Clone Sequence Records
BS06569.3prime Sequence
817 bp (816 high quality bases) assembled on 2005-12-03
> BS06569.3prime
ATGGTCTAGAAAGCTTTCACTTGATCGTGTCCAGCGATACATGTTCGGAT
GTTTTCTCGTCGTGGGCCTTGAAAAGCTCTGGGTTTTCGTCCTCTGTCAG
TTTTTTGAACGCCTGTTGAATGTTTTCGTCGCGATCGAGTCGCCATTTGT
ACTGCCAGTAGCGAACCTCTTCCATCGAGGTCCCTGATGCTTTCATCAGC
AGCAGCGACGTCACACCAGCCACGCCGCCCAAGAAACCTCCAATGATTCC
ACCTGCCGCCATGCCCCGCAGACCAAGACTCACTTTGTAAAGCGAGCCGG
TGATGGAACCAGCGGCCAAGTATTCGTAGATTGAGGATTTTCCACGGTAC
ACCGACATACAAGTGATGATGCCGAAGTAGGATGTGGTAAAAAGTCCCAC
TCGCCAGCCCCATTTGAAGCCGCCTTTGGCAAAGTTGACTGTGAATTGAT
CTTGCAGCTTTTTCTTGGCATCAAAGTGCGATTTAAATGCTGTGGCCTGG
TTGTTCTCCATGAAATTCATGTAGGCCACGCGCGATTGTGTAACTCCGCC
GTAAATAGCTCCAATAAGGAATCCTAGGAAGCCGGCCTGGTAAACCGAGT
TAAGCTCGGAGGATATGCTGCCAAACTCGTCGATTGTAAACATTTGCTTG
AGGCGCTCCAGTCCTGTTTCCTCTGGTGGTTTACTGGCCAGAAAGGCCTT
GTATGTTTTGTTTTCCTTATCGACTATTTCATCTGCGGCGCCTTCGAATG
TTGGCAGGATGCCTGCGATCAGAAAACCGGCGTCCTTTCCACAGAAAATT
CATGTCGACTGATAACT
BS06569.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9852-PA | 786 | 140up-RA | 28..786 | 775..17 | 3795 | 100 | Minus |
CG9852-PA | 786 | 140up-RA | 1..30 | 803..774 | 150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:54:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
140up-RB | 1200 | CG9852-RB | 73..858 | 803..17 | 3910 | 99.9 | Minus |
140up-RA | 937 | CG9852-RA | 73..858 | 803..17 | 3910 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:54:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14124505..14124862 | 17..374 | 1790 | 100 | Plus |
3R | 32079331 | 3R | 14125075..14125240 | 464..629 | 830 | 100 | Plus |
3R | 32079331 | 3R | 14125304..14125476 | 630..803 | 820 | 99.4 | Plus |
3R | 32079331 | 3R | 14124925..14125015 | 375..465 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:54:13 has no hits.
