Clone Sequence Records
BS06601.3prime Sequence
965 bp (836 high quality bases) assembled on 2005-12-04
> BS06601.3prime
ATGGTCTAGAAAGCTTTCACGAAGCAGTTCTGCGTTTGTACTCCGCACGG
GCATCCTCTATTTCATTAAGAAGATCTGCGTAGGTTGCATTCGCTCCGTC
AAAGTCAAGGATAGCAACGCAACAAATTTGCGCTCGCTTTTGGAGGGCAT
AAGAAAGCTCCCTTCTCAGCAGAGGAAAGCAATAGGGCACTTGTTGCTGC
TGGCATTGGAATTTCAAGCCTTCTATAGTCGCATCTAGACCACTTTCGCC
GGGGCAGATTTCGCAGTCAGTGGCCAGGAACAACAATTTCACCTTGTTTA
TCCTTAGCCTCGCCAGAGCTTCTCGAACACCCAAAACCAGGCGGGGATGT
GCACGCGCTTTAATCTCGTTTTTGGCAAAGGCGCGCTTCTGAAATCGATC
CAGGTCCCTTAACAACTGAGTGGACAACTCCTTGAGGCGAGGACGGGTGC
AGTTGTCACAATAGCTTCTAAATCGCCGTGAGTGAATGGCATGTACTGTT
TTTGCTTGTGAAGGGTTGTTGGGTGCAGGGGTTTTACTAAGTGATAGGTT
TTGAACTTGTTGCTCCAGCGGAATAGCATTCGGATTGATATCTTGACCAA
CTACTGGGACTCCTTCAAGATCATTCTCTGCGACTTCTCTCTCCGCCTTC
TTTGAAGTGCGATATACACGTACGGACTTCTTCAACCTGGTGATCTTCTT
CTTGGGATCAAGGCGGGTTTTGCCCTTGGGTTTGTAAACTATGTAGCTAC
CTCTTGTTATGGCTAAATGTGTCTTTTGAAGTTTATGTGCCTTTGTTTGC
CTTTGTGTTTTTGGTCTCGGCTTGATGACAAAGTCCAGAAGAGAGGTTTG
CTGCTCCCGTTTCCTGTGCTGGTTTTTGTACTTGGAGCTGCGTGGAGTAA
TCTTGATCGCTGTATCCTGGACATCCTGATTCCTGCTCCTCCTTATTTTT
TCAGTCATGTCGACT
BS06601.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7066-PA | 942 | CG7066-RA | 1..942 | 958..17 | 4710 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:00:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sbp2-RA | 1055 | CG7066-RA | 37..978 | 958..17 | 4710 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:00:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8304193..8304686 | 958..465 | 2470 | 100 | Minus |
3L | 28110227 | 3L | 8305022..8305248 | 243..17 | 1135 | 100 | Minus |
3L | 28110227 | 3L | 8304746..8304971 | 466..241 | 1130 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:00:42 has no hits.
