Clone BS06587 Report

Search the DGRC for BS06587

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:65
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCdk1-RA
Protein status:BS06587.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06587.3prime Sequence

924 bp (835 high quality bases) assembled on 2005-12-03

> BS06587.3prime
ATGGTCTAGAAAGCTTTTAATTTCGAACTAAGCCCGATTGAAAACCATTG
AAATAGGGATGCTCCAAAATGTCCTTGGCGGAAATGCGATGAACTGGATC
GTAGATTAACATCTTTTGTATGAGATCAATACCATTCGCATCGAGATTCT
TTAACTGATTGGTCAATTGGTTCGTGGACCAGCAGGGGAACGTGTTCTTA
TAGTCGGGTAGCGAAGTAACGCCCGGCCAAATGTCTTCGGTAGGTGTTTT
CAGAATTCTAAACATTCTAAACAACTGGTCAATTTCCGAGTCACCCTGGA
ATAGCGGCTTTCTCGTTGCCATCTCCGCGAATATGCATCCAATGGACCAG
ATATCGACGGGACAGGAATACCGGGGTGAACCCAGTAGCACCTCCGGCGC
TCTGTACCACAAGGTAACAATCTCGTGCGTATAAATGCGCACCGGAATGC
CAAAGGATCGGCCAAGTCCAAAGTCGGCGACTTTTATGAGGCCACTCTTG
TCGATTAGTAAGTTCTGCGGCTTAAGATCACGGTGAAGTACTCGCCGACG
ATGGCAGAAAAGAATGGCGCTAGTTATTTGGTACAAATAGCTACGGACCA
ATTCACTCTCCATGTGCTTATCAACTGGCAGCGAATCCATGTATTTCTTG
AGGTCCATCGATAGGAATTCAAAGATCAAGTATATGCGGTTCTCCTCCAT
CAAAACATCCTCCAAACAGACAATGTTTTCATGTTTCAACTCCTTAAGCA
ACGAAATTTCTCTGATCGCGGTTGATGGAACGCCTTCGTCGTCGGACTCC
AAGCGGATTTTCTTCATTGCCACAATTTGGCCCGTCAGGCGGTTGCGACC
CTTATACACCACGCCATATGTGCCCTCGCCAATCTTCTCAATTTTCTCAA
AATCCTCCATGTCGACTGATAACT

BS06587.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5363-PA 894 cdc2-RA 1..894 910..17 4470 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:26:26
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk1-RA 1082 CG5363-RA 86..979 910..17 4470 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10385140..10385646 258..764 2535 100 Plus
2L 23513712 2L 10384842..10385084 17..259 1215 100 Plus
2L 23513712 2L 10386029..10386177 762..910 745 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:26:24 has no hits.

BS06587.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:45:56 Download gff for BS06587.3prime
Subject Subject Range Query Range Percent Splice Strand
cdc2-PA 1..894 17..910 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:26:39 Download gff for BS06587.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5363-PA 1..894 17..910 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:04:55 Download gff for BS06587.3prime
Subject Subject Range Query Range Percent Splice Strand
cdc2-RA 86..983 11..910 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:43 Download gff for BS06587.3prime
Subject Subject Range Query Range Percent Splice Strand
Cdk1-RA 86..983 11..910 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:43 Download gff for BS06587.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10384838..10385082 11..257 98 <- Plus
2L 10385140..10385643 258..761 100 <- Plus
2L 10386029..10386177 762..910 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:04:55 Download gff for BS06587.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10384838..10385082 11..257 98 <- Plus
arm_2L 10385140..10385643 258..761 100 <- Plus
arm_2L 10386029..10386177 762..910 100   Plus

