Clone Sequence Records
BS06587.3prime Sequence
924 bp (835 high quality bases) assembled on 2005-12-03
> BS06587.3prime
ATGGTCTAGAAAGCTTTTAATTTCGAACTAAGCCCGATTGAAAACCATTG
AAATAGGGATGCTCCAAAATGTCCTTGGCGGAAATGCGATGAACTGGATC
GTAGATTAACATCTTTTGTATGAGATCAATACCATTCGCATCGAGATTCT
TTAACTGATTGGTCAATTGGTTCGTGGACCAGCAGGGGAACGTGTTCTTA
TAGTCGGGTAGCGAAGTAACGCCCGGCCAAATGTCTTCGGTAGGTGTTTT
CAGAATTCTAAACATTCTAAACAACTGGTCAATTTCCGAGTCACCCTGGA
ATAGCGGCTTTCTCGTTGCCATCTCCGCGAATATGCATCCAATGGACCAG
ATATCGACGGGACAGGAATACCGGGGTGAACCCAGTAGCACCTCCGGCGC
TCTGTACCACAAGGTAACAATCTCGTGCGTATAAATGCGCACCGGAATGC
CAAAGGATCGGCCAAGTCCAAAGTCGGCGACTTTTATGAGGCCACTCTTG
TCGATTAGTAAGTTCTGCGGCTTAAGATCACGGTGAAGTACTCGCCGACG
ATGGCAGAAAAGAATGGCGCTAGTTATTTGGTACAAATAGCTACGGACCA
ATTCACTCTCCATGTGCTTATCAACTGGCAGCGAATCCATGTATTTCTTG
AGGTCCATCGATAGGAATTCAAAGATCAAGTATATGCGGTTCTCCTCCAT
CAAAACATCCTCCAAACAGACAATGTTTTCATGTTTCAACTCCTTAAGCA
ACGAAATTTCTCTGATCGCGGTTGATGGAACGCCTTCGTCGTCGGACTCC
AAGCGGATTTTCTTCATTGCCACAATTTGGCCCGTCAGGCGGTTGCGACC
CTTATACACCACGCCATATGTGCCCTCGCCAATCTTCTCAATTTTCTCAA
AATCCTCCATGTCGACTGATAACT
BS06587.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5363-PA | 894 | cdc2-RA | 1..894 | 910..17 | 4470 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:26:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk1-RA | 1082 | CG5363-RA | 86..979 | 910..17 | 4470 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:26:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10385140..10385646 | 258..764 | 2535 | 100 | Plus |
2L | 23513712 | 2L | 10384842..10385084 | 17..259 | 1215 | 100 | Plus |
2L | 23513712 | 2L | 10386029..10386177 | 762..910 | 745 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:26:24 has no hits.
BS06587.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:45:56 Download gff for
BS06587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cdc2-PA | 1..894 | 17..910 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:26:39 Download gff for
BS06587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5363-PA | 1..894 | 17..910 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:04:55 Download gff for
BS06587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cdc2-RA | 86..983 | 11..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:43 Download gff for
BS06587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk1-RA | 86..983 | 11..910 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:43 Download gff for
BS06587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10384838..10385082 | 11..257 | 98 | <- | Plus |
2L | 10385140..10385643 | 258..761 | 100 | <- | Plus |
2L | 10386029..10386177 | 762..910 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:04:55 Download gff for
BS06587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10384838..10385082 | 11..257 | 98 | <- | Plus |
arm_2L | 10385140..10385643 | 258..761 | 100 | <- | Plus |
arm_2L | 10386029..10386177 | 762..910 | 100 | | Plus |
BS06587.5prime Sequence
806 bp (805 high quality bases) assembled on 2005-12-03
> BS06587.5prime
GAAGTTATCAGTCGACATGGAGGATTTTGAGAAAATTGAGAAGATTGGCG
AGGGCACATATGGCGTGGTGTATAAGGGTCGCAACCGCCTGACGGGCCAA
ATTGTGGCAATGAAGAAAATCCGCTTGGAGTCCGACGACGAAGGCGTTCC