BS06601.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:16 Download gff for
BS06601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7066-PA | 1..942 | 17..958 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:07 Download gff for
BS06601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7066-PA | 1..942 | 17..958 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:58:39 Download gff for
BS06601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sbp2-RA | 32..984 | 10..965 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:40:38 Download gff for
BS06601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sbp2-RA | 32..984 | 10..965 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:40:38 Download gff for
BS06601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8304188..8304686 | 465..965 | 99 | -> | Minus |
3L | 8304748..8304968 | 244..464 | 100 | -> | Minus |
3L | 8305022..8305254 | 10..243 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:58:39 Download gff for
BS06601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8297288..8297786 | 465..965 | 99 | -> | Minus |
arm_3L | 8297848..8298068 | 244..464 | 100 | -> | Minus |
arm_3L | 8298122..8298354 | 10..243 | 99 | | Minus |
BS06601.5prime Sequence
952 bp (883 high quality bases) assembled on 2005-12-04
> BS06601.5prime
GAAGTTATCAGTCGACATGACTGAAAAAATAAGGAGGAGCAGGAATCAGG
ATGTCCAGGATACAGCGATCAAGATTACTCCACGCAGCTCCAAGTACAAA
AACCAGCACAGGAAACGGGAGCAGCAAACCTCTCTTCTGGACTTTGTCAT
CAAGCCGAGACCAAAAACACAAAGGCAAACAAAGGCACATAAACTTCAAA
AGACACATTTAGCCATAACAAGAGGTAGCTACATAGTTTACAAACCCAAG
GGCAAAACCCGCCTTGATCCCAAGAAGAAGATCACCAGGTTGAAGAAGTC
CGTACGTGTATATCGCACTTCAAAGAAGGCGGAGAGAGAAGTCGCAGAGA
ATGATCTTGAAGGAGTCCCAGTAGTTGGTCAAGATATCAATCCGAATGCT
ATTCCGCTGGAGCAACAAGTTCAAAACCTATCACTTAGTAAAACCCCTGC
ACCCAACAACCCTTCACAAGCAAAAACAGTACATGCCATTCACTCACGGC
GATTTAGAAGCTATTGTGACAACTGCACCCGTCCTCGCCTCAAGGAGTTG
TCCACTCAGTTGTTAAGGGACCTGGATCGATTTCAGAAGCGCGCCTTTGC
CAAAAACGAGATTAAAGCGCGTGCACATCCCCGCCTGGTTTTGGGTGTTC
GAGAAGCTCTGGCGAGGCTAAGGATAAACAAGGTGAAATTGTTGTTCCTG
GCCACTGACTGCGAAATCTGCCCCGGCGAAAGTGGTCTAGATGCGACTAT
AGAAGGCTTGAAATTCCAATGCCAGCAGCAACAAGTGCCCTATTGCTTTC
CTCTGCTGAGAAGGGAGCTTTCTTATGCCCTCCAAAAGCGAGCGCAAATT
TGTTGCGTTGCTATCCTTGACTTTGACGGAGCGAATGGCACCTACGCAGA
TCTTCTTAAATGAATAGAGGATGCCCCGTGCGGAGTACAAACGCAGAACT
GC
BS06601.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7066-PA | 942 | CG7066-RA | 1..893 | 17..909 | 4415 | 99.7 | Plus |
CG7066-PA | 942 | CG7066-RA | 908..935 | 925..952 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:44:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sbp2-RA | 1055 | CG7066-RA | 37..971 | 17..952 | 4580 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:44:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8304193..8304686 | 17..510 | 2470 | 100 | Plus |
3L | 28110227 | 3L | 8304746..8304971 | 509..734 | 1130 | 100 | Plus |
3L | 28110227 | 3L | 8305022..8305241 | 732..952 | 980 | 97.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:44:49 has no hits.
BS06601.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:17 Download gff for
BS06601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7066-PA | 1..935 | 17..952 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:08 Download gff for
BS06601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7066-PA | 1..935 | 17..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:43:25 Download gff for
BS06601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sbp2-RA | 31..971 | 9..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:19 Download gff for
BS06601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sbp2-RA | 31..971 | 9..952 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:19 Download gff for
BS06601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8304187..8304686 | 9..510 | 99 | -> | Plus |
3L | 8304748..8304968 | 511..731 | 100 | -> | Plus |
