Clone Sequence Records
BS06564.3prime Sequence
957 bp (875 high quality bases) assembled on 2005-12-03
> BS06564.3prime
ATGGTCTAGAAAGCTTCTACTCGAAGATGTTCTCAAAGTATGTACTATCG
AATGTCTGGACACGCACGAAACCATCTTCTCCGCCCGAGGCGTAACTCTT
GCCGTCCGGATGGAAGGCCAAACTGTTGATGGGTCCGAAATGGCCCTTGA
GTCGGGCGAACTCCTCCTCGTATATCAGGTGGAAGAAGCGCGAGTCAAAC
TTGCCAGCCTTCGTAGACGTAGTGGTCACCTCCATGGCATCTTGACCGCC
GCCCAGCACGACATGATCCATGATTGGGCTGATGGCCGCCGAGTTTACTG
GACGCTCCGTTTTGTAGGTCTTGAGGCACATCAGGGACTCCGAATCGAAC
AATTTGGCGGTGGTGTCCTTGGAGGCGGTCACAAACATGGTGCCATCCTT
GCTCAACTGCATGTCGTTGATGCCAGCGCTGTGATCCGTGCCAGAGTCAA
CCACCTTTTGACCCTTACGGATGTCCCAGATGGCAATGTTGCCATTATCG
TGACCTGTGATGATGGTCTCATCCAGAGGACCCCACAACATCGACGTAAT
TTTGGACTCGGTCATCGGGATGCGGAGTGTGGGCTCCTGCTCCGACAACG
AGGAATCGGCGTTGCGGACATCGATGAGGAACAGTTCACAGCTCTGTCCC
ATCGCTTTGTCCGTTGAGTAGGCTGCCTGGTTGCCCGAGAAGCTGAAGTT
GCTGGTGCGCACCGATGACTTGGTCGGAATGGAGGCGATAACGGTGCCGT
ACTCGACGTCCCAGATCTTAGCGGTCATATCACCGGCGCCGGTGATGAGC
TTACGGCTCTCCCAGTCCACATCCAGGCACCAGACCGCACCCTGNTGACC
ATCGTAGGTGCCCAAACGTTCTCCGTTCAGCGAGTACCACACATTGGGCT
TCTGATCTTTGGAGCAGGAGAAGAGCAGGTCGCCCTCGCGGTTGTACTTG
ATTTGCG
BS06564.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8882-PA | 981 | Trip1-RA | 41..981 | 957..17 | 4661 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:22:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trip1-RA | 1177 | CG8882-RA | 123..1063 | 957..17 | 4679 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:22:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4966481..4966971 | 17..507 | 2455 | 100 | Plus |
2L | 23513712 | 2L | 4967022..4967476 | 503..957 | 2249 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-09 01:22:31 has no hits.