BS06587.5prime Sequence

806 bp (805 high quality bases) assembled on 2005-12-03

> BS06587.5prime
GAAGTTATCAGTCGACATGGAGGATTTTGAGAAAATTGAGAAGATTGGCG
AGGGCACATATGGCGTGGTGTATAAGGGTCGCAACCGCCTGACGGGCCAA
ATTGTGGCAATGAAGAAAATCCGCTTGGAGTCCGACGACGAAGGCGTTCC
ATCAACCGCGATCAGAGAAATTTCGTTGCTTAAGGAGTTGAAACATGAAA
ACATTGTCTGTTTGGAGGATGTTTTGATGGAGGAGAACCGCATATACTTG
ATCTTTGAATTCCTATCGATGGACCTCAAGAAATACATGGATTCGCTGCC
AGTTGATAAGCACATGGAGAGTGAATTGGTCCGTAGCTATTTGTACCAAA
TAACTAGCGCCATTCTTTTCTGCCATCGTCGGCGAGTACTTCACCGTGAT
CTTAAGCCGCAGAACTTACTAATCGACAAGAGTGGCCTCATAAAAGTCGC
CGACTTTGGACTTGGCCGATCCTTTGGCATTCCGGTGCGCATTTATACGC
ACGAGATTGTTACCTTGTGGTACAGAGCGCCGGAGGTGCTACTGGGTTCA
CCCCGGTATTCCTGTCCCGTCGATATCTGGTCCATTGGATGCATATTCGC
GGAGATGGCAACGAGAAAGCCGCTATTCCAGGGTGACTCGGAAATTGACC
AGTTGTTTAGAATGTTTAGAATTCTGAAAACACCTACCGAAGACATTTGG
CCGGGCGTTACTTCGCTACCCGACTATAAGAACACGTTCCCCTGCTGGTC
CACGAACCAATTGACCAATCAGTTAAAGAATCTCGATGCGAATGGTATTG
ATCTCA

BS06587.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5363-PA 894 cdc2-RA 1..790 17..806 3950 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk1-RA 1082 CG5363-RA 86..875 17..806 3950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10385140..10385646 669..163 2535 100 Minus
2L 23513712 2L 10386029..10386177 165..17 745 100 Minus
2L 23513712 2L 10384946..10385084 806..668 695 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:23:34 has no hits.

BS06587.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:45:57 Download gff for BS06587.5prime
Subject Subject Range Query Range Percent Splice Strand
cdc2-PA 1..789 17..805 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:26:40 Download gff for BS06587.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5363-PA 1..789 17..805 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:38:41 Download gff for BS06587.5prime
Subject Subject Range Query Range Percent Splice Strand
cdc2-RA 86..874 17..805 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:23 Download gff for BS06587.5prime
Subject Subject Range Query Range Percent Splice Strand
Cdk1-RA 86..874 17..805 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:23 Download gff for BS06587.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10384947..10385082 670..805 100 <- Minus
2L 10385140..10385643 166..669 100 <- Minus
2L 10386029..10386177 17..165 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:38:41 Download gff for BS06587.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10384947..10385082 670..805 100 <- Minus
arm_2L 10385140..10385643 166..669 100 <- Minus
arm_2L 10386029..10386177 17..165 100   Minus

