Clone BS06570 Report

Search the DGRC for BS06570

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:65
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG10795-RA
Protein status:BS06570.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06570.3prime Sequence

567 bp (566 high quality bases) assembled on 2005-12-03

> BS06570.3prime
ATGGTCTAGAAAGCTTTCACCAGTCGTCCCTGGGCAGCCGGTACGTGGTG
TTGTCGCTGCGCACGATGTGGATGCCGGCTCCGTAGTAGGGTATCACATA
GGCGGAGCCATCCGCCGGACCCACAACCTGCAGGGCTATCAGCACGATGT
CAATCAGCTGGCCCAGGAACATGCCGCCGAGGGTGCAGAACTTGAGGAGT
CCGATGCCCGGATAGCCCAAATAGAATCTATCCACGCCGAACATGCCCAG
AAAGACAGAGAGTAGCAGTGTGGTGTCCAGGTGATAGCCATTCGTCCACT
TGCAGGGCACTTCTCGGGTGAACGTGGCATTGCCAGTCTCCGTGCAGTTG
ATCTCGTTGGCGGCGATGCACCAGACGCGGGCGCGACCCTCCCTGGTGCA
TCCGGCCAGCTGCTGTGTCTTGGGATCGATTTGACCCCTCGCCGGGTCGG
GGCACATGAACTGGCCCATCATCTGGAGCTCGTTGCAGTCCACATTGATC
TGGTGGGTTTCCTTGGCGAAGAAGAAGAGAAGGAGCAGCAGCACTGGGAA
CATGTCGACTGATAACT

BS06570.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG10795-PA 537 CG10795-RA 1..537 553..17 2685 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG10795-RA 1100 CG10795-RA 229..766 554..17 2690 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 14:52:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21383561..21383837 17..293 1385 100 Plus
2R 25286936 2R 21383902..21384163 293..554 1310 100 Plus
Blast to na_te.dros performed on 2015-01-30 14:52:06 has no hits.

BS06570.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:45:22 Download gff for BS06570.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10795-PA 1..537 17..553 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:25:53 Download gff for BS06570.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10795-PA 1..537 17..553 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:07:15 Download gff for BS06570.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10795-RA 225..771 11..561 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:37:44 Download gff for BS06570.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10795-RA 225..771 11..561 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:37:44 Download gff for BS06570.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21383556..21383837 11..293 98 <- Plus
2R 21383903..21384167 294..561 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:07:15 Download gff for BS06570.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17271061..17271342 11..293 98 <- Plus
arm_2R 17271408..17271672 294..561 98   Plus

BS06570.5prime Sequence

567 bp (566 high quality bases) assembled on 2005-12-03

> BS06570.5prime
GAAGTTATCAGTCGACATGTTCCCAGTGCTGCTGCTCCTTCTCTTCTTCT
TCGCCAAGGAAACCCACCAGATCAATGTGGACTGCAACGAGCTCCAGATG
ATGGGCCAGTTCATGTGCCCCGACCCGGCGAGGGGTCAAATCGATCCCAA
GACACAGCAGCTGGCCGGATGCACCAGGGAGGGTCGCGCCCGCGTCTGGT
GCATCGCCGCCAACGAGATCAACTGCACGGAGACTGGCAATGCCACGTTC
ACCCGAGAAGTGCCCTGCAAGTGGACGAATGGCTATCACCTGGACACCAC
ACTGCTACTCTCTGTCTTTCTGGGCATGTTCGGCGTGGATAGATTCTATT
TGGGCTATCCGGGCATCGGACTCCTCAAGTTCTGCACCCTCGGCGGCATG
TTCCTGGGCCAGCTGATTGACATCGTGCTGATAGCCCTGCAGGTTGTGGG
TCCGGCGGATGGCTCCGCCTATGTGATACCCTACTACGGAGCCGGCATCC
ACATCGTGCGCAGCGACAACACCACGTACCGGCTGCCCAGGGACGACTGG
TGAAAGCTTTCTAGACC

BS06570.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG10795-PA 537 CG10795-RA 1..537 17..553 2685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:43:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG10795-RA 1100 CG10795-RA 229..766 16..553 2690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:43:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21383561..21383837 553..277 1385 100 Minus
2R 25286936 2R 21383902..21384163 277..16 1310 100 Minus
Blast to na_te.dros performed on 2015-02-11 21:43:31 has no hits.

