Clone BS06586 Report

Search the DGRC for BS06586

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:65
Well:86
Vector:pDNR-Dual
Associated Gene/Transcriptjagn-RA
Protein status:BS06586.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06586.3prime Sequence

624 bp (623 high quality bases) assembled on 2005-12-03

> BS06586.3prime
ATGGTCTAGAAAGCTTTTACTGGAACTTGCGCGTGGCAGTTCTGGCCTTC
CAGGCCTTGACCAGGTTGTAGGCGAAGTACAGCGTAAATCCGTGCACCTG
GAAGCCCACAAAGCAGAAGGCATACCAGAAGACGCCGTACGGATAACCGC
GCCACACAAAGATGTCTGTCTCGTCCAGCTCCACCGACTTGTCCAGCGTG
GCGAACTCCCACACGTCCGAGAAGTAGTAGGCGAAGCAGTAGAAGAGTGG
CAGGATGGCGAATAGCAGTATGGCCACCATATACTTCTGCATTTCGCGCA
CCTTGTTGCCCCTGGCGGCCGAAAGGCCCAGGAAGGAGGTGAGCAACGAC
GCGGCCCACACGTACTCCCACCACAGGGGCGGTGGGACCTCCAGCTCCTC
GATCTCCAGCACAAAGATATCCAGGTGGTCCAGAATGTCCGACGTCAGCT
TGGCCAGCATCACGAAGAACAGCAGGGCGTGAAAGAAGATGCAGTACTTC
AACCTGGACTTGTTCAGCAGGCTAATTTGATATGTGCCAGCTACGCGCTG
CCTGAACTCGAAGTCGTTGCCATCGGTGCCCGCGACCATTGGTCCGCCGC
GCGTTGCCATGTCGACTGATAACT

BS06586.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG10978-PB 594 jagn-RB 1..594 610..17 2970 100 Minus
CG10978-PA 594 jagn-RA 1..594 610..17 2970 100 Minus
CG10978-PC 276 jagn-RC 1..276 292..17 1380 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
jagn-RA 1104 CG10978-RA 110..707 614..17 2975 99.8 Minus
jagn-RB 1649 CG10978-RB 110..707 614..17 2975 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5779796..5780173 525..148 1890 100 Minus
3R 32079331 3R 5780235..5780366 148..17 660 100 Minus
3R 32079331 3R 5779424..5779516 614..522 450 98.9 Minus
Blast to na_te.dros performed on 2015-02-10 19:08:32 has no hits.

BS06586.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:45:54 Download gff for BS06586.3prime
Subject Subject Range Query Range Percent Splice Strand
jagn-PB 1..594 17..610 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:26:36 Download gff for BS06586.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10978-PA 1..594 17..610 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:14:16 Download gff for BS06586.3prime
Subject Subject Range Query Range Percent Splice Strand
jagn-RB 107..710 12..618 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:28:31 Download gff for BS06586.3prime
Subject Subject Range Query Range Percent Splice Strand
jagn-RB 107..710 12..618 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:28:31 Download gff for BS06586.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5779421..5779516 522..618 96 -> Minus
3R 5779800..5780172 149..521 100 -> Minus
3R 5780235..5780369 12..148 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:14:16 Download gff for BS06586.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1605143..1605238 522..618 96 -> Minus
arm_3R 1605522..1605894 149..521 100 -> Minus
arm_3R 1605957..1606091 12..148 97   Minus

BS06586.5prime Sequence

624 bp (623 high quality bases) assembled on 2005-12-03

> BS06586.5prime
GAAGTTATCAGTCGACATGGCAACGCGCGGCGGACCAATGGTCGCGGGCA
CCGATGGCAACGACTTCGAGTTCAGGCAGCGCGTAGCTGGCACATATCAA
ATTAGCCTGCTGAACAAGTCCAGGTTGAAGTACTGCATCTTCTTTCACGC
CCTGCTGTTCTTCGTGATGCTGGCCAAGCTGACGTCGGACATTCTGGACC
ACCTGGATATCTTTGTGCTGGAGATCGAGGAGCTGGAGGTCCCACCGCCC
CTGTGGTGGGAGTACGTGTGGGCCGCGTCGTTGCTCACCTCCTTCCTGGG
CCTTTCGGCCGCCAGGGGCAACAAGGTGCGCGAAATGCAGAAGTATATGG
TGGCCATACTGCTATTCGCCATCCTGCCACTCTTCTACTGCTTCGCCTAC
TACTTCTCGGACGTGTGGGAGTTCGCCACGCTGGACAAGTCGGTGGAGCT
GGACGAGACAGACATCTTTGTGTGGCGCGGTTATCCGTACGGCGTCTTCT
GGTATGCCTTCTGCTTTGTGGGCTTCCAGGTGCACGGATTTACGCTGTAC
TTCGCCTACAACCTGGTCAAGGCCTGGAAGGCCAGAACTGCCACGCGCAA
GTTCCAGTAAAAGCTTTCTAGACC

BS06586.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG10978-PB 594 jagn-RB 1..594 17..610 2970 100 Plus
CG10978-PA 594 jagn-RA 1..594 17..610 2970 100 Plus
CG10978-PC 276 jagn-RC 1..276 335..610 1380 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:04:29
Subject Length Description Subject Range Query Range Score Percent Strand
jagn-RA 1104 CG10978-RA 110..707 13..610 2975 99.8 Plus
jagn-RB 1649 CG10978-RB 110..707 13..610 2975 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:04:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5779796..5780173 102..479 1890 100 Plus
3R 32079331 3R 5780235..5780366 479..610 660 100 Plus
3R 32079331 3R 5779424..5779516 13..105 450 98.9 Plus
Blast to na_te.dros performed on 2015-02-13 01:04:25 has no hits.

