Clone BS06579 Report

Search the DGRC for BS06579

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:65
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptIbf1-RA
Protein status:BS06579.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06579.3prime Sequence

759 bp (758 high quality bases) assembled on 2005-12-03

> BS06579.3prime
ATGGTCTAGAAAGCTTTTAATCGCGTAGGGCGTCGATTTCCAATCGAAGC
TTCTGAATCTTAAGCAAAGTCAGTGTGCGCTCTACTTTTAGATTGTCCGT
TTCCGTTTTAAGAAACTTGGTCTTACTCTGGAACTGACTGATCTCGGCTC
GCGCCTTTTCCGCTCGCAATGCAGCTAAACCATTTCTTGGCCTGGCCTCG
ATGATCGTCGCCGATCCATTGGCTAAGTCATCCGGGTTTTGCTGCAATAT
GTAATGTTCTTTGCTTTCGTCCAGGTACTCAGAGTATTCGGGATTTTTAA
TTTCAACGTTGGAAATTTCAAATTCCAAATTTTGCTCGCCAGACTCTTCC
GTTTTGGTCAGTTTCCTTTTGCGAATTTCTCGTTTCACTCTGGGTTGCTC
CTTGGGCGCCTCAGCCTCGTCAGCATCGTCCAGAATTTGTTGTATCTTAA
CAATGATCTCCTTGCCTTCGTTGGCATTATCCAGGCCGCCATCATCGTCG
CCCGAAATCTTCTGGATCTTTATCCTAGGAGCCTCGTCATGATCCTTCTC
GTCGGCAGAAGTGTACACTACAGCGCTTCTACTTCGCCGGGCATCGCAGG
TTTGCCTGTGTAACGATAGCCGGGATAGCGCCGTATTTTGGAGTACTTTT
TCGCAGAAGTGACAGGTGGCCGAGTATTTGCCATTCTCCAAATTGGCGGT
AAATCCGTGGGTTCTGTAAAAATCCTCGGACTTCTTTCGGGGCATGTCGA
CTGATAACT

BS06579.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8436-PA 729 CG8436-RA 1..729 745..17 3645 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:08:36
Subject Length Description Subject Range Query Range Score Percent Strand
Ibf1-RA 963 CG8436-RA 85..815 745..15 3655 100 Minus
Ibf1-RB 948 CG8436-RB 85..800 745..15 3420 97.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:08:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9260011..9260252 256..15 1210 100 Minus
3R 32079331 3R 9259766..9259956 447..257 955 100 Minus
3R 32079331 3R 9259048..9259188 745..605 705 100 Minus
3R 32079331 3R 9259252..9259341 607..518 450 100 Minus
3R 32079331 3R 9259630..9259703 519..446 370 100 Minus
Blast to na_te.dros performed on 2015-02-10 19:08:35 has no hits.

BS06579.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:45:41 Download gff for BS06579.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8436-PA 1..729 17..745 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:26:19 Download gff for BS06579.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8436-PA 1..729 17..745 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:14:18 Download gff for BS06579.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8436-RA 85..824 7..745 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:28:34 Download gff for BS06579.3prime
Subject Subject Range Query Range Percent Splice Strand
Ibf1-RA 85..824 7..745 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:28:34 Download gff for BS06579.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9259048..9259187 606..745 100 -> Minus
3R 9259254..9259341 518..605 100 -> Minus
3R 9259632..9259703 446..517 100 -> Minus
3R 9259768..9259956 257..445 100 -> Minus
3R 9260011..9260261 7..256 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:14:18 Download gff for BS06579.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5084770..5084909 606..745 100 -> Minus
arm_3R 5084976..5085063 518..605 100 -> Minus
arm_3R 5085354..5085425 446..517 100 -> Minus
arm_3R 5085490..5085678 257..445 100 -> Minus
arm_3R 5085733..5085983 7..256 98   Minus

