Clone BS06578 Report

Search the DGRC for BS06578

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:65
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptSC35-RB
Protein status:BS06578.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06578.3prime Sequence

618 bp (617 high quality bases) assembled on 2005-12-03

> BS06578.3prime
ATGGTCTAGAAAGCTTCTAGGAGCGACTGCGACTACGAGACGCGGCTGGG
GCCAGTCCTCCAGATCCGCTTCCGATTCCATTGCGGCTGTCGCCGCGTAC
TGGACTGCGTGAAAATTTGGATCGGCGTTCCGGCGAGTGGCTACCAGGCG
AGCGGGAACGGGAGTATGATCGGCGACGCGGACTGCGCGAACGACGGCGC
ATTGGGGAGCGAGAACGTGACCGACGACGCCCGCCGGAACCACCGCCTCC
TCCTCCGCCACGACGACCACTGGAGCTGCGAGTGGGCGAAGAGGGGCGTC
CGTAGCGGGCCATCTGTACGCGGAGCTCCCTGCCGTCTAGCATGCGACCA
TCCATGGCCTCCAGTGCGTCCTCGGCATCACGTTTGTCATAGAAGCGAAC
AAATGCGAATCCGCGGCTCTCACGTGTGTAGCGATCCCTGGGTATGTAGA
TGTCCCCCACCTCGCCGCACCGCTCGAAGACCCGACGCAGATCCTCCGGC
GTGGTGCGATATGTGAGATTGTCGACCTTAAGCGAGACCATTCCATCGAT
CCGTGGAGGTGGACGCGCTGCGCCCAATCCCCCGGCACCACCACCGTTGC
TCATGTCGACTGATAACT

BS06578.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG5442-PB 588 SC35-RB 1..588 604..17 2940 100 Minus
CG5442-PA 339 SC35-RA 1..339 355..17 1695 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
SC35-RD 1880 CG5442-RD 127..715 604..16 2945 100 Minus
SC35-RC 1441 CG5442-RC 127..715 604..16 2945 100 Minus
SC35-RB 1077 CG5442-RB 127..715 604..16 2945 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12432344..12432732 16..404 1915 99.5 Plus
2L 23513712 2L 12433579..12433711 396..528 665 100 Plus
2L 23513712 2L 12433834..12433912 526..604 395 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:51:49 has no hits.

BS06578.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:45:39 Download gff for BS06578.3prime
Subject Subject Range Query Range Percent Splice Strand
SC35-PB 1..588 17..604 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:26:16 Download gff for BS06578.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5442-PB 1..588 17..604 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:42:44 Download gff for BS06578.3prime
Subject Subject Range Query Range Percent Splice Strand
SC35-RB 120..719 9..614 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:03 Download gff for BS06578.3prime
Subject Subject Range Query Range Percent Splice Strand
SC35-RB 120..719 9..614 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:03 Download gff for BS06578.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 12432340..12432723 9..395 98 <- Plus
2L 12433579..12433709 396..526 100 <- Plus
2L 12433835..12433919 527..614 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:42:44 Download gff for BS06578.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12432340..12432723 9..395 98 <- Plus
arm_2L 12433579..12433709 396..526 100 <- Plus
arm_2L 12433835..12433919 527..614 95   Plus

BS06578.5prime Sequence

618 bp (617 high quality bases) assembled on 2005-12-03

> BS06578.5prime
GAAGTTATCAGTCGACATGAGCAACGGTGGTGGTGCCGGGGGATTGGGCG
CAGCGCGTCCACCTCCACGGATCGATGGAATGGTCTCGCTTAAGGTCGAC
AATCTCACATATCGCACCACGCCGGAGGATCTGCGTCGGGTCTTCGAGCG
GTGCGGCGAGGTGGGGGACATCTACATACCCAGGGATCGCTACACACGTG
AGAGCCGCGGATTCGCATTTGTTCGCTTCTATGACAAACGTGATGCCGAG
GACGCACTGGAGGCCATGGATGGTCGCATGCTAGACGGCAGGGAGCTCCG
CGTACAGATGGCCCGCTACGGACGCCCCTCTTCGCCCACTCGCAGCTCCA
GTGGTCGTCGTGGCGGAGGAGGAGGCGGTGGTTCCGGCGGGCGTCGTCGG
TCACGTTCTCGCTCCCCAATGCGCCGTCGTTCGCGCAGTCCGCGTCGCCG
ATCATACTCCCGTTCCCGCTCGCCTGGTAGCCACTCGCCGGAACGCCGAT
CCAAATTTTCACGCAGTCCAGTACGCGGCGACAGCCGCAATGGAATCGGA
AGCGGATCTGGAGGACTGGCCCCAGCCGCGTCTCGTAGTCGCAGTCGCTC
CTAGAAGCTTTCTAGACC

BS06578.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5442-PB 588 SC35-RB 1..588 17..604 2940 100 Plus
CG5442-PA 339 SC35-RA 1..339 266..604 1695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:05:31
Subject Length Description Subject Range Query Range Score Percent Strand
SC35-RD 1880 CG5442-RD 127..715 17..605 2945 100 Plus
SC35-RC 1441 CG5442-RC 127..715 17..605 2945 100 Plus
SC35-RB 1077 CG5442-RB 127..715 17..605 2945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12432344..12432732 605..217 1915 99.5 Minus
2L 23513712 2L 12433579..12433711 225..93 665 100 Minus
2L 23513712 2L 12433834..12433912 95..17 395 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:05:27 has no hits.