BS06570.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:45:23 Download gff for BS06570.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10795-PA 1..537 17..553 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:25:55 Download gff for BS06570.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10795-PA 1..537 17..553 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 20:27:35 Download gff for BS06570.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10795-RA 225..771 9..559 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:39:41 Download gff for BS06570.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10795-RA 225..771 9..559 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:39:41 Download gff for BS06570.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21383556..21383837 277..559 98 <- Minus
2R 21383903..21384167 9..276 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 20:27:35 Download gff for BS06570.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17271061..17271342 277..559 98 <- Minus
arm_2R 17271408..17271672 9..276 98   Minus

BS06570.complete Sequence

569 bp (569 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635546

> BS06570.complete
GAAGTTATCAGTCGACATGTTCCCAGTGCTGCTGCTCCTTCTCTTCTTCT
TCGCCAAGGAAACCCACCAGATCAATGTGGACTGCAACGAGCTCCAGATG
ATGGGCCAGTTCATGTGCCCCGACCCGGCGAGGGGTCAAATCGATCCCAA
GACACAGCAGCTGGCCGGATGCACCAGGGAGGGTCGCGCCCGCGTCTGGT
GCATCGCCGCCAACGAGATCAACTGCACGGAGACTGGCAATGCCACGTTC
ACCCGAGAAGTGCCCTGCAAGTGGACGAATGGCTATCACCTGGACACCAC
ACTGCTACTCTCTGTCTTTCTGGGCATGTTCGGCGTGGATAGATTCTATT
TGGGCTATCCGGGCATCGGACTCCTCAAGTTCTGCACCCTCGGCGGCATG
TTCCTGGGCCAGCTGATTGACATCGTGCTGATAGCCCTGCAGGTTGTGGG
TCCGGCGGATGGCTCCGCCTATGTGATACCCTACTACGGAGCCGGCATCC
ACATCGTGCGCAGCGACAACACCACGTACCGGCTGCCCAGGGACGACTGG
TGAAAGCTTTCTAGACCAT

BS06570.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG10795-RA 537 CG10795-PA 1..537 17..553 2685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG10795-RA 1100 CG10795-RA 229..766 16..553 2690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21383561..21383837 553..277 1385 100 Minus
2R 25286936 2R 21383902..21384163 277..16 1310 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:51:36 has no hits.

BS06570.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:24 Download gff for BS06570.complete
Subject Subject Range Query Range Percent Splice Strand
CG10795-RA 1..537 17..553 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:41 Download gff for BS06570.complete
Subject Subject Range Query Range Percent Splice Strand
CG10795-RA 175..721 9..559 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:51 Download gff for BS06570.complete
Subject Subject Range Query Range Percent Splice Strand
CG10795-RA 235..765 22..552 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:24 Download gff for BS06570.complete
Subject Subject Range Query Range Percent Splice Strand
CG10795-RA 175..721 9..559 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:30 Download gff for BS06570.complete
Subject Subject Range Query Range Percent Splice Strand
CG10795-RA 235..765 22..552 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:30 Download gff for BS06570.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21383903..21384157 22..276 100   Minus
2R 21383562..21383837 277..552 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:51 Download gff for BS06570.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17271067..17271342 277..552 100 <- Minus
arm_2R 17271408..17271662 22..276 100   Minus

BS06570.pep Sequence

Translation from 16 to 552

> BS06570.pep
MFPVLLLLLFFFAKETHQINVDCNELQMMGQFMCPDPARGQIDPKTQQLA
GCTREGRARVWCIAANEINCTETGNATFTREVPCKWTNGYHLDTTLLLSV
FLGMFGVDRFYLGYPGIGLLKFCTLGGMFLGQLIDIVLIALQVVGPADGS
AYVIPYYGAGIHIVRSDNTTYRLPRDDW*

BS06570.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG10795-PA 178 CG10795-PA 1..178 1..178 966 100 Plus
amx-PB 284 CG12127-PB 192..284 59..153 218 44.2 Plus
amx-PA 284 CG12127-PA 192..284 59..153 218 44.2 Plus
CG11103-PB 172 CG11103-PB 41..166 34..150 173 35.9 Plus