Clone Sequence Records
BS06579.3prime Sequence
759 bp (758 high quality bases) assembled on 2005-12-03
> BS06579.3prime
ATGGTCTAGAAAGCTTTTAATCGCGTAGGGCGTCGATTTCCAATCGAAGC
TTCTGAATCTTAAGCAAAGTCAGTGTGCGCTCTACTTTTAGATTGTCCGT
TTCCGTTTTAAGAAACTTGGTCTTACTCTGGAACTGACTGATCTCGGCTC
GCGCCTTTTCCGCTCGCAATGCAGCTAAACCATTTCTTGGCCTGGCCTCG
ATGATCGTCGCCGATCCATTGGCTAAGTCATCCGGGTTTTGCTGCAATAT
GTAATGTTCTTTGCTTTCGTCCAGGTACTCAGAGTATTCGGGATTTTTAA
TTTCAACGTTGGAAATTTCAAATTCCAAATTTTGCTCGCCAGACTCTTCC
GTTTTGGTCAGTTTCCTTTTGCGAATTTCTCGTTTCACTCTGGGTTGCTC
CTTGGGCGCCTCAGCCTCGTCAGCATCGTCCAGAATTTGTTGTATCTTAA
CAATGATCTCCTTGCCTTCGTTGGCATTATCCAGGCCGCCATCATCGTCG
CCCGAAATCTTCTGGATCTTTATCCTAGGAGCCTCGTCATGATCCTTCTC
GTCGGCAGAAGTGTACACTACAGCGCTTCTACTTCGCCGGGCATCGCAGG
TTTGCCTGTGTAACGATAGCCGGGATAGCGCCGTATTTTGGAGTACTTTT
TCGCAGAAGTGACAGGTGGCCGAGTATTTGCCATTCTCCAAATTGGCGGT
AAATCCGTGGGTTCTGTAAAAATCCTCGGACTTCTTTCGGGGCATGTCGA
CTGATAACT
BS06579.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8436-PA | 729 | CG8436-RA | 1..729 | 745..17 | 3645 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:08:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ibf1-RA | 963 | CG8436-RA | 85..815 | 745..15 | 3655 | 100 | Minus |
Ibf1-RB | 948 | CG8436-RB | 85..800 | 745..15 | 3420 | 97.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:08:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9260011..9260252 | 256..15 | 1210 | 100 | Minus |
3R | 32079331 | 3R | 9259766..9259956 | 447..257 | 955 | 100 | Minus |
3R | 32079331 | 3R | 9259048..9259188 | 745..605 | 705 | 100 | Minus |
3R | 32079331 | 3R | 9259252..9259341 | 607..518 | 450 | 100 | Minus |
3R | 32079331 | 3R | 9259630..9259703 | 519..446 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:08:35 has no hits.
BS06579.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:45:41 Download gff for
BS06579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8436-PA | 1..729 | 17..745 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:26:19 Download gff for
BS06579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8436-PA | 1..729 | 17..745 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:14:18 Download gff for
BS06579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8436-RA | 85..824 | 7..745 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:28:34 Download gff for
BS06579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ibf1-RA | 85..824 | 7..745 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:28:34 Download gff for
BS06579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9259048..9259187 | 606..745 | 100 | -> | Minus |
3R | 9259254..9259341 | 518..605 | 100 | -> | Minus |
3R | 9259632..9259703 | 446..517 | 100 | -> | Minus |
3R | 9259768..9259956 | 257..445 | 100 | -> | Minus |
3R | 9260011..9260261 | 7..256 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:14:18 Download gff for
BS06579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5084770..5084909 | 606..745 | 100 | -> | Minus |
arm_3R | 5084976..5085063 | 518..605 | 100 | -> | Minus |
arm_3R | 5085354..5085425 | 446..517 | 100 | -> | Minus |
arm_3R | 5085490..5085678 | 257..445 | 100 | -> | Minus |
arm_3R | 5085733..5085983 | 7..256 | 98 | | Minus |
BS06579.5prime Sequence
759 bp (758 high quality bases) assembled on 2005-12-03
> BS06579.5prime
GAAGTTATCAGTCGACATGCCCCGAAAGAAGTCCGAGGATTTTTACAGAA
CCCACGGATTTACCGCCAATTTGGAGAATGGCAAATACTCGGCCACCTGT
CACTTCTGCGAAAAAGTACTCCAAAATACGGCGCTATCCCGGCTATCGTT