BS06564.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:45:10 Download gff for
BS06564.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trip1-PA | 41..981 | 17..957 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:25:36 Download gff for
BS06564.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8882-PA | 41..981 | 17..957 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:54:02 Download gff for
BS06564.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trip1-RA | 123..1066 | 10..957 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:08:15 Download gff for
BS06564.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trip1-RA | 123..1066 | 10..957 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:08:15 Download gff for
BS06564.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4966478..4966968 | 10..504 | 99 | <- | Plus |
2L | 4967024..4967476 | 505..957 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:54:02 Download gff for
BS06564.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4966478..4966968 | 10..504 | 99 | <- | Plus |
arm_2L | 4967024..4967476 | 505..957 | 99 | | Plus |
BS06564.5prime Sequence
876 bp (800 high quality bases) assembled on 2005-12-03
> BS06564.5prime
GAAGTTATCAGTCGACATGCGTCCGTTGATGCTTCAGGGCCACGAGCGTT
CCATAACGCAAATCAAGTACAACCGCGAGGGCGACCTGCTCTTCTCCTGC
TCCAAGGATCAGAAGCCCAATGTGTGGTACTCGCTGAACGGAGAACGTTT
GGGCACCTACGATGGTCACCAGGGTGCGGTCTGGTGCCTGGATGTGGACT
GGGAGAGCCGTAAGCTCATCACCGGCGCCGGTGATATGACCGCTAAGATC
TGGGACGTCGAGTACGGCACCGTTATCGCCTCCATTCCGACCAAGTCATC
GGTGCGCACCAGCAACTTCAGCTTCTCGGGCAACCAGGCAGCCTACTCAA
CGGACAAAGCGATGGGACAGAGCTGTGAACTGTTCCTCATCGATGTCCGC
AACGCCGATTCCTCGTTGTCGGAGCAGGAGCCCACACTCCGCATCCCGAT
GACCGAGTCCAAAATTACGTCGATGTTGTGGGGTCCTCTGGATGAGACCA
TCATCACAGGTCACGATAATGGCAACATTGCCATCTGGGACATCCGTAAG
GGTCAAAAGGTGGTTGACTCTGGCACGGATCACAGCGCTGGCATCAACGA
CATGCAGTTGAGCAAGGATGGCACCATGTTTGTGACCGCCTCCAAGGACA
CCACCGCCAAATTGTTCGATTCGGAGTCCCTGATGTGCCTCAAGACCTAC
AAAACGGAGCGTCCAGTAAACTCGGCGGCCATCAGCCCAATCATGGATCA
TGTCGTGCTGGGCGGCGGTCAAGATGCCATGGAGGTGACCACTACGTCTA
CGAAGGCTGGCAAGTTTGACTCGCGCTTCTTCCACCTGATATACGAGGAG
GAGTTCGCCCGACTCAAGGGCCATTT
BS06564.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8882-PA | 981 | Trip1-RA | 1..860 | 17..876 | 4300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:30:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trip1-RA | 1177 | CG8882-RA | 83..942 | 17..876 | 4300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:30:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4967022..4967514 | 511..19 | 2465 | 100 | Minus |
2L | 23513712 | 2L | 4966602..4966971 | 876..507 | 1850 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:30:44 has no hits.
BS06564.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:45:11 Download gff for
BS06564.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trip1-PA | 1..860 | 17..876 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:25:37 Download gff for
BS06564.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8882-PA | 1..860 | 17..876 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:12:28 Download gff for
BS06564.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trip1-RA | 83..942 | 17..876 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:58:40 Download gff for
BS06564.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trip1-RA | 83..942 | 17..876 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:58:40 Download gff for
BS06564.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4966602..4966968 | 510..876 | 100 | <- | Minus |
2L | 4967024..4967514 | 19..509 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:12:28 Download gff for
BS06564.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4966602..4966968 | 510..876 | 100 | <- | Minus |
arm_2L | 4967024..4967514 | 19..509 | 100 | | Minus |
BS06564.complete Sequence
