Clone BS06593 Report

Search the DGRC for BS06593

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:65
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptSclp-RA
Protein status:BS06593.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06593.3prime Sequence

780 bp (779 high quality bases) assembled on 2005-12-03

> BS06593.3prime
ATGGTCTAGAAAGCTTTTACCAGTCGTCTTCGACATCCTTGGAGATCTCA
AGGTGGAAGGGGGTCTTGAAGCTCTGCAGCTTTCGTCGGCAGTTTCTGCT
CAGCGGATTATTCCGAAGATCAACGAGGGCCAAATTGTCACTGGTAATTG
CCTCATCGGTATCAATTTCCAAAATGGCATTGTTCTGGGCATCCAGACTG
GCAAGACTCTGAAGCTTAAAGACTACTTGTGGCAAAACGATAAATGAATT
GTTCGAGATATTCAGCTTGGTTAGCGCAGACAAGCTGGCGAATTCTTCTG
GCAGCCTCGACAGTTTGTTGTGTGACAGATTAAGATCTGTGATGGTACTA
AACTTTTGCGAAAACTTGGGCGAAACGCTTTTGAGCACATTGCCACTGAG
ATTGCAGGTGATCAACTCTGTGTTTCGCATAAGATGATATACCGCATCTG
GTATTTGCATCAGTTCACAACTTGAAAGATCCAGTTTGTGGTTCTCCTTG
GCGTCTTCGCAACGCTGAACCACCCGGATAACTCCTTGTCCAGCGATCGG
GGGGCAGGTAACGATTCCGCCGATTCTCGCTATATGCGGCGGAATACTCG
GATCGTCCGATAGTCCGGACTCCTCGCTGGGATCCTCACTGGATATGTTC
GTGTTCCGGTTGTCGTTGCCGTCGTTGGGATCGTTGTTGCCATTATTACC
ACCATTATTACCACCATTATTACCACCGTTCGGGATGTTTGTTATGTCGT
TGCCAAAAGGCCGCATGTCGACTGATAACT

BS06593.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG2471-PA 750 CG2471-RA 1..750 766..17 3750 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:33:33
Subject Length Description Subject Range Query Range Score Percent Strand
Sclp-RA 1102 CG2471-RA 220..970 766..16 3755 100 Minus
Sclp-RC 1766 CG74-RC 220..967 766..19 3740 100 Minus
Sclp-RB 770 CG2471-RB 173..638 481..16 2330 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11924158..11924443 481..766 1430 100 Plus
X 23542271 X 11921998..11922168 169..339 855 100 Plus
X 23542271 X 11921779..11921932 16..169 770 100 Plus
X 23542271 X 11922230..11922374 337..481 725 100 Plus
Blast to na_te.dros performed on 2015-02-06 12:33:29 has no hits.

BS06593.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:07 Download gff for BS06593.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2471-PA 1..750 17..766 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:26:54 Download gff for BS06593.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2471-PA 1..750 17..766 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:44:41 Download gff for BS06593.3prime
Subject Subject Range Query Range Percent Splice Strand
Sclp-RA 220..970 16..766 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:52:48 Download gff for BS06593.3prime
Subject Subject Range Query Range Percent Splice Strand
Sclp-RA 220..970 16..766 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:52:48 Download gff for BS06593.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11922230..11922373 337..480 100 <- Plus
X 11921998..11922165 169..336 100 <- Plus
X 11921779..11921931 16..168 100 <- Plus
X 11924158..11924443 481..766 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:44:41 Download gff for BS06593.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11815812..11815964 16..168 100 <- Plus
arm_X 11816031..11816198 169..336 100 <- Plus
arm_X 11816263..11816406 337..480 100 <- Plus
arm_X 11818191..11818476 481..766 100   Plus

