Clone Sequence Records
BS06585.3prime Sequence
798 bp (755 high quality bases) assembled on 2005-12-03
> BS06585.3prime
ATGGTCTAGAAAGCTTTCAAAGGTCGGCTGCTTTTGTAGGCAGTGAGCTG
GCAACGGCAACGGTGGCTGCCTCTCCCAGAGACTGCTCCAGCTGCACGGC
CACCTCATCCAGGTGCTGGAGAGCCTCCTTGGCCTTGCGGTTGCGTCCGT
CCACGAAGATCTGCGTGTCCAGGAAGTGCAGGGCGCGGAAGGCCATACCG
CCTTGCGGGTCATATAAGCTGTCGAACTTTTTCGGATTCCTGGCGCTGGC
ACTCTGGTCCGGCGTGTCGGGATCGAAGGGCACGTATTCCTGAATCGGCT
CCTTGTGCCACCGGAAAATGTTTCGCGAATCTAGATCAGCCAGCACTCGC
GTCATTTCTCGTATCTGGGCATCCTGTCGCTCCAGCCGAAAGTTCATCTC
CGTCAGCATATTGGTTAGTTCCATCTTCTCCGATTGCGCCAACTCGTTTT
TCTTGTTCTCCTTGATGGTTTGACGTGAGTACTCGAAAATCAAAAGACCG
GCTCCGATCGAGAAGATGATGAACTCGCCAAGCAGATTGGCTCCCAGCTC
AATGGCCATCGCCTCGTTCAGCGGTGGAACATTAACGCGACCACCCATGT
TCAGGGCCCACATCTTGGTCTTCACCTCTACCCAGTTGTAGAACTGTGCG
GGCGGCATGCATATGTACTTCCTGAAGAAGGGGCTCGATTTGGCATTGGA
CTTAATCACGTTGGCTATCGGCTTGCTGACCTGCTTGATGGCCAAAATGC
CGAGCTTGGCCGCCGGGAAGACGCCAATAACCATGTCGACTGATAACT
BS06585.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13601-PA | 768 | CG13601-RA | 1..768 | 784..17 | 3840 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:24:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13601-RB | 1091 | CG13601-RB | 67..834 | 784..17 | 3840 | 100 | Minus |
CG13601-RA | 1091 | CG13601-RA | 67..834 | 784..17 | 3840 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:24:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23926629..23926944 | 17..332 | 1580 | 100 | Plus |
3R | 32079331 | 3R | 23927203..23927371 | 474..642 | 845 | 100 | Plus |
3R | 32079331 | 3R | 23926998..23927145 | 327..474 | 725 | 99.3 | Plus |
3R | 32079331 | 3R | 23927427..23927568 | 643..784 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 01:24:37 has no hits.
BS06585.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:45:51 Download gff for
BS06585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13601-PA | 1..768 | 17..784 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:26:34 Download gff for
BS06585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13601-PA | 1..768 | 17..784 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:54:22 Download gff for
BS06585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13601-RA | 67..834 | 17..784 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:08:28 Download gff for
BS06585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13601-RA | 67..834 | 17..784 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:08:28 Download gff for
BS06585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23926629..23926942 | 17..330 | 100 | <- | Plus |
3R | 23927002..23927144 | 331..473 | 100 | <- | Plus |
3R | 23927203..23927371 | 474..642 | 100 | <- | Plus |
3R | 23927427..23927568 | 643..784 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:54:22 Download gff for
BS06585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19753149..19753290 | 643..784 | 100 | | Plus |
arm_3R | 19752351..19752664 | 17..330 | 100 | <- | Plus |
arm_3R | 19752724..19752866 | 331..473 | 100 | <- | Plus |
arm_3R | 19752925..19753093 | 474..642 | 100 | <- | Plus |
BS06585.5prime Sequence
798 bp (797 high quality bases) assembled on 2005-12-03
> BS06585.5prime
GAAGTTATCAGTCGACATGGTTATTGGCGTCTTCCCGGCGGCCAAGCTCG
GCATTTTGGCCATCAAGCAGGTCAGCAAGCCGATAGCCAACGTGATTAAG
TCCAATGCCAAATCGAGCCCCTTCTTCAGGAAGTACATATGCATGCCGCC
CGCACAGTTCTACAACTGGGTAGAGGTGAAGACCAAGATGTGGGCCCTGA
