Clone BS06564 Report

Search the DGRC for BS06564

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:65
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptTrip1-RA
Protein status:BS06564.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06564.3prime Sequence

957 bp (875 high quality bases) assembled on 2005-12-03

> BS06564.3prime
ATGGTCTAGAAAGCTTCTACTCGAAGATGTTCTCAAAGTATGTACTATCG
AATGTCTGGACACGCACGAAACCATCTTCTCCGCCCGAGGCGTAACTCTT
GCCGTCCGGATGGAAGGCCAAACTGTTGATGGGTCCGAAATGGCCCTTGA
GTCGGGCGAACTCCTCCTCGTATATCAGGTGGAAGAAGCGCGAGTCAAAC
TTGCCAGCCTTCGTAGACGTAGTGGTCACCTCCATGGCATCTTGACCGCC
GCCCAGCACGACATGATCCATGATTGGGCTGATGGCCGCCGAGTTTACTG
GACGCTCCGTTTTGTAGGTCTTGAGGCACATCAGGGACTCCGAATCGAAC
AATTTGGCGGTGGTGTCCTTGGAGGCGGTCACAAACATGGTGCCATCCTT
GCTCAACTGCATGTCGTTGATGCCAGCGCTGTGATCCGTGCCAGAGTCAA
CCACCTTTTGACCCTTACGGATGTCCCAGATGGCAATGTTGCCATTATCG
TGACCTGTGATGATGGTCTCATCCAGAGGACCCCACAACATCGACGTAAT
TTTGGACTCGGTCATCGGGATGCGGAGTGTGGGCTCCTGCTCCGACAACG
AGGAATCGGCGTTGCGGACATCGATGAGGAACAGTTCACAGCTCTGTCCC
ATCGCTTTGTCCGTTGAGTAGGCTGCCTGGTTGCCCGAGAAGCTGAAGTT
GCTGGTGCGCACCGATGACTTGGTCGGAATGGAGGCGATAACGGTGCCGT
ACTCGACGTCCCAGATCTTAGCGGTCATATCACCGGCGCCGGTGATGAGC
TTACGGCTCTCCCAGTCCACATCCAGGCACCAGACCGCACCCTGNTGACC
ATCGTAGGTGCCCAAACGTTCTCCGTTCAGCGAGTACCACACATTGGGCT
TCTGATCTTTGGAGCAGGAGAAGAGCAGGTCGCCCTCGCGGTTGTACTTG
ATTTGCG

BS06564.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG8882-PA 981 Trip1-RA 41..981 957..17 4661 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:22:36
Subject Length Description Subject Range Query Range Score Percent Strand
Trip1-RA 1177 CG8882-RA 123..1063 957..17 4679 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:22:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4966481..4966971 17..507 2455 100 Plus
2L 23513712 2L 4967022..4967476 503..957 2249 99.6 Plus
Blast to na_te.dros performed on 2015-02-09 01:22:31 has no hits.

BS06564.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:45:10 Download gff for BS06564.3prime
Subject Subject Range Query Range Percent Splice Strand
Trip1-PA 41..981 17..957 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:25:36 Download gff for BS06564.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8882-PA 41..981 17..957 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:54:02 Download gff for BS06564.3prime
Subject Subject Range Query Range Percent Splice Strand
Trip1-RA 123..1066 10..957 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:08:15 Download gff for BS06564.3prime
Subject Subject Range Query Range Percent Splice Strand
Trip1-RA 123..1066 10..957 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:08:15 Download gff for BS06564.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 4966478..4966968 10..504 99 <- Plus
2L 4967024..4967476 505..957 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:54:02 Download gff for BS06564.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4966478..4966968 10..504 99 <- Plus
arm_2L 4967024..4967476 505..957 99   Plus

