Clone Sequence Records
BS06593.3prime Sequence
780 bp (779 high quality bases) assembled on 2005-12-03
> BS06593.3prime
ATGGTCTAGAAAGCTTTTACCAGTCGTCTTCGACATCCTTGGAGATCTCA
AGGTGGAAGGGGGTCTTGAAGCTCTGCAGCTTTCGTCGGCAGTTTCTGCT
CAGCGGATTATTCCGAAGATCAACGAGGGCCAAATTGTCACTGGTAATTG
CCTCATCGGTATCAATTTCCAAAATGGCATTGTTCTGGGCATCCAGACTG
GCAAGACTCTGAAGCTTAAAGACTACTTGTGGCAAAACGATAAATGAATT
GTTCGAGATATTCAGCTTGGTTAGCGCAGACAAGCTGGCGAATTCTTCTG
GCAGCCTCGACAGTTTGTTGTGTGACAGATTAAGATCTGTGATGGTACTA
AACTTTTGCGAAAACTTGGGCGAAACGCTTTTGAGCACATTGCCACTGAG
ATTGCAGGTGATCAACTCTGTGTTTCGCATAAGATGATATACCGCATCTG
GTATTTGCATCAGTTCACAACTTGAAAGATCCAGTTTGTGGTTCTCCTTG
GCGTCTTCGCAACGCTGAACCACCCGGATAACTCCTTGTCCAGCGATCGG
GGGGCAGGTAACGATTCCGCCGATTCTCGCTATATGCGGCGGAATACTCG
GATCGTCCGATAGTCCGGACTCCTCGCTGGGATCCTCACTGGATATGTTC
GTGTTCCGGTTGTCGTTGCCGTCGTTGGGATCGTTGTTGCCATTATTACC
ACCATTATTACCACCATTATTACCACCGTTCGGGATGTTTGTTATGTCGT
TGCCAAAAGGCCGCATGTCGACTGATAACT
BS06593.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2471-PA | 750 | CG2471-RA | 1..750 | 766..17 | 3750 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:33:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sclp-RA | 1102 | CG2471-RA | 220..970 | 766..16 | 3755 | 100 | Minus |
Sclp-RC | 1766 | CG74-RC | 220..967 | 766..19 | 3740 | 100 | Minus |
Sclp-RB | 770 | CG2471-RB | 173..638 | 481..16 | 2330 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:33:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11924158..11924443 | 481..766 | 1430 | 100 | Plus |
X | 23542271 | X | 11921998..11922168 | 169..339 | 855 | 100 | Plus |
X | 23542271 | X | 11921779..11921932 | 16..169 | 770 | 100 | Plus |
X | 23542271 | X | 11922230..11922374 | 337..481 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:33:29 has no hits.
BS06593.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:07 Download gff for
BS06593.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2471-PA | 1..750 | 17..766 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:26:54 Download gff for
BS06593.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2471-PA | 1..750 | 17..766 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:44:41 Download gff for
BS06593.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sclp-RA | 220..970 | 16..766 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:52:48 Download gff for
BS06593.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sclp-RA | 220..970 | 16..766 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:52:48 Download gff for
BS06593.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11922230..11922373 | 337..480 | 100 | <- | Plus |
X | 11921998..11922165 | 169..336 | 100 | <- | Plus |
X | 11921779..11921931 | 16..168 | 100 | <- | Plus |
X | 11924158..11924443 | 481..766 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:44:41 Download gff for
BS06593.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11815812..11815964 | 16..168 | 100 | <- | Plus |
arm_X | 11816031..11816198 | 169..336 | 100 | <- | Plus |
arm_X | 11816263..11816406 | 337..480 | 100 | <- | Plus |
arm_X | 11818191..11818476 | 481..766 | 100 | | Plus |
BS06593.5prime Sequence
780 bp (752 high quality bases) assembled on 2005-12-03
> BS06593.5prime
GAAGTTATCAGTCGACATGCGGCCTTTTGGCAACGACATAACAAACATCC
CGAACGGTGGTAATAATGGTGGTAATAATGGTGGTAATAATGGCAACAAC
GATCCCAACGACGGCAACGACAACCGGAACACGAACATATCCAGTGAGGA
TCCCAGCGAGGAGTCCGGACTATCGGACGATCCGAGTATTCCGCCGCATA
TAGCGAGAATCGGCGGAATCGTTACCTGCCCCCCGATCGCTGGACAAGGA