ACATGGGTGGTCGCGTTAATGTTCCACCGCTGAACGAGGCGATGGCCATT
GAGCTGGGAGCCAATCTGCTTGGCGAGTTCATCATCTTCTCGATCGGAGC
CGGTCTTTTGATTTTCGAGTACTCACGTCAAACCATCAAGGAGAACAAGA
AAAACGAGTTGGCGCAATCGGAGAAGATGGAACTAACCAATATGCTGACG
GAGATGAACTTTCGGCTGGAGCGACAGGATGCCCAGATACGAGAAATGAC
GCGAGTGCTGGCTGATCTAGATTCGCGAAACATTTTCCGGTGGCACAAGG
AGCCGATTCAGGAATACGTGCCCTTCGATCCCGACACGCCGGACCAGAGT
GCCAGCGCCAGGAATCCGAAAAAGTTCGACAGCTTATATGACCCGCAAGG
CGGTATGGCCTTCCGCGCCCTGCACTTCCTGGACACGCAGATCTTCGTGG
ACGGACGCAACCGCAAGGCCAAGGAGGCTCTCCAGCACCTGGATGAGGTG
GCCGTGCAGCTGGAGCAGTCTCTGGGAGAGGCAGCCACCGTTGCCGTTGC
CAGCTCACTGCCTACAAAAGCAGCCGACCTTTGAAAGCTTTCTAGACC
BS06585.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13601-PA | 768 | CG13601-RA | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:44:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13601-RB | 1091 | CG13601-RB | 67..834 | 17..784 | 3840 | 100 | Plus |
CG13601-RA | 1091 | CG13601-RA | 67..834 | 17..784 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:44:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23926629..23926944 | 784..469 | 1580 | 100 | Minus |
3R | 32079331 | 3R | 23927203..23927371 | 327..159 | 845 | 100 | Minus |
3R | 32079331 | 3R | 23926998..23927145 | 474..327 | 725 | 99.3 | Minus |
3R | 32079331 | 3R | 23927427..23927568 | 158..17 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:44:24 has no hits.
BS06585.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:45:53 Download gff for
BS06585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13601-PA | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:26:35 Download gff for
BS06585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13601-PA | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:09:39 Download gff for
BS06585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13601-RA | 67..834 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:13:54 Download gff for
BS06585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13601-RA | 67..834 | 17..784 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:13:54 Download gff for
BS06585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23926629..23926942 | 471..784 | 100 | <- | Minus |
3R | 23927002..23927144 | 328..470 | 100 | <- | Minus |
3R | 23927203..23927371 | 159..327 | 100 | <- | Minus |
3R | 23927427..23927568 | 17..158 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:09:39 Download gff for
BS06585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19752724..19752866 | 328..470 | 100 | <- | Minus |
arm_3R | 19752925..19753093 | 159..327 | 100 | <- | Minus |
arm_3R | 19753149..19753290 | 17..158 | 100 | | Minus |
arm_3R | 19752351..19752664 | 471..784 | 100 | <- | Minus |
BS06585.complete Sequence
800 bp (800 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635550
> BS06585.complete
GAAGTTATCAGTCGACATGGTTATTGGCGTCTTCCCGGCGGCCAAGCTCG
GCATTTTGGCCATCAAGCAGGTCAGCAAGCCGATAGCCAACGTGATTAAG
TCCAATGCCAAATCGAGCCCCTTCTTCAGGAAGTACATATGCATGCCGCC
CGCACAGTTCTACAACTGGGTAGAGGTGAAGACCAAGATGTGGGCCCTGA
ACATGGGTGGTCGCGTTAATGTTCCACCGCTGAACGAGGCGATGGCCATT
GAGCTGGGAGCCAATCTGCTTGGCGAGTTCATCATCTTCTCGATCGGAGC
CGGTCTTTTGATTTTCGAGTACTCACGTCAAACCATCAAGGAGAACAAGA
AAAACGAGTTGGCGCAATCGGAGAAGATGGAACTAACCAATATGCTGACG
GAGATGAACTTTCGGCTGGAGCGACAGGATGCCCAGATACGAGAAATGAC
GCGAGTGCTGGCTGATCTAGATTCGCGAAACATTTTCCGGTGGCACAAGG
AGCCGATTCAGGAATACGTGCCCTTCGATCCCGACACGCCGGACCAGAGT