BS06564.5prime Sequence

876 bp (800 high quality bases) assembled on 2005-12-03

> BS06564.5prime
GAAGTTATCAGTCGACATGCGTCCGTTGATGCTTCAGGGCCACGAGCGTT
CCATAACGCAAATCAAGTACAACCGCGAGGGCGACCTGCTCTTCTCCTGC
TCCAAGGATCAGAAGCCCAATGTGTGGTACTCGCTGAACGGAGAACGTTT
GGGCACCTACGATGGTCACCAGGGTGCGGTCTGGTGCCTGGATGTGGACT
GGGAGAGCCGTAAGCTCATCACCGGCGCCGGTGATATGACCGCTAAGATC
TGGGACGTCGAGTACGGCACCGTTATCGCCTCCATTCCGACCAAGTCATC
GGTGCGCACCAGCAACTTCAGCTTCTCGGGCAACCAGGCAGCCTACTCAA
CGGACAAAGCGATGGGACAGAGCTGTGAACTGTTCCTCATCGATGTCCGC
AACGCCGATTCCTCGTTGTCGGAGCAGGAGCCCACACTCCGCATCCCGAT
GACCGAGTCCAAAATTACGTCGATGTTGTGGGGTCCTCTGGATGAGACCA
TCATCACAGGTCACGATAATGGCAACATTGCCATCTGGGACATCCGTAAG
GGTCAAAAGGTGGTTGACTCTGGCACGGATCACAGCGCTGGCATCAACGA
CATGCAGTTGAGCAAGGATGGCACCATGTTTGTGACCGCCTCCAAGGACA
CCACCGCCAAATTGTTCGATTCGGAGTCCCTGATGTGCCTCAAGACCTAC
AAAACGGAGCGTCCAGTAAACTCGGCGGCCATCAGCCCAATCATGGATCA
TGTCGTGCTGGGCGGCGGTCAAGATGCCATGGAGGTGACCACTACGTCTA
CGAAGGCTGGCAAGTTTGACTCGCGCTTCTTCCACCTGATATACGAGGAG
GAGTTCGCCCGACTCAAGGGCCATTT

BS06564.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG8882-PA 981 Trip1-RA 1..860 17..876 4300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:30:46
Subject Length Description Subject Range Query Range Score Percent Strand
Trip1-RA 1177 CG8882-RA 83..942 17..876 4300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:30:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4967022..4967514 511..19 2465 100 Minus
2L 23513712 2L 4966602..4966971 876..507 1850 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:30:44 has no hits.

BS06564.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:45:11 Download gff for BS06564.5prime
Subject Subject Range Query Range Percent Splice Strand
Trip1-PA 1..860 17..876 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:25:37 Download gff for BS06564.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8882-PA 1..860 17..876 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:12:28 Download gff for BS06564.5prime
Subject Subject Range Query Range Percent Splice Strand
Trip1-RA 83..942 17..876 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:58:40 Download gff for BS06564.5prime
Subject Subject Range Query Range Percent Splice Strand
Trip1-RA 83..942 17..876 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:58:40 Download gff for BS06564.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4966602..4966968 510..876 100 <- Minus
2L 4967024..4967514 19..509 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:12:28 Download gff for BS06564.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4966602..4966968 510..876 100 <- Minus
arm_2L 4967024..4967514 19..509 100   Minus