ACACAGGCAAACCTGCGATGCCCGGCGAAGTAGAAGCGCTGTAGTGTACA
CTTCTGCCGACGAGAAGGATCATGACGAGGCTCCTAGGATAAAGATCCAG
AAGATTTCGGGCGACGATGATGGCGGCCTGGATAATGCCAACGAAGGCAA
GGAGATCATTGTTAAGATACAACAAATTCTGGACGATGCTGACGAGGCTG
AGGCGCCCAAGGAGCAACCCAGAGTGAAACGAGAAATTCGCAAAAGGAAA
CTGACCAAAACGGAAGAGTCTGGCGAGCAAAATTTGGAATTTGAAATTTC
CAACGTTGAAATTAAAAATCCCGAATACTCTGAGTACCTGGACGAAAGCA
AAGAACATTACATATTGCAGCAAAACCCGGATGACTTAGCCAATGGATCG
GCGACGATCATCGAGGCCAGGCCAAGAAATGGTTTAGCTGCATTGCGAGC
GGAAAAGGCGCGAGCCGAGATCAGTCAGTTCCAGAGTAAGACCAAGTTTC
TTAAAACGGAAACGGACAATCTAAAAGTAGAGCGCACACTGACTTTGCTT
AAGATTCAGAAGCTTCGATTGGAAATCGACGCCCTACGCGATTAANAGCT
TTCTAGACC
BS06579.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8436-PA | 729 | CG8436-RA | 1..729 | 17..745 | 3645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:49:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ibf1-RA | 963 | CG8436-RA | 85..813 | 17..745 | 3645 | 100 | Plus |
Ibf1-RB | 948 | CG8436-RB | 85..798 | 17..745 | 3410 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:49:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9260011..9260250 | 506..745 | 1200 | 100 | Plus |
3R | 32079331 | 3R | 9259766..9259956 | 315..505 | 955 | 100 | Plus |
3R | 32079331 | 3R | 9259048..9259188 | 17..157 | 705 | 100 | Plus |
3R | 32079331 | 3R | 9259252..9259341 | 155..244 | 450 | 100 | Plus |
3R | 32079331 | 3R | 9259630..9259703 | 243..316 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:49:40 has no hits.
BS06579.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:45:42 Download gff for
BS06579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8436-PA | 1..729 | 17..745 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:26:20 Download gff for
BS06579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8436-PA | 1..729 | 17..745 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:44:22 Download gff for
BS06579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8436-RA | 85..813 | 17..745 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:02 Download gff for
BS06579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ibf1-RA | 85..813 | 17..745 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:02 Download gff for
BS06579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9259048..9259187 | 17..156 | 100 | -> | Plus |
3R | 9259254..9259341 | 157..244 | 100 | -> | Plus |
3R | 9259632..9259703 | 245..316 | 100 | -> | Plus |
3R | 9259768..9259956 | 317..505 | 100 | -> | Plus |
3R | 9260011..9260250 | 506..745 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:44:22 Download gff for
BS06579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5084770..5084909 | 17..156 | 100 | -> | Plus |
arm_3R | 5084976..5085063 | 157..244 | 100 | -> | Plus |
arm_3R | 5085354..5085425 | 245..316 | 100 | -> | Plus |
arm_3R | 5085490..5085678 | 317..505 | 100 | -> | Plus |
arm_3R | 5085733..5085972 | 506..745 | 100 | | Plus |
BS06579.complete Sequence
761 bp (761 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635549
> BS06579.complete
GAAGTTATCAGTCGACATGCCCCGAAAGAAGTCCGAGGATTTTTACAGAA
CCCACGGATTTACCGCCAATTTGGAGAATGGCAAATACTCGGCCACCTGT
CACTTCTGCGAAAAAGTACTCCAAAATACGGCGCTATCCCGGCTATCGTT
ACACAGGCAAACCTGCGATGCCCGGCGAAGTAGAAGCGCTGTAGTGTACA
CTTCTGCCGACGAGAAGGATCATGACGAGGCTCCTAGGATAAAGATCCAG
AAGATTTCGGGCGACGATGATGGCGGCCTGGATAATGCCAACGAAGGCAA
GGAGATCATTGTTAAGATACAACAAATTCTGGACGATGCTGACGAGGCTG
AGGCGCCCAAGGAGCAACCCAGAGTGAAACGAGAAATTCGCAAAAGGAAA
