Clone BS06569 Report

Search the DGRC for BS06569

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:65
Well:69
Vector:pDNR-Dual
Associated Gene/Transcript140up-RA
Protein status:BS06569.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06569.3prime Sequence

817 bp (816 high quality bases) assembled on 2005-12-03

> BS06569.3prime
ATGGTCTAGAAAGCTTTCACTTGATCGTGTCCAGCGATACATGTTCGGAT
GTTTTCTCGTCGTGGGCCTTGAAAAGCTCTGGGTTTTCGTCCTCTGTCAG
TTTTTTGAACGCCTGTTGAATGTTTTCGTCGCGATCGAGTCGCCATTTGT
ACTGCCAGTAGCGAACCTCTTCCATCGAGGTCCCTGATGCTTTCATCAGC
AGCAGCGACGTCACACCAGCCACGCCGCCCAAGAAACCTCCAATGATTCC
ACCTGCCGCCATGCCCCGCAGACCAAGACTCACTTTGTAAAGCGAGCCGG
TGATGGAACCAGCGGCCAAGTATTCGTAGATTGAGGATTTTCCACGGTAC
ACCGACATACAAGTGATGATGCCGAAGTAGGATGTGGTAAAAAGTCCCAC
TCGCCAGCCCCATTTGAAGCCGCCTTTGGCAAAGTTGACTGTGAATTGAT
CTTGCAGCTTTTTCTTGGCATCAAAGTGCGATTTAAATGCTGTGGCCTGG
TTGTTCTCCATGAAATTCATGTAGGCCACGCGCGATTGTGTAACTCCGCC
GTAAATAGCTCCAATAAGGAATCCTAGGAAGCCGGCCTGGTAAACCGAGT
TAAGCTCGGAGGATATGCTGCCAAACTCGTCGATTGTAAACATTTGCTTG
AGGCGCTCCAGTCCTGTTTCCTCTGGTGGTTTACTGGCCAGAAAGGCCTT
GTATGTTTTGTTTTCCTTATCGACTATTTCATCTGCGGCGCCTTCGAATG
TTGGCAGGATGCCTGCGATCAGAAAACCGGCGTCCTTTCCACAGAAAATT
CATGTCGACTGATAACT

BS06569.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG9852-PA 786 140up-RA 28..786 775..17 3795 100 Minus
CG9852-PA 786 140up-RA 1..30 803..774 150 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:54:16
Subject Length Description Subject Range Query Range Score Percent Strand
140up-RB 1200 CG9852-RB 73..858 803..17 3910 99.9 Minus
140up-RA 937 CG9852-RA 73..858 803..17 3910 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:54:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14124505..14124862 17..374 1790 100 Plus
3R 32079331 3R 14125075..14125240 464..629 830 100 Plus
3R 32079331 3R 14125304..14125476 630..803 820 99.4 Plus
3R 32079331 3R 14124925..14125015 375..465 455 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:54:13 has no hits.

BS06569.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:45:20 Download gff for BS06569.3prime
Subject Subject Range Query Range Percent Splice Strand
140up-PA 1..786 17..803 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:25:50 Download gff for BS06569.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9852-PA 1..786 17..803 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:43:08 Download gff for BS06569.3prime
Subject Subject Range Query Range Percent Splice Strand
140up-RA 73..858 17..803 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:33 Download gff for BS06569.3prime
Subject Subject Range Query Range Percent Splice Strand
140up-RA 73..858 17..803 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:33 Download gff for BS06569.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 14124505..14124862 17..374 100 <- Plus
3R 14124925..14125013 375..463 100 <- Plus
3R 14125075..14125240 464..629 100 <- Plus
3R 14125304..14125476 630..803 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:43:08 Download gff for BS06569.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9950227..9950584 17..374 100 <- Plus
arm_3R 9950647..9950735 375..463 100 <- Plus
arm_3R 9950797..9950962 464..629 100 <- Plus
arm_3R 9951026..9951198 630..803 99   Plus