GCCAGCGCCAGGAATCCGAAAAAGTTCGACAGCTTATATGACCCGCAAGG
CGGTATGGCCTTCCGCGCCCTGCACTTCCTGGACACGCAGATCTTCGTGG
ACGGACGCAACCGCAAGGCCAAGGAGGCTCTCCAGCACCTGGATGAGGTG
GCCGTGCAGCTGGAGCAGTCTCTGGGAGAGGCAGCCACCGTTGCCGTTGC
CAGCTCACTGCCTACAAAAGCAGCCGACCTTTGAAAGCTTTCTAGACCAT
BS06585.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:52:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13601-RB | 834 | CG13601-PB | 1..768 | 17..784 | 3840 | 100 | Plus |
CG13601-RA | 768 | CG13601-PA | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:52:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13601-RB | 1091 | CG13601-RB | 67..834 | 17..784 | 3840 | 100 | Plus |
CG13601-RA | 1091 | CG13601-RA | 67..834 | 17..784 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:52:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23926629..23926944 | 784..469 | 1580 | 100 | Minus |
3R | 32079331 | 3R | 23927203..23927371 | 327..159 | 845 | 100 | Minus |
3R | 32079331 | 3R | 23926998..23927145 | 474..327 | 725 | 99.3 | Minus |
3R | 32079331 | 3R | 23927427..23927568 | 158..17 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:52:16 has no hits.
BS06585.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:28 Download gff for
BS06585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13601-RA | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:46 Download gff for
BS06585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13601-RA | 65..832 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:25:12 Download gff for
BS06585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13601-RA | 67..833 | 17..783 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:28 Download gff for
BS06585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13601-RA | 65..832 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:26 Download gff for
BS06585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13601-RA | 67..833 | 17..783 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:26 Download gff for
BS06585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23926630..23926942 | 471..783 | 100 | <- | Minus |
3R | 23927002..23927144 | 328..470 | 100 | <- | Minus |
3R | 23927203..23927371 | 159..327 | 100 | <- | Minus |
3R | 23927427..23927568 | 17..158 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:25:12 Download gff for
BS06585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19752724..19752866 | 328..470 | 100 | <- | Minus |
arm_3R | 19752925..19753093 | 159..327 | 100 | <- | Minus |
arm_3R | 19753149..19753290 | 17..158 | 100 | | Minus |
arm_3R | 19752352..19752664 | 471..783 | 100 | <- | Minus |
BS06585.pep Sequence
Translation from 16 to 783
> BS06585.pep
MVIGVFPAAKLGILAIKQVSKPIANVIKSNAKSSPFFRKYICMPPAQFYN
WVEVKTKMWALNMGGRVNVPPLNEAMAIELGANLLGEFIIFSIGAGLLIF
EYSRQTIKENKKNELAQSEKMELTNMLTEMNFRLERQDAQIREMTRVLAD
LDSRNIFRWHKEPIQEYVPFDPDTPDQSASARNPKKFDSLYDPQGGMAFR
ALHFLDTQIFVDGRNRKAKEALQHLDEVAVQLEQSLGEAATVAVASSLPT
KAADL*
BS06585.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13601-PA | 255 | CG13601-PA | 1..255 | 1..255 | 1300 | 100 | Plus |
CG13601-PB | 277 | CG13601-PB | 1..255 | 1..255 | 1300 | 100 | Plus |
CG43999-PC | 166 | CR43999-PC | 1..153 | 1..153 | 315 | 38.6 | Plus |
CG43999-PB | 166 | CR43999-PB | 1..153 | 1..153 | 315 | 38.6 | Plus |
CG43998-PD | 153 | CG43998-PD | 1..152 | 1..152 | 264 | 35.5 | Plus |