BS06578.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:45:40 Download gff for BS06578.5prime
Subject Subject Range Query Range Percent Splice Strand
SC35-PB 1..588 17..604 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:26:18 Download gff for BS06578.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5442-PB 1..588 17..604 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:31:04 Download gff for BS06578.5prime
Subject Subject Range Query Range Percent Splice Strand
SC35-RB 120..719 7..612 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:02:25 Download gff for BS06578.5prime
Subject Subject Range Query Range Percent Splice Strand
SC35-RB 120..719 7..612 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:02:25 Download gff for BS06578.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12432340..12432723 226..612 98 <- Minus
2L 12433579..12433709 95..225 100 <- Minus
2L 12433835..12433919 7..94 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:31:04 Download gff for BS06578.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12432340..12432723 226..612 98 <- Minus
arm_2L 12433579..12433709 95..225 100 <- Minus
arm_2L 12433835..12433919 7..94 95   Minus

BS06578.complete Sequence

620 bp (620 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635548

> BS06578.complete
GAAGTTATCAGTCGACATGAGCAACGGTGGTGGTGCCGGGGGATTGGGCG
CAGCGCGTCCACCTCCACGGATCGATGGAATGGTCTCGCTTAAGGTCGAC
AATCTCACATATCGCACCACGCCGGAGGATCTGCGTCGGGTCTTCGAGCG
GTGCGGCGAGGTGGGGGACATCTACATACCCAGGGATCGCTACACACGTG
AGAGCCGCGGATTCGCATTTGTTCGCTTCTATGACAAACGTGATGCCGAG
GACGCACTGGAGGCCATGGATGGTCGCATGCTAGACGGCAGGGAGCTCCG
CGTACAGATGGCCCGCTACGGACGCCCCTCTTCGCCCACTCGCAGCTCCA
GTGGTCGTCGTGGCGGAGGAGGAGGCGGTGGTTCCGGCGGGCGTCGTCGG
TCACGTTCTCGCTCCCCAATGCGCCGTCGTTCGCGCAGTCCGCGTCGCCG
ATCATACTCCCGTTCCCGCTCGCCTGGTAGCCACTCGCCGGAACGCCGAT
CCAAATTTTCACGCAGTCCAGTACGCGGCGACAGCCGCAATGGAATCGGA
AGCGGATCTGGAGGACTGGCCCCAGCCGCGTCTCGTAGTCGCAGTCGCTC
CTAGAAGCTTTCTAGACCAT

BS06578.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
SC35-RD 588 CG5442-PD 1..588 17..604 2940 100 Plus
SC35-RC 588 CG5442-PC 1..588 17..604 2940 100 Plus
SC35-RB 588 CG5442-PB 1..588 17..604 2940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
SC35-RD 1880 CG5442-RD 127..715 17..605 2945 100 Plus
SC35-RC 1441 CG5442-RC 127..715 17..605 2945 100 Plus
SC35-RB 1077 CG5442-RB 127..715 17..605 2945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12432344..12432732 605..217 1915 99.5 Minus
2L 23513712 2L 12433579..12433711 225..93 665 100 Minus
2L 23513712 2L 12433834..12433912 95..17 395 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:34:19 has no hits.

BS06578.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:25 Download gff for BS06578.complete
Subject Subject Range Query Range Percent Splice Strand
SC35-RB 1..588 17..604 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:43 Download gff for BS06578.complete
Subject Subject Range Query Range Percent Splice Strand
SC35-RB 127..726 7..612 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:41 Download gff for BS06578.complete
Subject Subject Range Query Range Percent Splice Strand
SC35-RB 127..714 17..604 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:26 Download gff for BS06578.complete
Subject Subject Range Query Range Percent Splice Strand
SC35-RB 127..726 7..612 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:00 Download gff for BS06578.complete
Subject Subject Range Query Range Percent Splice Strand
SC35-RB 127..714 17..604 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:00 Download gff for BS06578.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12432345..12432723 226..604 100 <- Minus
2L 12433579..12433709 95..225 100 <- Minus
2L 12433835..12433912 17..94 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:41 Download gff for BS06578.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12433579..12433709 95..225 100 <- Minus
arm_2L 12433835..12433912 17..94 100   Minus
arm_2L 12432345..12432723 226..604 100 <- Minus

BS06578.pep Sequence

Translation from 16 to 603

> BS06578.pep
MSNGGGAGGLGAARPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVG
DIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAMDGRMLDGRELRVQMAR
YGRPSSPTRSSSGRRGGGGGGGSGGRRRSRSRSPMRRRSRSPRRRSYSRS
RSPGSHSPERRSKFSRSPVRGDSRNGIGSGSGGLAPAASRSRSRS*

BS06578.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
SC35-PD 195 CG5442-PD 1..195 1..195 1009 100 Plus
SC35-PC 195 CG5442-PC 1..195 1..195 1009 100 Plus
SC35-PB 195 CG5442-PB 1..195 1..195 1009 100 Plus
SC35-PA 112 CG5442-PA 1..112 84..195 571 100 Plus
Rbp1-PA 135 CG17136-PA 15..134 27..160 222 42.5 Plus