BS06569.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:45:20 Download gff for
BS06569.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
140up-PA | 1..786 | 17..803 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:25:50 Download gff for
BS06569.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9852-PA | 1..786 | 17..803 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:43:08 Download gff for
BS06569.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
140up-RA | 73..858 | 17..803 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:33 Download gff for
BS06569.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
140up-RA | 73..858 | 17..803 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:33 Download gff for
BS06569.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14124505..14124862 | 17..374 | 100 | <- | Plus |
3R | 14124925..14125013 | 375..463 | 100 | <- | Plus |
3R | 14125075..14125240 | 464..629 | 100 | <- | Plus |
3R | 14125304..14125476 | 630..803 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:43:08 Download gff for
BS06569.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9950227..9950584 | 17..374 | 100 | <- | Plus |
arm_3R | 9950647..9950735 | 375..463 | 100 | <- | Plus |
arm_3R | 9950797..9950962 | 464..629 | 100 | <- | Plus |
arm_3R | 9951026..9951198 | 630..803 | 99 | | Plus |
BS06569.5prime Sequence
816 bp (746 high quality bases) assembled on 2005-12-03
> BS06569.5prime
GAAGTTATCAGTCGACATGAATTTTCTGTGGAAAGGACGCCGGTTTCTGA
TCGCAGGCATCCTGCCAACATTCGAAGGCGCCGCAGATGAAATAGTCGAT
AAGGAAAACAAAACATACAAGGCCTTTCTGGCCAGTAAACCACCAGAGGA
AACAGGACTGGAGCGCCTCAAGCAAATGTTTACAATCGACGAGTTTGGCA
GCATATCCTCCGAGCTTAACTCGGTTTACCAGGCCGGCTTCCTAGGATTC
CTTATTGGAGCTATTTACGGCGGAGTTACACAATCGCGCGTGGCCTACAT
GAATTTCATGGAGAACAACCAGGCCACAGCATTTAAATCGCACTTTGATG
CCAAGAAAAAGCTGCAAGATCAATTCACAGTCAACTTTGCCAAAGGCGGC
TTCAAATGGGGCTGGCGAGTGGGACTTTTTACCACATCCTACTTCGGCAT
CATCACTTGTATGTCGGTGTACCGTGGAAAATCCTCAATCTACGAATACT
TGGCCGCTGGTTCCATCACCGGCTCGCTTTACAAAGTGAGTCTTGGTCTG
CGGGGCATGGCGGCAGGTGGAATCATTGGAGGTTTCTTGGGCGGCGTGGC
TGGTGTGACGTCGCTGCTGCTGATGAAAGCATCAGGGACCTCGATGGAAG
AGGTTCGCTACTGGCAGTACAAATGGCGACTCGATCGCGACGAAAACATT
CAACAGGCGTTCAAAAAACTGACAGAGGACGAAAACCCAGAGCTTTTCAA
GGCCCACGACGAGAAAACATCCGAACATGTATCGCTGGACACGATCAAGT
GAAAGCTTTCTAGACC
BS06569.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9852-PA | 786 | 140up-RA | 1..786 | 17..802 | 3930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:34:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
140up-RB | 1200 | CG9852-RB | 73..858 | 17..802 | 3930 | 100 | Plus |
140up-RA | 937 | CG9852-RA | 73..858 | 17..802 | 3930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:34:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14124505..14124862 | 802..445 | 1790 | 100 | Minus |
3R | 32079331 | 3R | 14125304..14125476 | 189..17 | 865 | 100 | Minus |
3R | 32079331 | 3R | 14125075..14125240 | 355..190 | 830 | 100 | Minus |
3R | 32079331 | 3R | 14124925..14125015 | 444..354 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:34:40 has no hits.
BS06569.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:45:21 Download gff for
BS06569.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
140up-PA | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:25:52 Download gff for
BS06569.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9852-PA | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:51:54 Download gff for
BS06569.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
140up-RA | 73..858 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:37:41 Download gff for
BS06569.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
140up-RA | 73..858 | 17..802 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:37:41 Download gff for
BS06569.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14124505..14124862 | 445..802 | 100 | <- | Minus |
3R | 14124925..14125013 | 356..444 | 100 | <- | Minus |
3R | 14125075..14125240 | 190..355 | 100 | <- | Minus |
3R | 14125304..14125476 | 17..189 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:51:54 Download gff for