CTGACCAAAACGGAAGAGTCTGGCGAGCAAAATTTGGAATTTGAAATTTC
CAACGTTGAAATTAAAAATCCCGAATACTCTGAGTACCTGGACGAAAGCA
AAGAACATTACATATTGCAGCAAAACCCGGATGACTTAGCCAATGGATCG
GCGACGATCATCGAGGCCAGGCCAAGAAATGGTTTAGCTGCATTGCGAGC
GGAAAAGGCGCGAGCCGAGATCAGTCAGTTCCAGAGTAAGACCAAGTTTC
TTAAAACGGAAACGGACAATCTAAAAGTAGAGCGCACACTGACTTTGCTT
AAGATTCAGAAGCTTCGATTGGAAATCGACGCCCTACGCGATTAAAAGCT
TTCTAGACCAT
BS06579.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:40:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ibf1-RA | 729 | CG8436-PA | 1..729 | 17..745 | 3645 | 100 | Plus |
Ibf1-RB | 714 | CG8436-PB | 1..714 | 17..745 | 3385 | 97.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:40:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ibf1-RA | 963 | CG8436-RA | 85..815 | 17..747 | 3655 | 100 | Plus |
Ibf1-RB | 948 | CG8436-RB | 85..800 | 17..747 | 3395 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:40:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9260011..9260252 | 506..747 | 1210 | 100 | Plus |
3R | 32079331 | 3R | 9259766..9259956 | 315..505 | 955 | 100 | Plus |
3R | 32079331 | 3R | 9259048..9259188 | 17..157 | 705 | 100 | Plus |
3R | 32079331 | 3R | 9259252..9259341 | 155..244 | 450 | 100 | Plus |
3R | 32079331 | 3R | 9259630..9259703 | 243..316 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:40:27 has no hits.
BS06579.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:27 Download gff for
BS06579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8436-RA | 1..729 | 17..745 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:44 Download gff for
BS06579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8436-RA | 80..819 | 17..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:07 Download gff for
BS06579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8436-RA | 85..811 | 17..743 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:27 Download gff for
BS06579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8436-RA | 80..819 | 17..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:31 Download gff for
BS06579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ibf1-RA | 85..811 | 17..743 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:31 Download gff for
BS06579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9260011..9260248 | 506..743 | 100 | | Plus |
3R | 9259048..9259187 | 17..156 | 100 | -> | Plus |
3R | 9259254..9259341 | 157..244 | 100 | -> | Plus |
3R | 9259632..9259703 | 245..316 | 100 | -> | Plus |
3R | 9259768..9259956 | 317..505 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:07 Download gff for
BS06579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5084770..5084909 | 17..156 | 100 | -> | Plus |
arm_3R | 5084976..5085063 | 157..244 | 100 | -> | Plus |
arm_3R | 5085354..5085425 | 245..316 | 100 | -> | Plus |
arm_3R | 5085490..5085678 | 317..505 | 100 | -> | Plus |
arm_3R | 5085733..5085970 | 506..743 | 100 | | Plus |
BS06579.pep Sequence
Translation from 16 to 744
> BS06579.pep
MPRKKSEDFYRTHGFTANLENGKYSATCHFCEKVLQNTALSRLSLHRQTC
DARRSRSAVVYTSADEKDHDEAPRIKIQKISGDDDGGLDNANEGKEIIVK
IQQILDDADEAEAPKEQPRVKREIRKRKLTKTEESGEQNLEFEISNVEIK
NPEYSEYLDESKEHYILQQNPDDLANGSATIIEARPRNGLAALRAEKARA
EISQFQSKTKFLKTETDNLKVERTLTLLKIQKLRLEIDALRD*
BS06579.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ibf1-PA | 242 | CG8436-PA | 1..242 | 1..242 | 1228 | 100 | Plus |
Ibf1-PB | 237 | CG8436-PB | 1..237 | 1..242 | 1184 | 97.9 | Plus |