Clone Sequence Records
BS06586.3prime Sequence
624 bp (623 high quality bases) assembled on 2005-12-03
> BS06586.3prime
ATGGTCTAGAAAGCTTTTACTGGAACTTGCGCGTGGCAGTTCTGGCCTTC
CAGGCCTTGACCAGGTTGTAGGCGAAGTACAGCGTAAATCCGTGCACCTG
GAAGCCCACAAAGCAGAAGGCATACCAGAAGACGCCGTACGGATAACCGC
GCCACACAAAGATGTCTGTCTCGTCCAGCTCCACCGACTTGTCCAGCGTG
GCGAACTCCCACACGTCCGAGAAGTAGTAGGCGAAGCAGTAGAAGAGTGG
CAGGATGGCGAATAGCAGTATGGCCACCATATACTTCTGCATTTCGCGCA
CCTTGTTGCCCCTGGCGGCCGAAAGGCCCAGGAAGGAGGTGAGCAACGAC
GCGGCCCACACGTACTCCCACCACAGGGGCGGTGGGACCTCCAGCTCCTC
GATCTCCAGCACAAAGATATCCAGGTGGTCCAGAATGTCCGACGTCAGCT
TGGCCAGCATCACGAAGAACAGCAGGGCGTGAAAGAAGATGCAGTACTTC
AACCTGGACTTGTTCAGCAGGCTAATTTGATATGTGCCAGCTACGCGCTG
CCTGAACTCGAAGTCGTTGCCATCGGTGCCCGCGACCATTGGTCCGCCGC
GCGTTGCCATGTCGACTGATAACT
BS06586.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10978-PB | 594 | jagn-RB | 1..594 | 610..17 | 2970 | 100 | Minus |
CG10978-PA | 594 | jagn-RA | 1..594 | 610..17 | 2970 | 100 | Minus |
CG10978-PC | 276 | jagn-RC | 1..276 | 292..17 | 1380 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:08:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jagn-RA | 1104 | CG10978-RA | 110..707 | 614..17 | 2975 | 99.8 | Minus |
jagn-RB | 1649 | CG10978-RB | 110..707 | 614..17 | 2975 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:08:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5779796..5780173 | 525..148 | 1890 | 100 | Minus |
3R | 32079331 | 3R | 5780235..5780366 | 148..17 | 660 | 100 | Minus |
3R | 32079331 | 3R | 5779424..5779516 | 614..522 | 450 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:08:32 has no hits.
BS06586.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:45:54 Download gff for
BS06586.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jagn-PB | 1..594 | 17..610 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:26:36 Download gff for
BS06586.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10978-PA | 1..594 | 17..610 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:14:16 Download gff for
BS06586.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jagn-RB | 107..710 | 12..618 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:28:31 Download gff for
BS06586.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jagn-RB | 107..710 | 12..618 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:28:31 Download gff for
BS06586.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5779421..5779516 | 522..618 | 96 | -> | Minus |
3R | 5779800..5780172 | 149..521 | 100 | -> | Minus |
3R | 5780235..5780369 | 12..148 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:14:16 Download gff for
BS06586.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1605143..1605238 | 522..618 | 96 | -> | Minus |
arm_3R | 1605522..1605894 | 149..521 | 100 | -> | Minus |
arm_3R | 1605957..1606091 | 12..148 | 97 | | Minus |
BS06586.5prime Sequence
624 bp (623 high quality bases) assembled on 2005-12-03
> BS06586.5prime
GAAGTTATCAGTCGACATGGCAACGCGCGGCGGACCAATGGTCGCGGGCA
CCGATGGCAACGACTTCGAGTTCAGGCAGCGCGTAGCTGGCACATATCAA
ATTAGCCTGCTGAACAAGTCCAGGTTGAAGTACTGCATCTTCTTTCACGC
CCTGCTGTTCTTCGTGATGCTGGCCAAGCTGACGTCGGACATTCTGGACC
ACCTGGATATCTTTGTGCTGGAGATCGAGGAGCTGGAGGTCCCACCGCCC
CTGTGGTGGGAGTACGTGTGGGCCGCGTCGTTGCTCACCTCCTTCCTGGG
CCTTTCGGCCGCCAGGGGCAACAAGGTGCGCGAAATGCAGAAGTATATGG
TGGCCATACTGCTATTCGCCATCCTGCCACTCTTCTACTGCTTCGCCTAC
TACTTCTCGGACGTGTGGGAGTTCGCCACGCTGGACAAGTCGGTGGAGCT
GGACGAGACAGACATCTTTGTGTGGCGCGGTTATCCGTACGGCGTCTTCT
GGTATGCCTTCTGCTTTGTGGGCTTCCAGGTGCACGGATTTACGCTGTAC
TTCGCCTACAACCTGGTCAAGGCCTGGAAGGCCAGAACTGCCACGCGCAA
GTTCCAGTAAAAGCTTTCTAGACC
BS06586.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10978-PB | 594 | jagn-RB | 1..594 | 17..610 | 2970 | 100 | Plus |
CG10978-PA | 594 | jagn-RA | 1..594 | 17..610 | 2970 | 100 | Plus |
CG10978-PC | 276 | jagn-RC | 1..276 | 335..610 | 1380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:04:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jagn-RA | 1104 | CG10978-RA | 110..707 | 13..610 | 2975 | 99.8 | Plus |
jagn-RB | 1649 | CG10978-RB | 110..707 | 13..610 | 2975 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:04:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5779796..5780173 | 102..479 | 1890 | 100 | Plus |
3R | 32079331 | 3R | 5780235..5780366 | 479..610 | 660 | 100 | Plus |
3R | 32079331 | 3R | 5779424..5779516 | 13..105 | 450 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:04:25 has no hits.
