Clone Sequence Records
BS06570.3prime Sequence
567 bp (566 high quality bases) assembled on 2005-12-03
> BS06570.3prime
ATGGTCTAGAAAGCTTTCACCAGTCGTCCCTGGGCAGCCGGTACGTGGTG
TTGTCGCTGCGCACGATGTGGATGCCGGCTCCGTAGTAGGGTATCACATA
GGCGGAGCCATCCGCCGGACCCACAACCTGCAGGGCTATCAGCACGATGT
CAATCAGCTGGCCCAGGAACATGCCGCCGAGGGTGCAGAACTTGAGGAGT
CCGATGCCCGGATAGCCCAAATAGAATCTATCCACGCCGAACATGCCCAG
AAAGACAGAGAGTAGCAGTGTGGTGTCCAGGTGATAGCCATTCGTCCACT
TGCAGGGCACTTCTCGGGTGAACGTGGCATTGCCAGTCTCCGTGCAGTTG
ATCTCGTTGGCGGCGATGCACCAGACGCGGGCGCGACCCTCCCTGGTGCA
TCCGGCCAGCTGCTGTGTCTTGGGATCGATTTGACCCCTCGCCGGGTCGG
GGCACATGAACTGGCCCATCATCTGGAGCTCGTTGCAGTCCACATTGATC
TGGTGGGTTTCCTTGGCGAAGAAGAAGAGAAGGAGCAGCAGCACTGGGAA
CATGTCGACTGATAACT
BS06570.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10795-PA | 537 | CG10795-RA | 1..537 | 553..17 | 2685 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:52:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10795-RA | 1100 | CG10795-RA | 229..766 | 554..17 | 2690 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 14:52:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21383561..21383837 | 17..293 | 1385 | 100 | Plus |
2R | 25286936 | 2R | 21383902..21384163 | 293..554 | 1310 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 14:52:06 has no hits.
BS06570.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:45:22 Download gff for
BS06570.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10795-PA | 1..537 | 17..553 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:25:53 Download gff for
BS06570.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10795-PA | 1..537 | 17..553 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:07:15 Download gff for
BS06570.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10795-RA | 225..771 | 11..561 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:37:44 Download gff for
BS06570.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10795-RA | 225..771 | 11..561 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:37:44 Download gff for
BS06570.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21383556..21383837 | 11..293 | 98 | <- | Plus |
2R | 21383903..21384167 | 294..561 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:07:15 Download gff for
BS06570.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17271061..17271342 | 11..293 | 98 | <- | Plus |
arm_2R | 17271408..17271672 | 294..561 | 98 | | Plus |
BS06570.5prime Sequence
567 bp (566 high quality bases) assembled on 2005-12-03
> BS06570.5prime
GAAGTTATCAGTCGACATGTTCCCAGTGCTGCTGCTCCTTCTCTTCTTCT
TCGCCAAGGAAACCCACCAGATCAATGTGGACTGCAACGAGCTCCAGATG
ATGGGCCAGTTCATGTGCCCCGACCCGGCGAGGGGTCAAATCGATCCCAA
GACACAGCAGCTGGCCGGATGCACCAGGGAGGGTCGCGCCCGCGTCTGGT
GCATCGCCGCCAACGAGATCAACTGCACGGAGACTGGCAATGCCACGTTC
ACCCGAGAAGTGCCCTGCAAGTGGACGAATGGCTATCACCTGGACACCAC
ACTGCTACTCTCTGTCTTTCTGGGCATGTTCGGCGTGGATAGATTCTATT
TGGGCTATCCGGGCATCGGACTCCTCAAGTTCTGCACCCTCGGCGGCATG
TTCCTGGGCCAGCTGATTGACATCGTGCTGATAGCCCTGCAGGTTGTGGG
TCCGGCGGATGGCTCCGCCTATGTGATACCCTACTACGGAGCCGGCATCC
ACATCGTGCGCAGCGACAACACCACGTACCGGCTGCCCAGGGACGACTGG
TGAAAGCTTTCTAGACC
BS06570.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10795-PA | 537 | CG10795-RA | 1..537 | 17..553 | 2685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:43:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10795-RA | 1100 | CG10795-RA | 229..766 | 16..553 | 2690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:43:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21383561..21383837 | 553..277 | 1385 | 100 | Minus |
2R | 25286936 | 2R | 21383902..21384163 | 277..16 | 1310 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 21:43:31 has no hits.