ATCAACCGCGATCAGAGAAATTTCGTTGCTTAAGGAGTTGAAACATGAAA
ACATTGTCTGTTTGGAGGATGTTTTGATGGAGGAGAACCGCATATACTTG
ATCTTTGAATTCCTATCGATGGACCTCAAGAAATACATGGATTCGCTGCC
AGTTGATAAGCACATGGAGAGTGAATTGGTCCGTAGCTATTTGTACCAAA
TAACTAGCGCCATTCTTTTCTGCCATCGTCGGCGAGTACTTCACCGTGAT
CTTAAGCCGCAGAACTTACTAATCGACAAGAGTGGCCTCATAAAAGTCGC
CGACTTTGGACTTGGCCGATCCTTTGGCATTCCGGTGCGCATTTATACGC
ACGAGATTGTTACCTTGTGGTACAGAGCGCCGGAGGTGCTACTGGGTTCA
CCCCGGTATTCCTGTCCCGTCGATATCTGGTCCATTGGATGCATATTCGC
GGAGATGGCAACGAGAAAGCCGCTATTCCAGGGTGACTCGGAAATTGACC
AGTTGTTTAGAATGTTTAGAATTCTGAAAACACCTACCGAAGACATTTGG
CCGGGCGTTACTTCGCTACCCGACTATAAGAACACGTTCCCCTGCTGGTC
CACGAACCAATTGACCAATCAGTTAAAGAATCTCGATGCGAATGGTATTG
ATCTCA
BS06587.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5363-PA | 894 | cdc2-RA | 1..790 | 17..806 | 3950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:23:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk1-RA | 1082 | CG5363-RA | 86..875 | 17..806 | 3950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:23:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10385140..10385646 | 669..163 | 2535 | 100 | Minus |
2L | 23513712 | 2L | 10386029..10386177 | 165..17 | 745 | 100 | Minus |
2L | 23513712 | 2L | 10384946..10385084 | 806..668 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:23:34 has no hits.
BS06587.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:45:57 Download gff for
BS06587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cdc2-PA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:26:40 Download gff for
BS06587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5363-PA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:38:41 Download gff for
BS06587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cdc2-RA | 86..874 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:23 Download gff for
BS06587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk1-RA | 86..874 | 17..805 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:23 Download gff for
BS06587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10384947..10385082 | 670..805 | 100 | <- | Minus |
2L | 10385140..10385643 | 166..669 | 100 | <- | Minus |
2L | 10386029..10386177 | 17..165 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:38:41 Download gff for
BS06587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10384947..10385082 | 670..805 | 100 | <- | Minus |
arm_2L | 10385140..10385643 | 166..669 | 100 | <- | Minus |
arm_2L | 10386029..10386177 | 17..165 | 100 | | Minus |
BS06587.complete Sequence
926 bp (926 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635552
> BS06587.complete
GAAGTTATCAGTCGACATGGAGGATTTTGAGAAAATTGAGAAGATTGGCG
AGGGCACATATGGCGTGGTGTATAAGGGTCGCAACCGCCTGACGGGCCAA
ATTGTGGCAATGAAGAAAATCCGCTTGGAGTCCGACGACGAAGGCGTTCC
ATCAACCGCGATCAGAGAAATTTCGTTGCTTAAGGAGTTGAAACATGAAA
ACATTGTCTGTTTGGAGGATGTTTTGATGGAGGAGAACCGCATATACTTG
ATCTTTGAATTCCTATCGATGGACCTCAAGAAATACATGGATTCGCTGCC
AGTTGATAAGCACATGGAGAGTGAATTGGTCCGTAGCTATTTGTACCAAA
TAACTAGCGCCATTCTTTTCTGCCATCGTCGGCGAGTACTTCACCGTGAT
CTTAAGCCGCAGAACTTACTAATCGACAAGAGTGGCCTCATAAAAGTCGC
CGACTTTGGACTTGGCCGATCCTTTGGCATTCCGGTGCGCATTTATACGC
ACGAGATTGTTACCTTGTGGTACAGAGCGCCGGAGGTGCTACTGGGTTCA