BS06579.5prime Sequence

759 bp (758 high quality bases) assembled on 2005-12-03

> BS06579.5prime
GAAGTTATCAGTCGACATGCCCCGAAAGAAGTCCGAGGATTTTTACAGAA
CCCACGGATTTACCGCCAATTTGGAGAATGGCAAATACTCGGCCACCTGT
CACTTCTGCGAAAAAGTACTCCAAAATACGGCGCTATCCCGGCTATCGTT
ACACAGGCAAACCTGCGATGCCCGGCGAAGTAGAAGCGCTGTAGTGTACA
CTTCTGCCGACGAGAAGGATCATGACGAGGCTCCTAGGATAAAGATCCAG
AAGATTTCGGGCGACGATGATGGCGGCCTGGATAATGCCAACGAAGGCAA
GGAGATCATTGTTAAGATACAACAAATTCTGGACGATGCTGACGAGGCTG
AGGCGCCCAAGGAGCAACCCAGAGTGAAACGAGAAATTCGCAAAAGGAAA
CTGACCAAAACGGAAGAGTCTGGCGAGCAAAATTTGGAATTTGAAATTTC
CAACGTTGAAATTAAAAATCCCGAATACTCTGAGTACCTGGACGAAAGCA
AAGAACATTACATATTGCAGCAAAACCCGGATGACTTAGCCAATGGATCG
GCGACGATCATCGAGGCCAGGCCAAGAAATGGTTTAGCTGCATTGCGAGC
GGAAAAGGCGCGAGCCGAGATCAGTCAGTTCCAGAGTAAGACCAAGTTTC
TTAAAACGGAAACGGACAATCTAAAAGTAGAGCGCACACTGACTTTGCTT
AAGATTCAGAAGCTTCGATTGGAAATCGACGCCCTACGCGATTAANAGCT
TTCTAGACC

BS06579.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:28:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8436-PA 729 CG8436-RA 1..729 17..745 3645 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:49:43
Subject Length Description Subject Range Query Range Score Percent Strand
Ibf1-RA 963 CG8436-RA 85..813 17..745 3645 100 Plus
Ibf1-RB 948 CG8436-RB 85..798 17..745 3410 97.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9260011..9260250 506..745 1200 100 Plus
3R 32079331 3R 9259766..9259956 315..505 955 100 Plus
3R 32079331 3R 9259048..9259188 17..157 705 100 Plus
3R 32079331 3R 9259252..9259341 155..244 450 100 Plus
3R 32079331 3R 9259630..9259703 243..316 370 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:49:40 has no hits.

BS06579.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:45:42 Download gff for BS06579.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8436-PA 1..729 17..745 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:26:20 Download gff for BS06579.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8436-PA 1..729 17..745 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:44:22 Download gff for BS06579.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8436-RA 85..813 17..745 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:02 Download gff for BS06579.5prime
Subject Subject Range Query Range Percent Splice Strand
Ibf1-RA 85..813 17..745 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:02 Download gff for BS06579.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9259048..9259187 17..156 100 -> Plus
3R 9259254..9259341 157..244 100 -> Plus
3R 9259632..9259703 245..316 100 -> Plus
3R 9259768..9259956 317..505 100 -> Plus
3R 9260011..9260250 506..745 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:44:22 Download gff for BS06579.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5084770..5084909 17..156 100 -> Plus
arm_3R 5084976..5085063 157..244 100 -> Plus
arm_3R 5085354..5085425 245..316 100 -> Plus
arm_3R 5085490..5085678 317..505 100 -> Plus
arm_3R 5085733..5085972 506..745 100   Plus

