Clone BS06563 Report

Search the DGRC for BS06563

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:65
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptHP1c-RA
Protein status:BS06563.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06563.3prime Sequence

744 bp (743 high quality bases) assembled on 2005-12-03

> BS06563.3prime
ATGGTCTAGAAAGCTTTTATTGATTTTCCGCCATGGGCACATCGATGGCA
ATGTCGCCAACGCCGGGCACGGGAATCGAGTACGAAACACTAGCCAAATC
GTCGGTATCATTGGCTAGATCCATGGGTGCATGGTGCTGCGGCGCCTGGT
CCACCTGTGGCGCGATTCCACCAAGATGTCCAGCCAACTCAGCGGACTGA
TCCACCTCCGGCGGCACTTCGACGGGCGCACTGCTAATGTGCGGATAACT
GGTGCGCGAGGCCGCCAAACGCAGCTCCTCCGGCACGCCCTTCATTCGCA
TCGCAATGTGACGGGAGTAAGGTGCCATCTTCTGGAAATAGTCAATCAGC
ATTTGCGGATCCTTCTCCACGATCTGTGCCGATGGCACCAAGTCGAACTC
GTCGCAGAACTGCCAGCGCACCAGATACTTGATGTCGCCCGTCACATCCG
TTGCGCCCACGATCTCGGCCAGCTCCAAGCCGCGCTCGTAGCCGCGCAGC
TTCTGGATCTCTTCGCACTTGGGTTTCTTCTCGCCGCGCTTCTTGGACTT
GGCGCGCGACTCCTCGAATTTCTGGATGAGATTCGGGCAATCGCAGTTCT
CCTCGGGCTCCCAGGTGTTGTCCGCCGACGTGTAGCCACGCCACTTGATG
TAGTACTCAACCTTGCCTTCGCTGGTAATGCGCTTGTCCATGATGCGCTC
CACCACGAAGTTGGGCTCGTTTTTAACCATGTCGACTGATAACT

BS06563.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6990-PA 714 HP1c-RA 1..714 730..17 3570 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:31:13
Subject Length Description Subject Range Query Range Score Percent Strand
HP1c-RA 986 CG6990-RA 98..811 730..17 3570 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:31:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22745717..22746430 730..17 3570 100 Minus
Blast to na_te.dros performed on 2015-02-01 08:31:10 has no hits.

BS06563.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:45:08 Download gff for BS06563.3prime
Subject Subject Range Query Range Percent Splice Strand
HP1c-PA 1..714 17..730 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:25:33 Download gff for BS06563.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6990-PA 1..714 17..730 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:25:45 Download gff for BS06563.3prime
Subject Subject Range Query Range Percent Splice Strand
HP1c-RA 90..803 17..730 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:52:55 Download gff for BS06563.3prime
Subject Subject Range Query Range Percent Splice Strand
HP1c-RA 98..811 17..730 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:52:55 Download gff for BS06563.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22745717..22746430 17..730 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:25:45 Download gff for BS06563.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18571439..18572152 17..730 100   Minus

BS06563.5prime Sequence

744 bp (717 high quality bases) assembled on 2005-12-03

> BS06563.5prime
GAAGTTATCAGTCGACATGGTTAAAAACGAGCCCAACTTCGTGGTGGAGC
GCATCATGGACAAGCGCATTACCAGCGAAGGCAAGGTTGAGTACTACATC
AAGTGGCGTGGCTACACGTCGGCGGACAACACCTGGGAGCCCGAGGAGAA
CTGCGATTGCCCGAATCTCATCCAGAAATTCGAGGAGTCGCGCGCCAAGT
CCAAGAAGCGCGGCGAGAAGAAACCCAAGTGCGAAGAGATCCAGAAGCTG
CGCGGCTACGAGCGCGGCTTGGAGCTGGCCGAGATCGTGGGCGCAACGGA
TGTGACGGGCGACATCAAGTATCTGGTGCGCTGGCAGTTCTGCGACGAGT
TCGACTTGGTGCCATCGGCACAGATCGTGGAGAAGGATCCGCAAATGCTG
ATTGACTATTTCCAGAAGATGGCACCTTACTCCCGTCACATTGCGATGCG
AATGAAGGGCGTGCCGGAGGAGCTGCGTTTGGCGGCCTCGCGCACCAGTT
ATCCGCACATTAGCAGTGCGCCCGTCGAAGTGCCGCCGGAGGTGGATCAG
TCCGCTGAGTTGGCTGGACATCTTGGTGGAATCGCGCCACAGGTGGACCA
GGCGCCGCAGCACCATGCACCCATGGATCTAGCCAATGATACCGACGATT
TGGCTAGTGTTTCGTACTCGATTCCCGTGCCCGGCGTTGGCGACATTGCC
ATCGATGTGCCCATGGCGGAAAATCAATAAAAGCTTTCTAGACC

BS06563.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6990-PA 714 HP1c-RA 1..714 17..730 3570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:25:33
Subject Length Description Subject Range Query Range Score Percent Strand
HP1c-RA 986 CG6990-RA 98..811 17..730 3570 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:25:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22745717..22746430 17..730 3570 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:25:29 has no hits.