BS06593.5prime Sequence

780 bp (752 high quality bases) assembled on 2005-12-03

> BS06593.5prime
GAAGTTATCAGTCGACATGCGGCCTTTTGGCAACGACATAACAAACATCC
CGAACGGTGGTAATAATGGTGGTAATAATGGTGGTAATAATGGCAACAAC
GATCCCAACGACGGCAACGACAACCGGAACACGAACATATCCAGTGAGGA
TCCCAGCGAGGAGTCCGGACTATCGGACGATCCGAGTATTCCGCCGCATA
TAGCGAGAATCGGCGGAATCGTTACCTGCCCCCCGATCGCTGGACAAGGA
GTTATCCGGGTGGTTCAGCGTTGCGAAGACGCCAAGGAGAACCACAAACT
GGATCTTTCAAGTTGTGAACTGATGCAAATACCAGATGCGGTATATCATC
TTATGCGAAACACAGAGTTGATCACCTGCAATCTCAGTGGCAATGTGCTC
AAAAGCGTTTCGCCCAAGTTTTCGCAAAAGTTTAGTACCATCACAGATCT
TAATCTGTCACACAACAAACTGTCGAGGCTGCCAGAAGAATTCGCCAGCT
TGTCTGCGCTAACCAAGCTGAATATCTCGAACAATTCATTTATCGTTTTG
CCACAAGTAGTCTTTAAGCTTCAGAGTCTTGCCAGTCTGGATGCCCAGAA
CAATGCCATTTTGGAAATTGATACCGATGAGGCAATTACCAGTGACAATT
TGGCCCTCGTTGATCTTCGGAATAATCCGCTGAGCAGAAACTGCCGACGA
AAGCTGCAGAGCTTCAAGACCCCCTTCCACCTTGAGATCTCCAAGGATGT
CGAAGACGACTGGTNAAAGCTTTCTAGACC

BS06593.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG2471-PA 750 CG2471-RA 1..748 17..764 3740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
Sclp-RC 1766 CG74-RC 220..967 17..764 3740 100 Plus
Sclp-RA 1102 CG2471-RA 220..967 17..764 3740 100 Plus
Sclp-RB 770 CG2471-RB 173..635 302..764 2315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11924158..11924443 302..17 1430 100 Minus
X 23542271 X 11921998..11922168 614..444 855 100 Minus
X 23542271 X 11921782..11921932 764..614 755 100 Minus
X 23542271 X 11922230..11922374 446..302 725 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:54:18 has no hits.

BS06593.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:08 Download gff for BS06593.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2471-PA 1..750 17..767 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:26:56 Download gff for BS06593.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2471-PA 1..750 17..767 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:16:51 Download gff for BS06593.5prime
Subject Subject Range Query Range Percent Splice Strand
Sclp-RA 220..970 17..768 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:47:37 Download gff for BS06593.5prime
Subject Subject Range Query Range Percent Splice Strand
Sclp-RA 220..970 17..768 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:47:37 Download gff for BS06593.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11921779..11921931 615..768 99 <- Minus
X 11921998..11922165 447..614 100 <- Minus
X 11922230..11922373 303..446 100 <- Minus
X 11924158..11924443 17..302 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:16:51 Download gff for BS06593.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11815812..11815964 615..768 99 <- Minus
arm_X 11816031..11816198 447..614 100 <- Minus
arm_X 11816263..11816406 303..446 100 <- Minus
arm_X 11818191..11818476 17..302 100   Minus

BS06593.complete Sequence

782 bp (782 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635554

> BS06593.complete
GAAGTTATCAGTCGACATGCGGCCTTTTGGCAACGACATAACAAACATCC
CGAACGGTGGTAATAATGGTGGTAATAATGGTGGTAATAATGGCAACAAC
GATCCCAACGACGGCAACGACAACCGGAACACGAACATATCCAGTGAGGA
TCCCAGCGAGGAGTCCGGACTATCGGACGATCCGAGTATTCCGCCGCATA
TAGCGAGAATCGGCGGAATCGTTACCTGCCCCCCGATCGCTGGACAAGGA
GTTATCCGGGTGGTTCAGCGTTGCGAAGACGCCAAGGAGAACCACAAACT
GGATCTTTCAAGTTGTGAACTGATGCAAATACCAGATGCGGTATATCATC
TTATGCGAAACACAGAGTTGATCACCTGCAATCTCAGTGGCAATGTGCTC
AAAAGCGTTTCGCCCAAGTTTTCGCAAAAGTTTAGTACCATCACAGATCT
TAATCTGTCACACAACAAACTGTCGAGGCTGCCAGAAGAATTCGCCAGCT
TGTCTGCGCTAACCAAGCTGAATATCTCGAACAATTCATTTATCGTTTTG
CCACAAGTAGTCTTTAAGCTTCAGAGTCTTGCCAGTCTGGATGCCCAGAA
CAATGCCATTTTGGAAATTGATACCGATGAGGCAATTACCAGTGACAATT
TGGCCCTCGTTGATCTTCGGAATAATCCGCTGAGCAGAAACTGCCGACGA
AAGCTGCAGAGCTTCAAGACCCCCTTCCACCTTGAGATCTCCAAGGATGT
CGAAGACGACTGGTAAAAGCTTTCTAGACCAT