BS06569.5prime Sequence

816 bp (746 high quality bases) assembled on 2005-12-03

> BS06569.5prime
GAAGTTATCAGTCGACATGAATTTTCTGTGGAAAGGACGCCGGTTTCTGA
TCGCAGGCATCCTGCCAACATTCGAAGGCGCCGCAGATGAAATAGTCGAT
AAGGAAAACAAAACATACAAGGCCTTTCTGGCCAGTAAACCACCAGAGGA
AACAGGACTGGAGCGCCTCAAGCAAATGTTTACAATCGACGAGTTTGGCA
GCATATCCTCCGAGCTTAACTCGGTTTACCAGGCCGGCTTCCTAGGATTC
CTTATTGGAGCTATTTACGGCGGAGTTACACAATCGCGCGTGGCCTACAT
GAATTTCATGGAGAACAACCAGGCCACAGCATTTAAATCGCACTTTGATG
CCAAGAAAAAGCTGCAAGATCAATTCACAGTCAACTTTGCCAAAGGCGGC
TTCAAATGGGGCTGGCGAGTGGGACTTTTTACCACATCCTACTTCGGCAT
CATCACTTGTATGTCGGTGTACCGTGGAAAATCCTCAATCTACGAATACT
TGGCCGCTGGTTCCATCACCGGCTCGCTTTACAAAGTGAGTCTTGGTCTG
CGGGGCATGGCGGCAGGTGGAATCATTGGAGGTTTCTTGGGCGGCGTGGC
TGGTGTGACGTCGCTGCTGCTGATGAAAGCATCAGGGACCTCGATGGAAG
AGGTTCGCTACTGGCAGTACAAATGGCGACTCGATCGCGACGAAAACATT
CAACAGGCGTTCAAAAAACTGACAGAGGACGAAAACCCAGAGCTTTTCAA
GGCCCACGACGAGAAAACATCCGAACATGTATCGCTGGACACGATCAAGT
GAAAGCTTTCTAGACC

BS06569.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG9852-PA 786 140up-RA 1..786 17..802 3930 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:34:43
Subject Length Description Subject Range Query Range Score Percent Strand
140up-RB 1200 CG9852-RB 73..858 17..802 3930 100 Plus
140up-RA 937 CG9852-RA 73..858 17..802 3930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:34:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14124505..14124862 802..445 1790 100 Minus
3R 32079331 3R 14125304..14125476 189..17 865 100 Minus
3R 32079331 3R 14125075..14125240 355..190 830 100 Minus
3R 32079331 3R 14124925..14125015 444..354 455 100 Minus
Blast to na_te.dros performed on 2015-02-04 02:34:40 has no hits.

BS06569.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:45:21 Download gff for BS06569.5prime
Subject Subject Range Query Range Percent Splice Strand
140up-PA 1..786 17..802 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:25:52 Download gff for BS06569.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9852-PA 1..786 17..802 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:51:54 Download gff for BS06569.5prime
Subject Subject Range Query Range Percent Splice Strand
140up-RA 73..858 17..802 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:37:41 Download gff for BS06569.5prime
Subject Subject Range Query Range Percent Splice Strand
140up-RA 73..858 17..802 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:37:41 Download gff for BS06569.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14124505..14124862 445..802 100 <- Minus
3R 14124925..14125013 356..444 100 <- Minus
3R 14125075..14125240 190..355 100 <- Minus
3R 14125304..14125476 17..189 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:51:54 Download gff for BS06569.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9950227..9950584 445..802 100 <- Minus
arm_3R 9950647..9950735 356..444 100 <- Minus
arm_3R 9950797..9950962 190..355 100 <- Minus
arm_3R 9951026..9951198 17..189 100   Minus