BS06586.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:45:55 Download gff for
BS06586.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jagn-PB | 1..594 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:26:38 Download gff for
BS06586.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10978-PA | 1..594 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:30:53 Download gff for
BS06586.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jagn-RB | 107..710 | 9..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:02:17 Download gff for
BS06586.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jagn-RB | 107..710 | 9..615 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:02:17 Download gff for
BS06586.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5780235..5780369 | 479..615 | 97 | | Plus |
3R | 5779421..5779516 | 9..105 | 96 | -> | Plus |
3R | 5779800..5780172 | 106..478 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:30:53 Download gff for
BS06586.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1605143..1605238 | 9..105 | 96 | -> | Plus |
arm_3R | 1605522..1605894 | 106..478 | 100 | -> | Plus |
arm_3R | 1605957..1606091 | 479..615 | 97 | | Plus |
BS06586.complete Sequence
626 bp (626 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635551
> BS06586.complete
GAAGTTATCAGTCGACATGGCAACGCGCGGCGGACCAATGGTCGCGGGCA
CCGATGGCAACGACTTCGAGTTCAGGCAGCGCGTAGCTGGCACATATCAA
ATTAGCCTGCTGAACAAGTCCAGGTTGAAGTACTGCATCTTCTTTCACGC
CCTGCTGTTCTTCGTGATGCTGGCCAAGCTGACGTCGGACATTCTGGACC
ACCTGGATATCTTTGTGCTGGAGATCGAGGAGCTGGAGGTCCCACCGCCC
CTGTGGTGGGAGTACGTGTGGGCCGCGTCGTTGCTCACCTCCTTCCTGGG
CCTTTCGGCCGCCAGGGGCAACAAGGTGCGCGAAATGCAGAAGTATATGG
TGGCCATACTGCTATTCGCCATCCTGCCACTCTTCTACTGCTTCGCCTAC
TACTTCTCGGACGTGTGGGAGTTCGCCACGCTGGACAAGTCGGTGGAGCT
GGACGAGACAGACATCTTTGTGTGGCGCGGTTATCCGTACGGCGTCTTCT
GGTATGCCTTCTGCTTTGTGGGCTTCCAGGTGCACGGATTTACGCTGTAC
TTCGCCTACAACCTGGTCAAGGCCTGGAAGGCCAGAACTGCCACGCGCAA
GTTCCAGTAAAAGCTTTCTAGACCAT
BS06586.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:06:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jagn-RA | 594 | CG10978-PA | 1..594 | 17..610 | 2970 | 100 | Plus |
jagn-RB | 594 | CG10978-PB | 1..594 | 17..610 | 2970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:06:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jagn-RA | 1104 | CG10978-RA | 110..707 | 13..610 | 2975 | 99.8 | Plus |
jagn-RB | 1649 | CG10978-RB | 110..707 | 13..610 | 2975 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:06:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5779796..5780173 | 102..479 | 1890 | 100 | Plus |
3R | 32079331 | 3R | 5780235..5780366 | 479..610 | 660 | 100 | Plus |
3R | 32079331 | 3R | 5779424..5779516 | 13..105 | 450 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:06:51 has no hits.
BS06586.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:53 Download gff for
BS06586.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jagn-RA | 1..594 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:46 Download gff for
BS06586.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jagn-RA | 113..716 | 9..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:03 Download gff for
BS06586.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jagn-RB | 114..705 | 17..608 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:53 Download gff for
BS06586.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jagn-RA | 113..716 | 9..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:22 Download gff for
BS06586.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jagn-RB | 114..705 | 17..608 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:13:22 Download gff for
BS06586.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5779428..5779516 | 17..105 | 100 | -> | Plus |
3R | 5779800..5780172 | 106..478 | 100 | -> | Plus |
3R | 5780235..5780364 | 479..608 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:03 Download gff for
BS06586.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1605150..1605238 | 17..105 | 100 | -> | Plus |
arm_3R | 1605522..1605894 | 106..478 | 100 | -> | Plus |
arm_3R | 1605957..1606086 | 479..608 | 100 | | Plus |
BS06586.pep Sequence
Translation from 16 to 609
> BS06586.pep
MATRGGPMVAGTDGNDFEFRQRVAGTYQISLLNKSRLKYCIFFHALLFFV
MLAKLTSDILDHLDIFVLEIEELEVPPPLWWEYVWAASLLTSFLGLSAAR
GNKVREMQKYMVAILLFAILPLFYCFAYYFSDVWEFATLDKSVELDETDI
FVWRGYPYGVFWYAFCFVGFQVHGFTLYFAYNLVKAWKARTATRKFQ*
BS06586.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jagn-PA | 197 | CG10978-PA | 1..197 | 1..197 | 1056 | 100 | Plus |
jagn-PB | 197 | CG10978-PB | 1..197 | 1..197 | 1056 | 100 | Plus |