BS06579.complete Sequence

761 bp (761 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635549

> BS06579.complete
GAAGTTATCAGTCGACATGCCCCGAAAGAAGTCCGAGGATTTTTACAGAA
CCCACGGATTTACCGCCAATTTGGAGAATGGCAAATACTCGGCCACCTGT
CACTTCTGCGAAAAAGTACTCCAAAATACGGCGCTATCCCGGCTATCGTT
ACACAGGCAAACCTGCGATGCCCGGCGAAGTAGAAGCGCTGTAGTGTACA
CTTCTGCCGACGAGAAGGATCATGACGAGGCTCCTAGGATAAAGATCCAG
AAGATTTCGGGCGACGATGATGGCGGCCTGGATAATGCCAACGAAGGCAA
GGAGATCATTGTTAAGATACAACAAATTCTGGACGATGCTGACGAGGCTG
AGGCGCCCAAGGAGCAACCCAGAGTGAAACGAGAAATTCGCAAAAGGAAA
CTGACCAAAACGGAAGAGTCTGGCGAGCAAAATTTGGAATTTGAAATTTC
CAACGTTGAAATTAAAAATCCCGAATACTCTGAGTACCTGGACGAAAGCA
AAGAACATTACATATTGCAGCAAAACCCGGATGACTTAGCCAATGGATCG
GCGACGATCATCGAGGCCAGGCCAAGAAATGGTTTAGCTGCATTGCGAGC
GGAAAAGGCGCGAGCCGAGATCAGTCAGTTCCAGAGTAAGACCAAGTTTC
TTAAAACGGAAACGGACAATCTAAAAGTAGAGCGCACACTGACTTTGCTT
AAGATTCAGAAGCTTCGATTGGAAATCGACGCCCTACGCGATTAAAAGCT
TTCTAGACCAT

BS06579.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:40:28
Subject Length Description Subject Range Query Range Score Percent Strand
Ibf1-RA 729 CG8436-PA 1..729 17..745 3645 100 Plus
Ibf1-RB 714 CG8436-PB 1..714 17..745 3385 97.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:40:30
Subject Length Description Subject Range Query Range Score Percent Strand
Ibf1-RA 963 CG8436-RA 85..815 17..747 3655 100 Plus
Ibf1-RB 948 CG8436-RB 85..800 17..747 3395 97.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:40:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9260011..9260252 506..747 1210 100 Plus
3R 32079331 3R 9259766..9259956 315..505 955 100 Plus
3R 32079331 3R 9259048..9259188 17..157 705 100 Plus
3R 32079331 3R 9259252..9259341 155..244 450 100 Plus
3R 32079331 3R 9259630..9259703 243..316 370 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:40:27 has no hits.

BS06579.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:27 Download gff for BS06579.complete
Subject Subject Range Query Range Percent Splice Strand
CG8436-RA 1..729 17..745 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:44 Download gff for BS06579.complete
Subject Subject Range Query Range Percent Splice Strand
CG8436-RA 80..819 17..755 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:07 Download gff for BS06579.complete
Subject Subject Range Query Range Percent Splice Strand
CG8436-RA 85..811 17..743 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:27 Download gff for BS06579.complete
Subject Subject Range Query Range Percent Splice Strand
CG8436-RA 80..819 17..755 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:31 Download gff for BS06579.complete
Subject Subject Range Query Range Percent Splice Strand
Ibf1-RA 85..811 17..743 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:31 Download gff for BS06579.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9260011..9260248 506..743 100   Plus
3R 9259048..9259187 17..156 100 -> Plus
3R 9259254..9259341 157..244 100 -> Plus
3R 9259632..9259703 245..316 100 -> Plus
3R 9259768..9259956 317..505 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:07 Download gff for BS06579.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5084770..5084909 17..156 100 -> Plus
arm_3R 5084976..5085063 157..244 100 -> Plus
arm_3R 5085354..5085425 245..316 100 -> Plus
arm_3R 5085490..5085678 317..505 100 -> Plus
arm_3R 5085733..5085970 506..743 100   Plus

BS06579.pep Sequence

Translation from 16 to 744

> BS06579.pep
MPRKKSEDFYRTHGFTANLENGKYSATCHFCEKVLQNTALSRLSLHRQTC
DARRSRSAVVYTSADEKDHDEAPRIKIQKISGDDDGGLDNANEGKEIIVK
IQQILDDADEAEAPKEQPRVKREIRKRKLTKTEESGEQNLEFEISNVEIK
NPEYSEYLDESKEHYILQQNPDDLANGSATIIEARPRNGLAALRAEKARA
EISQFQSKTKFLKTETDNLKVERTLTLLKIQKLRLEIDALRD*

BS06579.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:31
Subject Length Description Subject Range Query Range Score Percent Strand
Ibf1-PA 242 CG8436-PA 1..242 1..242 1228 100 Plus
Ibf1-PB 237 CG8436-PB 1..237 1..242 1184 97.9 Plus