BS06587.complete Sequence

926 bp (926 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635552

> BS06587.complete
GAAGTTATCAGTCGACATGGAGGATTTTGAGAAAATTGAGAAGATTGGCG
AGGGCACATATGGCGTGGTGTATAAGGGTCGCAACCGCCTGACGGGCCAA
ATTGTGGCAATGAAGAAAATCCGCTTGGAGTCCGACGACGAAGGCGTTCC
ATCAACCGCGATCAGAGAAATTTCGTTGCTTAAGGAGTTGAAACATGAAA
ACATTGTCTGTTTGGAGGATGTTTTGATGGAGGAGAACCGCATATACTTG
ATCTTTGAATTCCTATCGATGGACCTCAAGAAATACATGGATTCGCTGCC
AGTTGATAAGCACATGGAGAGTGAATTGGTCCGTAGCTATTTGTACCAAA
TAACTAGCGCCATTCTTTTCTGCCATCGTCGGCGAGTACTTCACCGTGAT
CTTAAGCCGCAGAACTTACTAATCGACAAGAGTGGCCTCATAAAAGTCGC
CGACTTTGGACTTGGCCGATCCTTTGGCATTCCGGTGCGCATTTATACGC
ACGAGATTGTTACCTTGTGGTACAGAGCGCCGGAGGTGCTACTGGGTTCA
CCCCGGTATTCCTGTCCCGTCGATATCTGGTCCATTGGATGCATATTCGC
GGAGATGGCAACGAGAAAGCCGCTATTCCAGGGTGACTCGGAAATTGACC
AGTTGTTTAGAATGTTTAGAATTCTGAAAACACCTACCGAAGACATTTGG
CCGGGCGTTACTTCGCTACCCGACTATAAGAACACGTTCCCCTGCTGGTC
CACGAACCAATTGACCAATCAGTTAAAGAATCTCGATGCGAATGGTATTG
ATCTCATACAAAAGATGTTAATCTACGATCCAGTTCATCGCATTTCCGCC
AAGGACATTTTGGAGCATCCCTATTTCAATGGTTTTCAATCGGGCTTAGT
TCGAAATTAAAAGCTTTCTAGACCAT

BS06587.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:06:19
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk1-RA 894 CG5363-PA 1..894 17..910 4470 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk1-RA 1082 CG5363-RA 86..979 17..910 4470 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10385140..10385646 669..163 2535 100 Minus
2L 23513712 2L 10384842..10385084 910..668 1215 100 Minus
2L 23513712 2L 10386029..10386177 165..17 745 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:06:18 has no hits.

BS06587.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:18 Download gff for BS06587.complete
Subject Subject Range Query Range Percent Splice Strand
cdc2-RA 1..894 17..910 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:34 Download gff for BS06587.complete
Subject Subject Range Query Range Percent Splice Strand
cdc2-RA 87..984 17..916 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:42 Download gff for BS06587.complete
Subject Subject Range Query Range Percent Splice Strand
cdc2-RA 86..977 17..908 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:18 Download gff for BS06587.complete
Subject Subject Range Query Range Percent Splice Strand
cdc2-RA 87..984 17..916 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:08 Download gff for BS06587.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk1-RA 86..977 17..908 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:13:08 Download gff for BS06587.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10384844..10385082 670..908 100 <- Minus
2L 10385140..10385643 166..669 100 <- Minus
2L 10386029..10386177 17..165 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:42 Download gff for BS06587.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10384844..10385082 670..908 100 <- Minus
arm_2L 10385140..10385643 166..669 100 <- Minus
arm_2L 10386029..10386177 17..165 100   Minus

BS06587.pep Sequence

Translation from 16 to 909

> BS06587.pep
MEDFEKIEKIGEGTYGVVYKGRNRLTGQIVAMKKIRLESDDEGVPSTAIR
EISLLKELKHENIVCLEDVLMEENRIYLIFEFLSMDLKKYMDSLPVDKHM
ESELVRSYLYQITSAILFCHRRRVLHRDLKPQNLLIDKSGLIKVADFGLG
RSFGIPVRIYTHEIVTLWYRAPEVLLGSPRYSCPVDIWSIGCIFAEMATR
KPLFQGDSEIDQLFRMFRILKTPTEDIWPGVTSLPDYKNTFPCWSTNQLT
NQLKNLDANGIDLIQKMLIYDPVHRISAKDILEHPYFNGFQSGLVRN*

BS06587.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk1-PA 297 CG5363-PA 1..297 1..297 1557 100 Plus
Cdk2-PC 314 CG10498-PC 5..291 1..291 913 59.5 Plus
Cdk2-PB 314 CG10498-PB 5..291 1..291 913 59.5 Plus
Cdk2-PA 314 CG10498-PA 5..291 1..291 913 59.5 Plus
Cdk5-PA 294 CG8203-PA 1..291 1..292 799 52.6 Plus