCATGGCGGAAAATCAATAAAAGCTTTCTAGACCAT
BS06563.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:22:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HP1c-RA | 714 | CG6990-PA | 1..714 | 17..730 | 3570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:22:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HP1c-RA | 986 | CG6990-RA | 98..811 | 17..730 | 3570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:22:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22745717..22746430 | 17..730 | 3570 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:22:18 has no hits.
BS06563.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:03 Download gff for
BS06563.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP1c-RA | 1..714 | 17..730 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:41 Download gff for
BS06563.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP1c-RA | 90..803 | 17..730 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:02 Download gff for
BS06563.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP1c-RA | 90..801 | 17..728 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:03 Download gff for
BS06563.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP1c-RA | 90..803 | 17..730 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:56 Download gff for
BS06563.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP1c-RA | 98..809 | 17..728 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:56 Download gff for
BS06563.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22745717..22746428 | 17..728 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:02 Download gff for
BS06563.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18571439..18572150 | 17..728 | 100 | | Plus |
BS06563.pep Sequence
Translation from 16 to 729
> BS06563.pep
MVKNEPNFVVERIMDKRITSEGKVEYYIKWRGYTSADNTWEPEENCDCPN
LIQKFEESRAKSKKRGEKKPKCEEIQKLRGYERGLELAEIVGATDVTGDI
KYLVRWQFCDEFDLVPSAQIVEKDPQMLIDYFQKMAPYSRHIAMRMKGVP
EELRLAASRTSYPHISSAPVEVPPEVDQSAELAGHLGGIAPQVDQAPQHH
APMDLANDTDDLASVSYSIPVPGVGDIAIDVPMAENQ*
BS06563.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HP1c-PA | 237 | CG6990-PA | 1..237 | 1..237 | 1251 | 100 | Plus |
HP1b-PB | 240 | CG7041-PB | 4..148 | 8..134 | 302 | 41.8 | Plus |
HP1b-PC | 240 | CG7041-PC | 4..148 | 8..134 | 302 | 41.8 | Plus |
HP1b-PA | 240 | CG7041-PA | 4..148 | 8..134 | 302 | 41.8 | Plus |
Su(var)205-PB | 206 | CG8409-PB | 19..196 | 3..134 | 252 | 31.8 | Plus |