BS06564.complete Sequence

1013 bp (1013 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635544

> BS06564.complete
GAAGTTATCAGTCGACATGCGTCCGTTGATGCTTCAGGGCCACGAGCGTT
CCATAACGCAAATCAAGTACAACCGCGAGGGCGACCTGCTCTTCTCCTGC
TCCAAGGATCAGAAGCCCAATGTGTGGTACTCGCTGAACGGAGAACGTTT
GGGCACCTACGATGGTCACCAGGGTGCGGTCTGGTGCCTGGATGTGGACT
GGGAGAGCCGTAAGCTCATCACCGGCGCCGGTGATATGACCGCTAAGATC
TGGGACGTCGAGTACGGCACCGTTATCGCCTCCATTCCGACCAAGTCATC
GGTGCGCACCAGCAACTTCAGCTTCTCGGGCAACCAGGCAGCCTACTCAA
CGGACAAAGCGATGGGACAGAGCTGTGAACTGTTCCTCATCGATGTCCGC
AACGCCGATTCCTCGTTGTCGGAGCAGGAGCCCACACTCCGCATCCCGAT
GACCGAGTCCAAAATTACGTCGATGTTGTGGGGTCCTCTGGATGAGACCA
TCATCACAGGTCACGATAATGGCAACATTGCCATCTGGGACATCCGTAAG
GGTCAAAAGGTGGTTGACTCTGGCACGGATCACAGCGCTGGCATCAACGA
CATGCAGTTGAGCAAGGATGGCACCATGTTTGTGACCGCCTCCAAGGACA
CCACCGCCAAATTGTTCGATTCGGAGTCCCTGATGTGCCTCAAGACCTAC
AAAACGGAGCGTCCAGTAAACTCGGCGGCCATCAGCCCAATCATGGATCA
TGTCGTGCTGGGCGGCGGTCAAGATGCCATGGAGGTGACCACTACGTCTA
CGAAGGCTGGCAAGTTTGACTCGCGCTTCTTCCACCTGATATACGAGGAG
GAGTTCGCCCGACTCAAGGGCCATTTCGGACCCATCAACAGTTTGGCCTT
CCATCCGGACGGCAAGAGTTACGCCTCGGGCGGAGAAGATGGTTTCGTGC
GTGTCCAGACATTCGATAGTACATACTTTGAGAACATCTTCGAGTAGAAG
CTTTCTAGACCAT

BS06564.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
Trip1-RA 981 CG8882-PA 1..981 17..997 4905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:14:08
Subject Length Description Subject Range Query Range Score Percent Strand
Trip1-RA 1177 CG8882-RA 83..1063 17..997 4905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:14:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4967022..4967514 511..19 2465 100 Minus
2L 23513712 2L 4966481..4966971 997..507 2455 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:14:06 has no hits.

BS06564.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:22 Download gff for BS06564.complete
Subject Subject Range Query Range Percent Splice Strand
Trip1-RA 1..981 17..997 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:38 Download gff for BS06564.complete
Subject Subject Range Query Range Percent Splice Strand
Trip1-RA 86..1069 17..1004 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:48:06 Download gff for BS06564.complete
Subject Subject Range Query Range Percent Splice Strand
Trip1-RA 83..1063 17..997 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:22 Download gff for BS06564.complete
Subject Subject Range Query Range Percent Splice Strand
Trip1-RA 86..1069 17..1004 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:47 Download gff for BS06564.complete
Subject Subject Range Query Range Percent Splice Strand
Trip1-RA 83..1063 17..997 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:47 Download gff for BS06564.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4966481..4966968 510..997 100 <- Minus
2L 4967024..4967515 17..509 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:48:06 Download gff for BS06564.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4966481..4966968 510..997 100 <- Minus
arm_2L 4967024..4967515 17..509 99   Minus

BS06564.pep Sequence

Translation from 16 to 996

> BS06564.pep
MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDG
HQGAVWCLDVDWESRKLITGAGDMTAKIWDVEYGTVIASIPTKSSVRTSN
FSFSGNQAAYSTDKAMGQSCELFLIDVRNADSSLSEQEPTLRIPMTESKI
TSMLWGPLDETIITGHDNGNIAIWDIRKGQKVVDSGTDHSAGINDMQLSK
DGTMFVTASKDTTAKLFDSESLMCLKTYKTERPVNSAAISPIMDHVVLGG
GQDAMEVTTTSTKAGKFDSRFFHLIYEEEFARLKGHFGPINSLAFHPDGK
SYASGGEDGFVRVQTFDSTYFENIFE*

BS06564.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:07
Subject Length Description Subject Range Query Range Score Percent Strand
Trip1-PA 326 CG8882-PA 1..326 1..326 1716 100 Plus
wmd-PB 328 CG3957-PB 10..304 3..320 290 29.3 Plus
wmd-PA 328 CG3957-PA 10..304 3..320 290 29.3 Plus
CG3436-PC 347 CG3436-PC 49..337 4..308 211 25.2 Plus
CG3436-PA 347 CG3436-PA 49..337 4..308 211 25.2 Plus