Clone Sequence Records
BS06578.3prime Sequence
618 bp (617 high quality bases) assembled on 2005-12-03
> BS06578.3prime
ATGGTCTAGAAAGCTTCTAGGAGCGACTGCGACTACGAGACGCGGCTGGG
GCCAGTCCTCCAGATCCGCTTCCGATTCCATTGCGGCTGTCGCCGCGTAC
TGGACTGCGTGAAAATTTGGATCGGCGTTCCGGCGAGTGGCTACCAGGCG
AGCGGGAACGGGAGTATGATCGGCGACGCGGACTGCGCGAACGACGGCGC
ATTGGGGAGCGAGAACGTGACCGACGACGCCCGCCGGAACCACCGCCTCC
TCCTCCGCCACGACGACCACTGGAGCTGCGAGTGGGCGAAGAGGGGCGTC
CGTAGCGGGCCATCTGTACGCGGAGCTCCCTGCCGTCTAGCATGCGACCA
TCCATGGCCTCCAGTGCGTCCTCGGCATCACGTTTGTCATAGAAGCGAAC
AAATGCGAATCCGCGGCTCTCACGTGTGTAGCGATCCCTGGGTATGTAGA
TGTCCCCCACCTCGCCGCACCGCTCGAAGACCCGACGCAGATCCTCCGGC
GTGGTGCGATATGTGAGATTGTCGACCTTAAGCGAGACCATTCCATCGAT
CCGTGGAGGTGGACGCGCTGCGCCCAATCCCCCGGCACCACCACCGTTGC
TCATGTCGACTGATAACT
BS06578.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5442-PB | 588 | SC35-RB | 1..588 | 604..17 | 2940 | 100 | Minus |
CG5442-PA | 339 | SC35-RA | 1..339 | 355..17 | 1695 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:51:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SC35-RD | 1880 | CG5442-RD | 127..715 | 604..16 | 2945 | 100 | Minus |
SC35-RC | 1441 | CG5442-RC | 127..715 | 604..16 | 2945 | 100 | Minus |
SC35-RB | 1077 | CG5442-RB | 127..715 | 604..16 | 2945 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:51:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12432344..12432732 | 16..404 | 1915 | 99.5 | Plus |
2L | 23513712 | 2L | 12433579..12433711 | 396..528 | 665 | 100 | Plus |
2L | 23513712 | 2L | 12433834..12433912 | 526..604 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:51:49 has no hits.
BS06578.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:45:39 Download gff for
BS06578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SC35-PB | 1..588 | 17..604 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:26:16 Download gff for
BS06578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5442-PB | 1..588 | 17..604 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:42:44 Download gff for
BS06578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SC35-RB | 120..719 | 9..614 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:03 Download gff for
BS06578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SC35-RB | 120..719 | 9..614 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:03 Download gff for
BS06578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12432340..12432723 | 9..395 | 98 | <- | Plus |
2L | 12433579..12433709 | 396..526 | 100 | <- | Plus |
2L | 12433835..12433919 | 527..614 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:42:44 Download gff for
BS06578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12432340..12432723 | 9..395 | 98 | <- | Plus |
arm_2L | 12433579..12433709 | 396..526 | 100 | <- | Plus |
arm_2L | 12433835..12433919 | 527..614 | 95 | | Plus |
BS06578.5prime Sequence
618 bp (617 high quality bases) assembled on 2005-12-03
> BS06578.5prime
GAAGTTATCAGTCGACATGAGCAACGGTGGTGGTGCCGGGGGATTGGGCG
CAGCGCGTCCACCTCCACGGATCGATGGAATGGTCTCGCTTAAGGTCGAC
AATCTCACATATCGCACCACGCCGGAGGATCTGCGTCGGGTCTTCGAGCG
GTGCGGCGAGGTGGGGGACATCTACATACCCAGGGATCGCTACACACGTG
AGAGCCGCGGATTCGCATTTGTTCGCTTCTATGACAAACGTGATGCCGAG
GACGCACTGGAGGCCATGGATGGTCGCATGCTAGACGGCAGGGAGCTCCG
CGTACAGATGGCCCGCTACGGACGCCCCTCTTCGCCCACTCGCAGCTCCA
GTGGTCGTCGTGGCGGAGGAGGAGGCGGTGGTTCCGGCGGGCGTCGTCGG
TCACGTTCTCGCTCCCCAATGCGCCGTCGTTCGCGCAGTCCGCGTCGCCG
ATCATACTCCCGTTCCCGCTCGCCTGGTAGCCACTCGCCGGAACGCCGAT
CCAAATTTTCACGCAGTCCAGTACGCGGCGACAGCCGCAATGGAATCGGA
AGCGGATCTGGAGGACTGGCCCCAGCCGCGTCTCGTAGTCGCAGTCGCTC
CTAGAAGCTTTCTAGACC
BS06578.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5442-PB | 588 | SC35-RB | 1..588 | 17..604 | 2940 | 100 | Plus |
CG5442-PA | 339 | SC35-RA | 1..339 | 266..604 | 1695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:05:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SC35-RD | 1880 | CG5442-RD | 127..715 | 17..605 | 2945 | 100 | Plus |
SC35-RC | 1441 | CG5442-RC | 127..715 | 17..605 | 2945 | 100 | Plus |
SC35-RB | 1077 | CG5442-RB | 127..715 | 17..605 | 2945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:05:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12432344..12432732 | 605..217 | 1915 | 99.5 | Minus |
2L | 23513712 | 2L | 12433579..12433711 | 225..93 | 665 | 100 | Minus |
2L | 23513712 | 2L | 12433834..12433912 | 95..17 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:05:27 has no hits.