BS06586.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:45:55 Download gff for BS06586.5prime
Subject Subject Range Query Range Percent Splice Strand
jagn-PB 1..594 17..610 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:26:38 Download gff for BS06586.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10978-PA 1..594 17..610 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:30:53 Download gff for BS06586.5prime
Subject Subject Range Query Range Percent Splice Strand
jagn-RB 107..710 9..615 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:02:17 Download gff for BS06586.5prime
Subject Subject Range Query Range Percent Splice Strand
jagn-RB 107..710 9..615 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:02:17 Download gff for BS06586.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5780235..5780369 479..615 97   Plus
3R 5779421..5779516 9..105 96 -> Plus
3R 5779800..5780172 106..478 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:30:53 Download gff for BS06586.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1605143..1605238 9..105 96 -> Plus
arm_3R 1605522..1605894 106..478 100 -> Plus
arm_3R 1605957..1606091 479..615 97   Plus

BS06586.complete Sequence

626 bp (626 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635551

> BS06586.complete
GAAGTTATCAGTCGACATGGCAACGCGCGGCGGACCAATGGTCGCGGGCA
CCGATGGCAACGACTTCGAGTTCAGGCAGCGCGTAGCTGGCACATATCAA
ATTAGCCTGCTGAACAAGTCCAGGTTGAAGTACTGCATCTTCTTTCACGC
CCTGCTGTTCTTCGTGATGCTGGCCAAGCTGACGTCGGACATTCTGGACC
ACCTGGATATCTTTGTGCTGGAGATCGAGGAGCTGGAGGTCCCACCGCCC
CTGTGGTGGGAGTACGTGTGGGCCGCGTCGTTGCTCACCTCCTTCCTGGG
CCTTTCGGCCGCCAGGGGCAACAAGGTGCGCGAAATGCAGAAGTATATGG
TGGCCATACTGCTATTCGCCATCCTGCCACTCTTCTACTGCTTCGCCTAC
TACTTCTCGGACGTGTGGGAGTTCGCCACGCTGGACAAGTCGGTGGAGCT
GGACGAGACAGACATCTTTGTGTGGCGCGGTTATCCGTACGGCGTCTTCT
GGTATGCCTTCTGCTTTGTGGGCTTCCAGGTGCACGGATTTACGCTGTAC
TTCGCCTACAACCTGGTCAAGGCCTGGAAGGCCAGAACTGCCACGCGCAA
GTTCCAGTAAAAGCTTTCTAGACCAT

BS06586.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
jagn-RA 594 CG10978-PA 1..594 17..610 2970 100 Plus
jagn-RB 594 CG10978-PB 1..594 17..610 2970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:06:53
Subject Length Description Subject Range Query Range Score Percent Strand
jagn-RA 1104 CG10978-RA 110..707 13..610 2975 99.8 Plus
jagn-RB 1649 CG10978-RB 110..707 13..610 2975 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5779796..5780173 102..479 1890 100 Plus
3R 32079331 3R 5780235..5780366 479..610 660 100 Plus
3R 32079331 3R 5779424..5779516 13..105 450 98.9 Plus
Blast to na_te.dros performed on 2014-11-27 10:06:51 has no hits.

BS06586.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:53 Download gff for BS06586.complete
Subject Subject Range Query Range Percent Splice Strand
jagn-RA 1..594 17..610 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:46 Download gff for BS06586.complete
Subject Subject Range Query Range Percent Splice Strand
jagn-RA 113..716 9..615 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:03 Download gff for BS06586.complete
Subject Subject Range Query Range Percent Splice Strand
jagn-RB 114..705 17..608 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:53 Download gff for BS06586.complete
Subject Subject Range Query Range Percent Splice Strand
jagn-RA 113..716 9..615 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:22 Download gff for BS06586.complete
Subject Subject Range Query Range Percent Splice Strand
jagn-RB 114..705 17..608 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:13:22 Download gff for BS06586.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5779428..5779516 17..105 100 -> Plus
3R 5779800..5780172 106..478 100 -> Plus
3R 5780235..5780364 479..608 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:03 Download gff for BS06586.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1605150..1605238 17..105 100 -> Plus
arm_3R 1605522..1605894 106..478 100 -> Plus
arm_3R 1605957..1606086 479..608 100   Plus

BS06586.pep Sequence

Translation from 16 to 609

> BS06586.pep
MATRGGPMVAGTDGNDFEFRQRVAGTYQISLLNKSRLKYCIFFHALLFFV
MLAKLTSDILDHLDIFVLEIEELEVPPPLWWEYVWAASLLTSFLGLSAAR
GNKVREMQKYMVAILLFAILPLFYCFAYYFSDVWEFATLDKSVELDETDI
FVWRGYPYGVFWYAFCFVGFQVHGFTLYFAYNLVKAWKARTATRKFQ*

BS06586.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
jagn-PA 197 CG10978-PA 1..197 1..197 1056 100 Plus
jagn-PB 197 CG10978-PB 1..197 1..197 1056 100 Plus