Clone Sequence Records
BS06573.3prime Sequence
408 bp (407 high quality bases) assembled on 2005-12-03
> BS06573.3prime
ATGGTCTAGAAAGCTTCTATTTGGCGGCCGGAGCAGATCCTTCGCTCTGC
TGAGAGTCATTAAACTGTTTGTGCCACTCGAGATTCATCTTTGTGACGGA
TTCTCCTTTCTTGGCGGCCTGCTTGCCACTGTACACCATAATGGCGCATC
CCACGGCGGTGAGTGCGATCATTATGTTGGCCAGGCGGATGCGCATTTTG
TTGCGGCAGCGCTCCATGACATCCTGACTAACGAAATTGGGAATCTCGGA
CTGCGACTTGTATTTGCCGGTCCAAACCAACATACGGCGCTCCAGATTGT
TTGGCTCGTGGTTCTTGATCGTCTCTCGCAACATCTGACTGGTGCCGAAG
GATCTACGCACCAAGGCGCCAATTAACCCCGTTTTGCTTAGCATGTCGAC
TGATAACT
BS06573.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9231-PA | 378 | CG9231-RA | 1..378 | 394..17 | 1890 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:54:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9231-RB | 847 | CG9231-RB | 89..468 | 394..15 | 1900 | 100 | Minus |
| CG9231-RA | 814 | CG9231-RA | 56..435 | 394..15 | 1900 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:54:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19585472..19585686 | 15..229 | 1075 | 100 | Plus |
| 3L | 28110227 | 3L | 19585749..19585915 | 228..394 | 835 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:54:04 has no hits.
BS06573.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:45:28 Download gff for
BS06573.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9231-PA | 1..378 | 17..394 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:26:01 Download gff for
BS06573.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9231-PA | 1..378 | 17..394 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:43:06 Download gff for
BS06573.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9231-RA | 49..442 | 8..401 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:30 Download gff for
BS06573.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9231-RA | 49..442 | 8..401 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:30 Download gff for
BS06573.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19585465..19585684 | 8..227 | 98 | <- | Plus |
| 3L | 19585749..19585922 | 228..401 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:43:06 Download gff for
BS06573.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19578565..19578784 | 8..227 | 98 | <- | Plus |
| arm_3L | 19578849..19579022 | 228..401 | 98 | | Plus |
BS06573.5prime Sequence
408 bp (407 high quality bases) assembled on 2005-12-03
> BS06573.5prime
GAAGTTATCAGTCGACATGCTAAGCAAAACGGGGTTAATTGGCGCCTTGG
TGCGTAGATCCTTCGGCACCAGTCAGATGTTGCGAGAGACGATCAAGAAC
CACGAGCCAAACAATCTGGAGCGCCGTATGTTGGTTTGGACCGGCAAATA
CAAGTCGCAGTCCGAGATTCCCAATTTCGTTAGTCAGGATGTCATGGAGC
GCTGCCGCAACAAAATGCGCATCCGCCTGGCCAACATAATGATCGCACTC
ACCGCCGTGGGATGCGCCATTATGGTGTACAGTGGCAAGCAGGCCGCCAA
GAAAGGAGAATCCGTCACAAAGATGAATCTCGAGTGGCACAAACAGTTTA
ATGACTCTCAGCAGAGCGAAGGATCTGCTCCGGCCGCCAAATAGAAGCTT
TCTAGACC
BS06573.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9231-PA | 378 | CG9231-RA | 1..378 | 17..394 | 1890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:10:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9231-RB | 847 | CG9231-RB | 89..468 | 17..396 | 1900 | 100 | Plus |
| CG9231-RA | 814 | CG9231-RA | 56..435 | 17..396 | 1900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 01:10:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19585472..19585686 | 396..182 | 1075 | 100 | Minus |
| 3L | 28110227 | 3L | 19585749..19585915 | 183..17 | 835 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 01:10:38 has no hits.
BS06573.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:45:29 Download gff for
BS06573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9231-PA | 1..378 | 17..394 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:26:02 Download gff for
BS06573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9231-PA | 1..378 | 17..394 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 15:10:57 Download gff for
BS06573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9231-RA | 49..442 | 10..403 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:29:25 Download gff for
BS06573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9231-RA | 49..442 | 10..403 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:29:25 Download gff for
BS06573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19585465..19585684 | 184..403 | 98 | <- | Minus |
| 3L | 19585749..19585922 | 10..183 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 15:10:57 Download gff for
BS06573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19578565..19578784 | 184..403 | 98 | <- | Minus |
| arm_3L | 19578849..19579022 | 10..183 | 98 | | Minus |
BS06573.complete Sequence
410 bp (410 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635547
> BS06573.complete
GAAGTTATCAGTCGACATGCTAAGCAAAACGGGGTTAATTGGCGCCTTGG
TGCGTAGATCCTTCGGCACCAGTCAGATGTTGCGAGAGACGATCAAGAAC
CACGAGCCAAACAATCTGGAGCGCCGTATGTTGGTTTGGACCGGCAAATA
CAAGTCGCAGTCCGAGATTCCCAATTTCGTTAGTCAGGATGTCATGGAGC
GCTGCCGCAACAAAATGCGCATCCGCCTGGCCAACATAATGATCGCACTC
ACCGCCGTGGGATGCGCCATTATGGTGTACAGTGGCAAGCAGGCCGCCAA
GAAAGGAGAATCCGTCACAAAGATGAATCTCGAGTGGCACAAACAGTTTA
ATGACTCTCAGCAGAGCGAAGGATCTGCTCCGGCCGCCAAATAGAAGCTT
TCTAGACCAT
BS06573.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:20:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9231-RB | 378 | CG9231-PB | 1..378 | 17..394 | 1890 | 100 | Plus |
| CG9231-RA | 378 | CG9231-PA | 1..378 | 17..394 | 1890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:20:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9231-RB | 847 | CG9231-RB | 89..468 | 17..396 | 1900 | 100 | Plus |
| CG9231-RA | 814 | CG9231-RA | 56..435 | 17..396 | 1900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:20:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19585472..19585686 | 396..182 | 1075 | 100 | Minus |
| 3L | 28110227 | 3L | 19585749..19585915 | 183..17 | 835 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:20:26 has no hits.
BS06573.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:36 Download gff for
BS06573.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9231-RA | 1..378 | 17..394 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:53:30 Download gff for
BS06573.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9231-RA | 307..700 | 10..403 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:22:41 Download gff for
BS06573.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9231-RA | 56..427 | 17..388 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:36 Download gff for
BS06573.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9231-RA | 307..700 | 10..403 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:10 Download gff for
BS06573.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9231-RA | 56..427 | 17..388 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:10 Download gff for
BS06573.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19585480..19585684 | 184..388 | 100 | <- | Minus |
| 3L | 19585749..19585915 | 17..183 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:22:41 Download gff for
BS06573.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19578580..19578784 | 184..388 | 100 | <- | Minus |
| arm_3L | 19578849..19579015 | 17..183 | 100 | | Minus |
BS06573.pep Sequence
Translation from 16 to 393
> BS06573.pep
MLSKTGLIGALVRRSFGTSQMLRETIKNHEPNNLERRMLVWTGKYKSQSE
IPNFVSQDVMERCRNKMRIRLANIMIALTAVGCAIMVYSGKQAAKKGESV
TKMNLEWHKQFNDSQQSEGSAPAAK*
BS06573.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9231-PB | 125 | CG9231-PB | 1..125 | 1..125 | 638 | 100 | Plus |
| CG9231-PA | 125 | CG9231-PA | 1..125 | 1..125 | 638 | 100 | Plus |