BS06563.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:45:09 Download gff for BS06563.5prime
Subject Subject Range Query Range Percent Splice Strand
HP1c-PA 1..714 17..730 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:25:34 Download gff for BS06563.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6990-PA 1..714 17..730 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:38:45 Download gff for BS06563.5prime
Subject Subject Range Query Range Percent Splice Strand
HP1c-RA 90..803 17..730 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:56 Download gff for BS06563.5prime
Subject Subject Range Query Range Percent Splice Strand
HP1c-RA 98..811 17..730 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:56 Download gff for BS06563.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22745717..22746430 17..730 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:38:45 Download gff for BS06563.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18571439..18572152 17..730 100   Plus

BS06563.complete Sequence

746 bp (746 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635543

> BS06563.complete
GAAGTTATCAGTCGACATGGTTAAAAACGAGCCCAACTTCGTGGTGGAGC
GCATCATGGACAAGCGCATTACCAGCGAAGGCAAGGTTGAGTACTACATC
AAGTGGCGTGGCTACACGTCGGCGGACAACACCTGGGAGCCCGAGGAGAA
CTGCGATTGCCCGAATCTCATCCAGAAATTCGAGGAGTCGCGCGCCAAGT
CCAAGAAGCGCGGCGAGAAGAAACCCAAGTGCGAAGAGATCCAGAAGCTG
CGCGGCTACGAGCGCGGCTTGGAGCTGGCCGAGATCGTGGGCGCAACGGA
TGTGACGGGCGACATCAAGTATCTGGTGCGCTGGCAGTTCTGCGACGAGT
TCGACTTGGTGCCATCGGCACAGATCGTGGAGAAGGATCCGCAAATGCTG
ATTGACTATTTCCAGAAGATGGCACCTTACTCCCGTCACATTGCGATGCG
AATGAAGGGCGTGCCGGAGGAGCTGCGTTTGGCGGCCTCGCGCACCAGTT
ATCCGCACATTAGCAGTGCGCCCGTCGAAGTGCCGCCGGAGGTGGATCAG
TCCGCTGAGTTGGCTGGACATCTTGGTGGAATCGCGCCACAGGTGGACCA
GGCGCCGCAGCACCATGCACCCATGGATCTAGCCAATGATACCGACGATT
TGGCTAGTGTTTCGTACTCGATTCCCGTGCCCGGCGTTGGCGACATTGCC
ATCGATGTGCCCATGGCGGAAAATCAATAAAAGCTTTCTAGACCAT

BS06563.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:22:19
Subject Length Description Subject Range Query Range Score Percent Strand
HP1c-RA 714 CG6990-PA 1..714 17..730 3570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:22:20
Subject Length Description Subject Range Query Range Score Percent Strand
HP1c-RA 986 CG6990-RA 98..811 17..730 3570 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:22:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22745717..22746430 17..730 3570 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:22:18 has no hits.

BS06563.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:03 Download gff for BS06563.complete
Subject Subject Range Query Range Percent Splice Strand
HP1c-RA 1..714 17..730 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:41 Download gff for BS06563.complete
Subject Subject Range Query Range Percent Splice Strand
HP1c-RA 90..803 17..730 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:02 Download gff for BS06563.complete
Subject Subject Range Query Range Percent Splice Strand
HP1c-RA 90..801 17..728 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:03 Download gff for BS06563.complete
Subject Subject Range Query Range Percent Splice Strand
HP1c-RA 90..803 17..730 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:56 Download gff for BS06563.complete
Subject Subject Range Query Range Percent Splice Strand
HP1c-RA 98..809 17..728 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:56 Download gff for BS06563.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22745717..22746428 17..728 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:02 Download gff for BS06563.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18571439..18572150 17..728 100   Plus

BS06563.pep Sequence

Translation from 16 to 729

> BS06563.pep
MVKNEPNFVVERIMDKRITSEGKVEYYIKWRGYTSADNTWEPEENCDCPN
LIQKFEESRAKSKKRGEKKPKCEEIQKLRGYERGLELAEIVGATDVTGDI
KYLVRWQFCDEFDLVPSAQIVEKDPQMLIDYFQKMAPYSRHIAMRMKGVP
EELRLAASRTSYPHISSAPVEVPPEVDQSAELAGHLGGIAPQVDQAPQHH
APMDLANDTDDLASVSYSIPVPGVGDIAIDVPMAENQ*

BS06563.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:42
Subject Length Description Subject Range Query Range Score Percent Strand
HP1c-PA 237 CG6990-PA 1..237 1..237 1251 100 Plus
HP1b-PB 240 CG7041-PB 4..148 8..134 302 41.8 Plus
HP1b-PC 240 CG7041-PC 4..148 8..134 302 41.8 Plus
HP1b-PA 240 CG7041-PA 4..148 8..134 302 41.8 Plus
Su(var)205-PB 206 CG8409-PB 19..196 3..134 252 31.8 Plus