BS06593.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:46:45
Subject Length Description Subject Range Query Range Score Percent Strand
Sclp-RA 750 CG2471-PA 1..750 17..766 3750 100 Plus
Sclp-RC 1020 CG2471-PC 1..748 17..764 3740 100 Plus
Sclp-RB 528 CG2471-PB 64..528 302..766 2325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:46:46
Subject Length Description Subject Range Query Range Score Percent Strand
Sclp-RA 1102 CG2471-RA 220..970 17..767 3755 100 Plus
Sclp-RC 1766 CG74-RC 220..967 17..764 3740 100 Plus
Sclp-RB 770 CG2471-RB 173..638 302..767 2330 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11924158..11924443 302..17 1430 100 Minus
X 23542271 X 11921998..11922168 614..444 855 100 Minus
X 23542271 X 11921779..11921932 767..614 770 100 Minus
X 23542271 X 11922230..11922374 446..302 725 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:46:44 has no hits.

BS06593.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:20 Download gff for BS06593.complete
Subject Subject Range Query Range Percent Splice Strand
Sclp-RA 1..750 17..766 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:37 Download gff for BS06593.complete
Subject Subject Range Query Range Percent Splice Strand
Sclp-RA 220..970 17..767 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:54:30 Download gff for BS06593.complete
Subject Subject Range Query Range Percent Splice Strand
Sclp-RA 220..967 17..764 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:21 Download gff for BS06593.complete
Subject Subject Range Query Range Percent Splice Strand
Sclp-RA 220..970 17..767 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:16 Download gff for BS06593.complete
Subject Subject Range Query Range Percent Splice Strand
Sclp-RA 220..967 17..764 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:16 Download gff for BS06593.complete
Subject Subject Range Query Range Percent Splice Strand
X 11921782..11921931 615..764 100 <- Minus
X 11921998..11922165 447..614 100 <- Minus
X 11922230..11922373 303..446 100 <- Minus
X 11924158..11924443 17..302 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:54:30 Download gff for BS06593.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11815815..11815964 615..764 100 <- Minus
arm_X 11816031..11816198 447..614 100 <- Minus
arm_X 11816263..11816406 303..446 100 <- Minus
arm_X 11818191..11818476 17..302 100   Minus

BS06593.pep Sequence

Translation from 16 to 765

> BS06593.pep
MRPFGNDITNIPNGGNNGGNNGGNNGNNDPNDGNDNRNTNISSEDPSEES
GLSDDPSIPPHIARIGGIVTCPPIAGQGVIRVVQRCEDAKENHKLDLSSC
ELMQIPDAVYHLMRNTELITCNLSGNVLKSVSPKFSQKFSTITDLNLSHN
KLSRLPEEFASLSALTKLNISNNSFIVLPQVVFKLQSLASLDAQNNAILE
IDTDEAITSDNLALVDLRNNPLSRNCRRKLQSFKTPFHLEISKDVEDDW*

BS06593.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:25
Subject Length Description Subject Range Query Range Score Percent Strand
Sclp-PA 249 CG2471-PA 1..249 1..249 1299 100 Plus
Sclp-PC 339 CG2471-PC 1..249 1..249 1299 100 Plus
Sclp-PB 175 CG2471-PB 5..175 79..249 828 95.3 Plus
f-cup-PE 620 CG9611-PE 446..572 93..222 192 38.2 Plus
f-cup-PB 650 CG9611-PB 476..602 93..222 192 38.2 Plus