1013 bp (1013 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635544
> BS06564.complete
GAAGTTATCAGTCGACATGCGTCCGTTGATGCTTCAGGGCCACGAGCGTT
CCATAACGCAAATCAAGTACAACCGCGAGGGCGACCTGCTCTTCTCCTGC
TCCAAGGATCAGAAGCCCAATGTGTGGTACTCGCTGAACGGAGAACGTTT
GGGCACCTACGATGGTCACCAGGGTGCGGTCTGGTGCCTGGATGTGGACT
GGGAGAGCCGTAAGCTCATCACCGGCGCCGGTGATATGACCGCTAAGATC
TGGGACGTCGAGTACGGCACCGTTATCGCCTCCATTCCGACCAAGTCATC
GGTGCGCACCAGCAACTTCAGCTTCTCGGGCAACCAGGCAGCCTACTCAA
CGGACAAAGCGATGGGACAGAGCTGTGAACTGTTCCTCATCGATGTCCGC
AACGCCGATTCCTCGTTGTCGGAGCAGGAGCCCACACTCCGCATCCCGAT
GACCGAGTCCAAAATTACGTCGATGTTGTGGGGTCCTCTGGATGAGACCA
TCATCACAGGTCACGATAATGGCAACATTGCCATCTGGGACATCCGTAAG
GGTCAAAAGGTGGTTGACTCTGGCACGGATCACAGCGCTGGCATCAACGA
CATGCAGTTGAGCAAGGATGGCACCATGTTTGTGACCGCCTCCAAGGACA
CCACCGCCAAATTGTTCGATTCGGAGTCCCTGATGTGCCTCAAGACCTAC
AAAACGGAGCGTCCAGTAAACTCGGCGGCCATCAGCCCAATCATGGATCA
TGTCGTGCTGGGCGGCGGTCAAGATGCCATGGAGGTGACCACTACGTCTA
CGAAGGCTGGCAAGTTTGACTCGCGCTTCTTCCACCTGATATACGAGGAG
GAGTTCGCCCGACTCAAGGGCCATTTCGGACCCATCAACAGTTTGGCCTT
CCATCCGGACGGCAAGAGTTACGCCTCGGGCGGAGAAGATGGTTTCGTGC
GTGTCCAGACATTCGATAGTACATACTTTGAGAACATCTTCGAGTAGAAG
CTTTCTAGACCAT
BS06564.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:14:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trip1-RA | 981 | CG8882-PA | 1..981 | 17..997 | 4905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:14:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trip1-RA | 1177 | CG8882-RA | 83..1063 | 17..997 | 4905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:14:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4967022..4967514 | 511..19 | 2465 | 100 | Minus |
2L | 23513712 | 2L | 4966481..4966971 | 997..507 | 2455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:14:06 has no hits.
BS06564.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:22 Download gff for
BS06564.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trip1-RA | 1..981 | 17..997 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:38 Download gff for
BS06564.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trip1-RA | 86..1069 | 17..1004 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:48:06 Download gff for
BS06564.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trip1-RA | 83..1063 | 17..997 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:22 Download gff for
BS06564.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trip1-RA | 86..1069 | 17..1004 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:47 Download gff for
BS06564.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trip1-RA | 83..1063 | 17..997 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:47 Download gff for
BS06564.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4966481..4966968 | 510..997 | 100 | <- | Minus |
2L | 4967024..4967515 | 17..509 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:48:06 Download gff for
BS06564.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4966481..4966968 | 510..997 | 100 | <- | Minus |
arm_2L | 4967024..4967515 | 17..509 | 99 | | Minus |
BS06564.pep Sequence
Translation from 16 to 996
> BS06564.pep
MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDG
HQGAVWCLDVDWESRKLITGAGDMTAKIWDVEYGTVIASIPTKSSVRTSN
FSFSGNQAAYSTDKAMGQSCELFLIDVRNADSSLSEQEPTLRIPMTESKI
TSMLWGPLDETIITGHDNGNIAIWDIRKGQKVVDSGTDHSAGINDMQLSK
DGTMFVTASKDTTAKLFDSESLMCLKTYKTERPVNSAAISPIMDHVVLGG
GQDAMEVTTTSTKAGKFDSRFFHLIYEEEFARLKGHFGPINSLAFHPDGK
SYASGGEDGFVRVQTFDSTYFENIFE*
BS06564.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trip1-PA | 326 | CG8882-PA | 1..326 | 1..326 | 1716 | 100 | Plus |
wmd-PB | 328 | CG3957-PB | 10..304 | 3..320 | 290 | 29.3 | Plus |
wmd-PA | 328 | CG3957-PA | 10..304 | 3..320 | 290 | 29.3 | Plus |
CG3436-PC | 347 | CG3436-PC | 49..337 | 4..308 | 211 | 25.2 | Plus |
CG3436-PA | 347 | CG3436-PA | 49..337 | 4..308 | 211 | 25.2 | Plus |