GTTATCCGGGTGGTTCAGCGTTGCGAAGACGCCAAGGAGAACCACAAACT
GGATCTTTCAAGTTGTGAACTGATGCAAATACCAGATGCGGTATATCATC
TTATGCGAAACACAGAGTTGATCACCTGCAATCTCAGTGGCAATGTGCTC
AAAAGCGTTTCGCCCAAGTTTTCGCAAAAGTTTAGTACCATCACAGATCT
TAATCTGTCACACAACAAACTGTCGAGGCTGCCAGAAGAATTCGCCAGCT
TGTCTGCGCTAACCAAGCTGAATATCTCGAACAATTCATTTATCGTTTTG
CCACAAGTAGTCTTTAAGCTTCAGAGTCTTGCCAGTCTGGATGCCCAGAA
CAATGCCATTTTGGAAATTGATACCGATGAGGCAATTACCAGTGACAATT
TGGCCCTCGTTGATCTTCGGAATAATCCGCTGAGCAGAAACTGCCGACGA
AAGCTGCAGAGCTTCAAGACCCCCTTCCACCTTGAGATCTCCAAGGATGT
CGAAGACGACTGGTNAAAGCTTTCTAGACC
BS06593.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2471-PA | 750 | CG2471-RA | 1..748 | 17..764 | 3740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:54:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sclp-RC | 1766 | CG74-RC | 220..967 | 17..764 | 3740 | 100 | Plus |
Sclp-RA | 1102 | CG2471-RA | 220..967 | 17..764 | 3740 | 100 | Plus |
Sclp-RB | 770 | CG2471-RB | 173..635 | 302..764 | 2315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:54:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11924158..11924443 | 302..17 | 1430 | 100 | Minus |
X | 23542271 | X | 11921998..11922168 | 614..444 | 855 | 100 | Minus |
X | 23542271 | X | 11921782..11921932 | 764..614 | 755 | 100 | Minus |
X | 23542271 | X | 11922230..11922374 | 446..302 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:54:18 has no hits.
BS06593.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:08 Download gff for
BS06593.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2471-PA | 1..750 | 17..767 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:26:56 Download gff for
BS06593.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2471-PA | 1..750 | 17..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:16:51 Download gff for
BS06593.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sclp-RA | 220..970 | 17..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:47:37 Download gff for
BS06593.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sclp-RA | 220..970 | 17..768 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:47:37 Download gff for
BS06593.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11921779..11921931 | 615..768 | 99 | <- | Minus |
X | 11921998..11922165 | 447..614 | 100 | <- | Minus |
X | 11922230..11922373 | 303..446 | 100 | <- | Minus |
X | 11924158..11924443 | 17..302 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:16:51 Download gff for
BS06593.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11815812..11815964 | 615..768 | 99 | <- | Minus |
arm_X | 11816031..11816198 | 447..614 | 100 | <- | Minus |
arm_X | 11816263..11816406 | 303..446 | 100 | <- | Minus |
arm_X | 11818191..11818476 | 17..302 | 100 | | Minus |
BS06593.complete Sequence
782 bp (782 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635554
> BS06593.complete
GAAGTTATCAGTCGACATGCGGCCTTTTGGCAACGACATAACAAACATCC
CGAACGGTGGTAATAATGGTGGTAATAATGGTGGTAATAATGGCAACAAC
GATCCCAACGACGGCAACGACAACCGGAACACGAACATATCCAGTGAGGA
TCCCAGCGAGGAGTCCGGACTATCGGACGATCCGAGTATTCCGCCGCATA
TAGCGAGAATCGGCGGAATCGTTACCTGCCCCCCGATCGCTGGACAAGGA
GTTATCCGGGTGGTTCAGCGTTGCGAAGACGCCAAGGAGAACCACAAACT
GGATCTTTCAAGTTGTGAACTGATGCAAATACCAGATGCGGTATATCATC
TTATGCGAAACACAGAGTTGATCACCTGCAATCTCAGTGGCAATGTGCTC
AAAAGCGTTTCGCCCAAGTTTTCGCAAAAGTTTAGTACCATCACAGATCT
TAATCTGTCACACAACAAACTGTCGAGGCTGCCAGAAGAATTCGCCAGCT
TGTCTGCGCTAACCAAGCTGAATATCTCGAACAATTCATTTATCGTTTTG
CCACAAGTAGTCTTTAAGCTTCAGAGTCTTGCCAGTCTGGATGCCCAGAA