BS06578.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:45:40 Download gff for
BS06578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SC35-PB | 1..588 | 17..604 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:26:18 Download gff for
BS06578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5442-PB | 1..588 | 17..604 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:31:04 Download gff for
BS06578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SC35-RB | 120..719 | 7..612 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:02:25 Download gff for
BS06578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SC35-RB | 120..719 | 7..612 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:02:25 Download gff for
BS06578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12432340..12432723 | 226..612 | 98 | <- | Minus |
2L | 12433579..12433709 | 95..225 | 100 | <- | Minus |
2L | 12433835..12433919 | 7..94 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:31:04 Download gff for
BS06578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12432340..12432723 | 226..612 | 98 | <- | Minus |
arm_2L | 12433579..12433709 | 95..225 | 100 | <- | Minus |
arm_2L | 12433835..12433919 | 7..94 | 95 | | Minus |
BS06578.complete Sequence
620 bp (620 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635548
> BS06578.complete
GAAGTTATCAGTCGACATGAGCAACGGTGGTGGTGCCGGGGGATTGGGCG
CAGCGCGTCCACCTCCACGGATCGATGGAATGGTCTCGCTTAAGGTCGAC
AATCTCACATATCGCACCACGCCGGAGGATCTGCGTCGGGTCTTCGAGCG
GTGCGGCGAGGTGGGGGACATCTACATACCCAGGGATCGCTACACACGTG
AGAGCCGCGGATTCGCATTTGTTCGCTTCTATGACAAACGTGATGCCGAG
GACGCACTGGAGGCCATGGATGGTCGCATGCTAGACGGCAGGGAGCTCCG
CGTACAGATGGCCCGCTACGGACGCCCCTCTTCGCCCACTCGCAGCTCCA
GTGGTCGTCGTGGCGGAGGAGGAGGCGGTGGTTCCGGCGGGCGTCGTCGG
TCACGTTCTCGCTCCCCAATGCGCCGTCGTTCGCGCAGTCCGCGTCGCCG
ATCATACTCCCGTTCCCGCTCGCCTGGTAGCCACTCGCCGGAACGCCGAT
CCAAATTTTCACGCAGTCCAGTACGCGGCGACAGCCGCAATGGAATCGGA
AGCGGATCTGGAGGACTGGCCCCAGCCGCGTCTCGTAGTCGCAGTCGCTC
CTAGAAGCTTTCTAGACCAT
BS06578.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:34:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SC35-RD | 588 | CG5442-PD | 1..588 | 17..604 | 2940 | 100 | Plus |
SC35-RC | 588 | CG5442-PC | 1..588 | 17..604 | 2940 | 100 | Plus |
SC35-RB | 588 | CG5442-PB | 1..588 | 17..604 | 2940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:34:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SC35-RD | 1880 | CG5442-RD | 127..715 | 17..605 | 2945 | 100 | Plus |
SC35-RC | 1441 | CG5442-RC | 127..715 | 17..605 | 2945 | 100 | Plus |
SC35-RB | 1077 | CG5442-RB | 127..715 | 17..605 | 2945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:34:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12432344..12432732 | 605..217 | 1915 | 99.5 | Minus |
2L | 23513712 | 2L | 12433579..12433711 | 225..93 | 665 | 100 | Minus |
2L | 23513712 | 2L | 12433834..12433912 | 95..17 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:34:19 has no hits.
BS06578.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:25 Download gff for
BS06578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SC35-RB | 1..588 | 17..604 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:43 Download gff for
BS06578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SC35-RB | 127..726 | 7..612 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:41 Download gff for
BS06578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SC35-RB | 127..714 | 17..604 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:26 Download gff for
BS06578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SC35-RB | 127..726 | 7..612 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:00 Download gff for
BS06578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SC35-RB | 127..714 | 17..604 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:00 Download gff for
BS06578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12432345..12432723 | 226..604 | 100 | <- | Minus |
2L | 12433579..12433709 | 95..225 | 100 | <- | Minus |
2L | 12433835..12433912 | 17..94 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:41 Download gff for
BS06578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12433579..12433709 | 95..225 | 100 | <- | Minus |
arm_2L | 12433835..12433912 | 17..94 | 100 | | Minus |
arm_2L | 12432345..12432723 | 226..604 | 100 | <- | Minus |
BS06578.pep Sequence
Translation from 16 to 603
> BS06578.pep
MSNGGGAGGLGAARPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVG
DIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAMDGRMLDGRELRVQMAR
YGRPSSPTRSSSGRRGGGGGGGSGGRRRSRSRSPMRRRSRSPRRRSYSRS
RSPGSHSPERRSKFSRSPVRGDSRNGIGSGSGGLAPAASRSRSRS*
BS06578.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SC35-PD | 195 | CG5442-PD | 1..195 | 1..195 | 1009 | 100 | Plus |
SC35-PC | 195 | CG5442-PC | 1..195 | 1..195 | 1009 | 100 | Plus |
SC35-PB | 195 | CG5442-PB | 1..195 | 1..195 | 1009 | 100 | Plus |
SC35-PA | 112 | CG5442-PA | 1..112 | 84..195 | 571 | 100 | Plus |
Rbp1-PA | 135 | CG17136-PA | 15..134 | 27..160 | 222 | 42.5 | Plus |