CCCCGGTATTCCTGTCCCGTCGATATCTGGTCCATTGGATGCATATTCGC
GGAGATGGCAACGAGAAAGCCGCTATTCCAGGGTGACTCGGAAATTGACC
AGTTGTTTAGAATGTTTAGAATTCTGAAAACACCTACCGAAGACATTTGG
CCGGGCGTTACTTCGCTACCCGACTATAAGAACACGTTCCCCTGCTGGTC
CACGAACCAATTGACCAATCAGTTAAAGAATCTCGATGCGAATGGTATTG
ATCTCATACAAAAGATGTTAATCTACGATCCAGTTCATCGCATTTCCGCC
AAGGACATTTTGGAGCATCCCTATTTCAATGGTTTTCAATCGGGCTTAGT
TCGAAATTAAAAGCTTTCTAGACCAT
BS06587.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:06:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk1-RA | 894 | CG5363-PA | 1..894 | 17..910 | 4470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:06:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk1-RA | 1082 | CG5363-RA | 86..979 | 17..910 | 4470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:06:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10385140..10385646 | 669..163 | 2535 | 100 | Minus |
2L | 23513712 | 2L | 10384842..10385084 | 910..668 | 1215 | 100 | Minus |
2L | 23513712 | 2L | 10386029..10386177 | 165..17 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:06:18 has no hits.
BS06587.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:18 Download gff for
BS06587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cdc2-RA | 1..894 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:34 Download gff for
BS06587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cdc2-RA | 87..984 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:42 Download gff for
BS06587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cdc2-RA | 86..977 | 17..908 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:18 Download gff for
BS06587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cdc2-RA | 87..984 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:08 Download gff for
BS06587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk1-RA | 86..977 | 17..908 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:13:08 Download gff for
BS06587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10384844..10385082 | 670..908 | 100 | <- | Minus |
2L | 10385140..10385643 | 166..669 | 100 | <- | Minus |
2L | 10386029..10386177 | 17..165 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:42 Download gff for
BS06587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10384844..10385082 | 670..908 | 100 | <- | Minus |
arm_2L | 10385140..10385643 | 166..669 | 100 | <- | Minus |
arm_2L | 10386029..10386177 | 17..165 | 100 | | Minus |
BS06587.pep Sequence
Translation from 16 to 909
> BS06587.pep
MEDFEKIEKIGEGTYGVVYKGRNRLTGQIVAMKKIRLESDDEGVPSTAIR
EISLLKELKHENIVCLEDVLMEENRIYLIFEFLSMDLKKYMDSLPVDKHM
ESELVRSYLYQITSAILFCHRRRVLHRDLKPQNLLIDKSGLIKVADFGLG
RSFGIPVRIYTHEIVTLWYRAPEVLLGSPRYSCPVDIWSIGCIFAEMATR
KPLFQGDSEIDQLFRMFRILKTPTEDIWPGVTSLPDYKNTFPCWSTNQLT
NQLKNLDANGIDLIQKMLIYDPVHRISAKDILEHPYFNGFQSGLVRN*
BS06587.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk1-PA | 297 | CG5363-PA | 1..297 | 1..297 | 1557 | 100 | Plus |
Cdk2-PC | 314 | CG10498-PC | 5..291 | 1..291 | 913 | 59.5 | Plus |
Cdk2-PB | 314 | CG10498-PB | 5..291 | 1..291 | 913 | 59.5 | Plus |
Cdk2-PA | 314 | CG10498-PA | 5..291 | 1..291 | 913 | 59.5 | Plus |
Cdk5-PA | 294 | CG8203-PA | 1..291 | 1..292 | 799 | 52.6 | Plus |