CAATGCCATTTTGGAAATTGATACCGATGAGGCAATTACCAGTGACAATT
TGGCCCTCGTTGATCTTCGGAATAATCCGCTGAGCAGAAACTGCCGACGA
AAGCTGCAGAGCTTCAAGACCCCCTTCCACCTTGAGATCTCCAAGGATGT
CGAAGACGACTGGTAAAAGCTTTCTAGACCAT
BS06593.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:46:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sclp-RA | 750 | CG2471-PA | 1..750 | 17..766 | 3750 | 100 | Plus |
Sclp-RC | 1020 | CG2471-PC | 1..748 | 17..764 | 3740 | 100 | Plus |
Sclp-RB | 528 | CG2471-PB | 64..528 | 302..766 | 2325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:46:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sclp-RA | 1102 | CG2471-RA | 220..970 | 17..767 | 3755 | 100 | Plus |
Sclp-RC | 1766 | CG74-RC | 220..967 | 17..764 | 3740 | 100 | Plus |
Sclp-RB | 770 | CG2471-RB | 173..638 | 302..767 | 2330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:46:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11924158..11924443 | 302..17 | 1430 | 100 | Minus |
X | 23542271 | X | 11921998..11922168 | 614..444 | 855 | 100 | Minus |
X | 23542271 | X | 11921779..11921932 | 767..614 | 770 | 100 | Minus |
X | 23542271 | X | 11922230..11922374 | 446..302 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:46:44 has no hits.
BS06593.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:20 Download gff for
BS06593.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sclp-RA | 1..750 | 17..766 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:37 Download gff for
BS06593.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sclp-RA | 220..970 | 17..767 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:54:30 Download gff for
BS06593.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sclp-RA | 220..967 | 17..764 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:21 Download gff for
BS06593.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sclp-RA | 220..970 | 17..767 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:16 Download gff for
BS06593.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sclp-RA | 220..967 | 17..764 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:16 Download gff for
BS06593.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11921782..11921931 | 615..764 | 100 | <- | Minus |
X | 11921998..11922165 | 447..614 | 100 | <- | Minus |
X | 11922230..11922373 | 303..446 | 100 | <- | Minus |
X | 11924158..11924443 | 17..302 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:54:30 Download gff for
BS06593.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11815815..11815964 | 615..764 | 100 | <- | Minus |
arm_X | 11816031..11816198 | 447..614 | 100 | <- | Minus |
arm_X | 11816263..11816406 | 303..446 | 100 | <- | Minus |
arm_X | 11818191..11818476 | 17..302 | 100 | | Minus |
BS06593.pep Sequence
Translation from 16 to 765
> BS06593.pep
MRPFGNDITNIPNGGNNGGNNGGNNGNNDPNDGNDNRNTNISSEDPSEES
GLSDDPSIPPHIARIGGIVTCPPIAGQGVIRVVQRCEDAKENHKLDLSSC
ELMQIPDAVYHLMRNTELITCNLSGNVLKSVSPKFSQKFSTITDLNLSHN
KLSRLPEEFASLSALTKLNISNNSFIVLPQVVFKLQSLASLDAQNNAILE
IDTDEAITSDNLALVDLRNNPLSRNCRRKLQSFKTPFHLEISKDVEDDW*
BS06593.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sclp-PA | 249 | CG2471-PA | 1..249 | 1..249 | 1299 | 100 | Plus |
Sclp-PC | 339 | CG2471-PC | 1..249 | 1..249 | 1299 | 100 | Plus |
Sclp-PB | 175 | CG2471-PB | 5..175 | 79..249 | 828 | 95.3 | Plus |
f-cup-PE | 620 | CG9611-PE | 446..572 | 93..222 | 192 | 38.2 | Plus |
f-cup-PB | 650 | CG9611-PB | 476..602 | 93..222 | 192 | 38.2 | Plus |