BS06569.complete Sequence

818 bp (818 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635545

> BS06569.complete
GAAGTTATCAGTCGACATGAATTTTCTGTGGAAAGGACGCCGGTTTCTGA
TCGCAGGCATCCTGCCAACATTCGAAGGCGCCGCAGATGAAATAGTCGAT
AAGGAAAACAAAACATACAAGGCCTTTCTGGCCAGTAAACCACCAGAGGA
AACAGGACTGGAGCGCCTCAAGCAAATGTTTACAATCGACGAGTTTGGCA
GCATATCCTCCGAGCTTAACTCGGTTTACCAGGCCGGCTTCCTAGGATTC
CTTATTGGAGCTATTTACGGCGGAGTTACACAATCGCGCGTGGCCTACAT
GAATTTCATGGAGAACAACCAGGCCACAGCATTTAAATCGCACTTTGATG
CCAAGAAAAAGCTGCAAGATCAATTCACAGTCAACTTTGCCAAAGGCGGC
TTCAAATGGGGCTGGCGAGTGGGACTTTTTACCACATCCTACTTCGGCAT
CATCACTTGTATGTCGGTGTACCGTGGAAAATCCTCAATCTACGAATACT
TGGCCGCTGGTTCCATCACCGGCTCGCTTTACAAAGTGAGTCTTGGTCTG
CGGGGCATGGCGGCAGGTGGAATCATTGGAGGTTTCTTGGGCGGCGTGGC
TGGTGTGACGTCGCTGCTGCTGATGAAAGCATCAGGGACCTCGATGGAAG
AGGTTCGCTACTGGCAGTACAAATGGCGACTCGATCGCGACGAAAACATT
CAACAGGCGTTCAAAAAACTGACAGAGGACGAAAACCCAGAGCTTTTCAA
GGCCCACGACGAGAAAACATCCGAACATGTATCGCTGGACACGATCAAGT
GAAAGCTTTCTAGACCAT

BS06569.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:36:03
Subject Length Description Subject Range Query Range Score Percent Strand
140up-RB 786 CG9852-PB 1..786 17..802 3930 100 Plus
140up-RA 786 CG9852-PA 1..786 17..802 3930 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
140up-RB 1200 CG9852-RB 73..858 17..802 3930 100 Plus
140up-RA 937 CG9852-RA 73..858 17..802 3930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:36:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14124505..14124862 802..445 1790 100 Minus
3R 32079331 3R 14125304..14125476 189..17 865 100 Minus
3R 32079331 3R 14125075..14125240 355..190 830 100 Minus
3R 32079331 3R 14124925..14125015 444..354 455 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:36:01 has no hits.

BS06569.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:23 Download gff for BS06569.complete
Subject Subject Range Query Range Percent Splice Strand
140up-RA 1..786 17..802 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:40 Download gff for BS06569.complete
Subject Subject Range Query Range Percent Splice Strand
140up-RA 55..840 17..802 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:00 Download gff for BS06569.complete
Subject Subject Range Query Range Percent Splice Strand
140up-RA 73..857 17..801 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:23 Download gff for BS06569.complete
Subject Subject Range Query Range Percent Splice Strand
140up-RA 55..840 17..802 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:01:23 Download gff for BS06569.complete
Subject Subject Range Query Range Percent Splice Strand
140up-RA 73..857 17..801 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:01:23 Download gff for BS06569.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14124506..14124862 445..801 100 <- Minus
3R 14124925..14125013 356..444 100 <- Minus
3R 14125075..14125240 190..355 100 <- Minus
3R 14125304..14125476 17..189 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:00 Download gff for BS06569.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9950228..9950584 445..801 100 <- Minus
arm_3R 9950647..9950735 356..444 100 <- Minus
arm_3R 9950797..9950962 190..355 100 <- Minus
arm_3R 9951026..9951198 17..189 100   Minus

BS06569.pep Sequence

Translation from 16 to 801

> BS06569.pep
MNFLWKGRRFLIAGILPTFEGAADEIVDKENKTYKAFLASKPPEETGLER
LKQMFTIDEFGSISSELNSVYQAGFLGFLIGAIYGGVTQSRVAYMNFMEN
NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS
VYRGKSSIYEYLAAGSITGSLYKVSLGLRGMAAGGIIGGFLGGVAGVTSL
LLMKASGTSMEEVRYWQYKWRLDRDENIQQAFKKLTEDENPELFKAHDEK
TSEHVSLDTIK*

BS06569.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:00
Subject Length Description Subject Range Query Range Score Percent Strand
140up-PB 261 CG9852-PB 1..261 1..261 1355 100 Plus
140up-PA 261 CG9852-PA 1..261 1..261 1355 100 Plus