BS06570.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:45:23 Download gff for
BS06570.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10795-PA | 1..537 | 17..553 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:25:55 Download gff for
BS06570.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10795-PA | 1..537 | 17..553 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 20:27:35 Download gff for
BS06570.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10795-RA | 225..771 | 9..559 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:39:41 Download gff for
BS06570.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10795-RA | 225..771 | 9..559 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:39:41 Download gff for
BS06570.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21383556..21383837 | 277..559 | 98 | <- | Minus |
2R | 21383903..21384167 | 9..276 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 20:27:35 Download gff for
BS06570.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17271061..17271342 | 277..559 | 98 | <- | Minus |
arm_2R | 17271408..17271672 | 9..276 | 98 | | Minus |
BS06570.complete Sequence
569 bp (569 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635546
> BS06570.complete
GAAGTTATCAGTCGACATGTTCCCAGTGCTGCTGCTCCTTCTCTTCTTCT
TCGCCAAGGAAACCCACCAGATCAATGTGGACTGCAACGAGCTCCAGATG
ATGGGCCAGTTCATGTGCCCCGACCCGGCGAGGGGTCAAATCGATCCCAA
GACACAGCAGCTGGCCGGATGCACCAGGGAGGGTCGCGCCCGCGTCTGGT
GCATCGCCGCCAACGAGATCAACTGCACGGAGACTGGCAATGCCACGTTC
ACCCGAGAAGTGCCCTGCAAGTGGACGAATGGCTATCACCTGGACACCAC
ACTGCTACTCTCTGTCTTTCTGGGCATGTTCGGCGTGGATAGATTCTATT
TGGGCTATCCGGGCATCGGACTCCTCAAGTTCTGCACCCTCGGCGGCATG
TTCCTGGGCCAGCTGATTGACATCGTGCTGATAGCCCTGCAGGTTGTGGG
TCCGGCGGATGGCTCCGCCTATGTGATACCCTACTACGGAGCCGGCATCC
ACATCGTGCGCAGCGACAACACCACGTACCGGCTGCCCAGGGACGACTGG
TGAAAGCTTTCTAGACCAT
BS06570.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:51:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10795-RA | 537 | CG10795-PA | 1..537 | 17..553 | 2685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:51:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10795-RA | 1100 | CG10795-RA | 229..766 | 16..553 | 2690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:51:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21383561..21383837 | 553..277 | 1385 | 100 | Minus |
2R | 25286936 | 2R | 21383902..21384163 | 277..16 | 1310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:51:36 has no hits.
BS06570.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:24 Download gff for
BS06570.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10795-RA | 1..537 | 17..553 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:41 Download gff for
BS06570.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10795-RA | 175..721 | 9..559 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:51 Download gff for
BS06570.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10795-RA | 235..765 | 22..552 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:24 Download gff for
BS06570.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10795-RA | 175..721 | 9..559 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:30 Download gff for
BS06570.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10795-RA | 235..765 | 22..552 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:30 Download gff for
BS06570.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21383903..21384157 | 22..276 | 100 | | Minus |
2R | 21383562..21383837 | 277..552 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:51 Download gff for
BS06570.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17271067..17271342 | 277..552 | 100 | <- | Minus |
arm_2R | 17271408..17271662 | 22..276 | 100 | | Minus |
BS06570.pep Sequence
Translation from 16 to 552
> BS06570.pep
MFPVLLLLLFFFAKETHQINVDCNELQMMGQFMCPDPARGQIDPKTQQLA
GCTREGRARVWCIAANEINCTETGNATFTREVPCKWTNGYHLDTTLLLSV
FLGMFGVDRFYLGYPGIGLLKFCTLGGMFLGQLIDIVLIALQVVGPADGS
AYVIPYYGAGIHIVRSDNTTYRLPRDDW*
BS06570.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10795-PA | 178 | CG10795-PA | 1..178 | 1..178 | 966 | 100 | Plus |
amx-PB | 284 | CG12127-PB | 192..284 | 59..153 | 218 | 44.2 | Plus |
amx-PA | 284 | CG12127-PA | 192..284 | 59..153 | 218 | 44.2 | Plus |
CG11103-PB | 172 | CG11103-PB | 41..166 | 34..150 | 173 | 35.9 | Plus |