3L | 8305022..8305241 | 732..952 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:43:25 Download gff for
BS06601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8297287..8297786 | 9..510 | 99 | -> | Plus |
arm_3L | 8297848..8298068 | 511..731 | 100 | -> | Plus |
arm_3L | 8298122..8298341 | 732..952 | 97 | | Plus |
BS06601.complete Sequence
974 bp (974 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635555
> BS06601.complete
GAAGTTATCAGTCGACATGACTGAAAAAATAAGGAGGAGCAGGAATCAGG
ATGTCCAGGATACAGCGATCAAGATTACTCCACGCAGCTCCAAGTACAAA
AACCAGCACAGGAAACGGGAGCAGCAAACCTCTCTTCTGGACTTTGTCAT
CAAGCCGAGACCAAAAACACAAAGGCAAACAAAGGCACATAAACTTCAAA
AGACACATTTAGCCATAACAAGAGGTAGCTACATAGTTTACAAACCCAAG
GGCAAAACCCGCCTTGATCCCAAGAAGAAGATCACCAGGTTGAAGAAGTC
CGTACGTGTATATCGCACTTCAAAGAAGGCGGAGAGAGAAGTCGCAGAGA
ATGATCTTGAAGGAGTCCCAGTAGTTGGTCAAGATATCAATCCGAATGCT
ATTCCGCTGGAGCAACAAGTTCAAAACCTATCACTTAGTAAAACCCCTGC
ACCCAACAACCCTTCACAAGCAAAAACAGTACATGCCATTCACTCACGGC
GATTTAGAAGCTATTGTGACAACTGCACCCGTCCTCGCCTCAAGGAGTTG
TCCACTCAGTTGTTAAGGGACCTGGATCGATTTCAGAAGCGCGCCTTTGC
CAAAAACGAGATTAAAGCGCGTGCACATCCCCGCCTGGTTTTGGGTGTTC
GAGAAGCTCTGGCGAGGCTAAGGATAAACAAGGTGAAATTGTTGTTCCTG
GCCACTGACTGCGAAATCTGCCCCGGCGAAAGTGGTCTAGATGCGACTAT
AGAAGGCTTGAAATTCCAATGCCAGCAGCAACAAGTGCCCTATTGCTTTC
CTCTGCTGAGAAGGGAGCTTTCTTATGCCCTCCAAAAGCGAGCGCAAATT
TGTTGCGTTGCTATCCTTGACTTTGACGGAGCGAATGCAACCTACGCAGA
TCTTCTTAATGAAATAGAGGATGCCCGTGCGGAGTACAAACGCAGAACTG
CTTCGTGAAAGCTTTCTAGACCAT
BS06601.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:12:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sbp2-RA | 942 | CG7066-PA | 1..942 | 17..958 | 4710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sbp2-RA | 1055 | CG7066-RA | 37..978 | 17..958 | 4710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:12:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8304193..8304686 | 17..510 | 2470 | 100 | Plus |
3L | 28110227 | 3L | 8305022..8305248 | 732..958 | 1135 | 100 | Plus |
3L | 28110227 | 3L | 8304746..8304971 | 509..734 | 1130 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:12:56 has no hits.
BS06601.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:37 Download gff for
BS06601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sbp2-RA | 1..942 | 17..958 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:35 Download gff for
BS06601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sbp2-RA | 28..981 | 9..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:48:14 Download gff for
BS06601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sbp2-RA | 37..977 | 17..957 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:38 Download gff for
BS06601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sbp2-RA | 28..981 | 9..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:20:59 Download gff for
BS06601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sbp2-RA | 37..977 | 17..957 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:20:59 Download gff for
BS06601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8304193..8304686 | 17..510 | 100 | -> | Plus |
3L | 8304748..8304968 | 511..731 | 100 | -> | Plus |
3L | 8305022..8305247 | 732..957 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:48:14 Download gff for
BS06601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8297293..8297786 | 17..510 | 100 | -> | Plus |
arm_3L | 8297848..8298068 | 511..731 | 100 | -> | Plus |
arm_3L | 8298122..8298347 | 732..957 | 100 | | Plus |
BS06601.pep Sequence
Translation from 16 to 957
> BS06601.pep
MTEKIRRSRNQDVQDTAIKITPRSSKYKNQHRKREQQTSLLDFVIKPRPK
TQRQTKAHKLQKTHLAITRGSYIVYKPKGKTRLDPKKKITRLKKSVRVYR
TSKKAEREVAENDLEGVPVVGQDINPNAIPLEQQVQNLSLSKTPAPNNPS
QAKTVHAIHSRRFRSYCDNCTRPRLKELSTQLLRDLDRFQKRAFAKNEIK
ARAHPRLVLGVREALARLRINKVKLLFLATDCEICPGESGLDATIEGLKF
QCQQQQVPYCFPLLRRELSYALQKRAQICCVAILDFDGANATYADLLNEI
EDARAEYKRRTAS*
BS06601.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sbp2-PA | 313 | CG7066-PA | 1..313 | 1..313 | 1604 | 100 | Plus |