BS06569.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9950227..9950584 | 445..802 | 100 | <- | Minus |
arm_3R | 9950647..9950735 | 356..444 | 100 | <- | Minus |
arm_3R | 9950797..9950962 | 190..355 | 100 | <- | Minus |
arm_3R | 9951026..9951198 | 17..189 | 100 | | Minus |
BS06569.complete Sequence
818 bp (818 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635545
> BS06569.complete
GAAGTTATCAGTCGACATGAATTTTCTGTGGAAAGGACGCCGGTTTCTGA
TCGCAGGCATCCTGCCAACATTCGAAGGCGCCGCAGATGAAATAGTCGAT
AAGGAAAACAAAACATACAAGGCCTTTCTGGCCAGTAAACCACCAGAGGA
AACAGGACTGGAGCGCCTCAAGCAAATGTTTACAATCGACGAGTTTGGCA
GCATATCCTCCGAGCTTAACTCGGTTTACCAGGCCGGCTTCCTAGGATTC
CTTATTGGAGCTATTTACGGCGGAGTTACACAATCGCGCGTGGCCTACAT
GAATTTCATGGAGAACAACCAGGCCACAGCATTTAAATCGCACTTTGATG
CCAAGAAAAAGCTGCAAGATCAATTCACAGTCAACTTTGCCAAAGGCGGC
TTCAAATGGGGCTGGCGAGTGGGACTTTTTACCACATCCTACTTCGGCAT
CATCACTTGTATGTCGGTGTACCGTGGAAAATCCTCAATCTACGAATACT
TGGCCGCTGGTTCCATCACCGGCTCGCTTTACAAAGTGAGTCTTGGTCTG
CGGGGCATGGCGGCAGGTGGAATCATTGGAGGTTTCTTGGGCGGCGTGGC
TGGTGTGACGTCGCTGCTGCTGATGAAAGCATCAGGGACCTCGATGGAAG
AGGTTCGCTACTGGCAGTACAAATGGCGACTCGATCGCGACGAAAACATT
CAACAGGCGTTCAAAAAACTGACAGAGGACGAAAACCCAGAGCTTTTCAA
GGCCCACGACGAGAAAACATCCGAACATGTATCGCTGGACACGATCAAGT
GAAAGCTTTCTAGACCAT
BS06569.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:36:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
140up-RB | 786 | CG9852-PB | 1..786 | 17..802 | 3930 | 100 | Plus |
140up-RA | 786 | CG9852-PA | 1..786 | 17..802 | 3930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:36:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
140up-RB | 1200 | CG9852-RB | 73..858 | 17..802 | 3930 | 100 | Plus |
140up-RA | 937 | CG9852-RA | 73..858 | 17..802 | 3930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:36:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14124505..14124862 | 802..445 | 1790 | 100 | Minus |
3R | 32079331 | 3R | 14125304..14125476 | 189..17 | 865 | 100 | Minus |
3R | 32079331 | 3R | 14125075..14125240 | 355..190 | 830 | 100 | Minus |
3R | 32079331 | 3R | 14124925..14125015 | 444..354 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:36:01 has no hits.
BS06569.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:23 Download gff for
BS06569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
140up-RA | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:40 Download gff for
BS06569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
140up-RA | 55..840 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:00 Download gff for
BS06569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
140up-RA | 73..857 | 17..801 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:23 Download gff for
BS06569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
140up-RA | 55..840 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:01:23 Download gff for
BS06569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
140up-RA | 73..857 | 17..801 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:01:23 Download gff for
BS06569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14124506..14124862 | 445..801 | 100 | <- | Minus |
3R | 14124925..14125013 | 356..444 | 100 | <- | Minus |
3R | 14125075..14125240 | 190..355 | 100 | <- | Minus |
3R | 14125304..14125476 | 17..189 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:00 Download gff for
BS06569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9950228..9950584 | 445..801 | 100 | <- | Minus |
arm_3R | 9950647..9950735 | 356..444 | 100 | <- | Minus |
arm_3R | 9950797..9950962 | 190..355 | 100 | <- | Minus |
arm_3R | 9951026..9951198 | 17..189 | 100 | | Minus |
BS06569.pep Sequence
Translation from 16 to 801
> BS06569.pep
MNFLWKGRRFLIAGILPTFEGAADEIVDKENKTYKAFLASKPPEETGLER
LKQMFTIDEFGSISSELNSVYQAGFLGFLIGAIYGGVTQSRVAYMNFMEN
NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS
VYRGKSSIYEYLAAGSITGSLYKVSLGLRGMAAGGIIGGFLGGVAGVTSL
LLMKASGTSMEEVRYWQYKWRLDRDENIQQAFKKLTEDENPELFKAHDEK
TSEHVSLDTIK*
BS06569.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
140up-PB | 261 | CG9852-PB | 1..261 | 1..261 | 1355 | 100 | Plus |
140up-PA | 261 | CG9852-PA | 1..261 | 1..261 | 1355 | 100 | Plus |