Clone BS06601 Report

Search the DGRC for BS06601

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:66
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptSbp2-RA
Protein status:BS06601.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06601.3prime Sequence

965 bp (836 high quality bases) assembled on 2005-12-04

> BS06601.3prime
ATGGTCTAGAAAGCTTTCACGAAGCAGTTCTGCGTTTGTACTCCGCACGG
GCATCCTCTATTTCATTAAGAAGATCTGCGTAGGTTGCATTCGCTCCGTC
AAAGTCAAGGATAGCAACGCAACAAATTTGCGCTCGCTTTTGGAGGGCAT
AAGAAAGCTCCCTTCTCAGCAGAGGAAAGCAATAGGGCACTTGTTGCTGC
TGGCATTGGAATTTCAAGCCTTCTATAGTCGCATCTAGACCACTTTCGCC
GGGGCAGATTTCGCAGTCAGTGGCCAGGAACAACAATTTCACCTTGTTTA
TCCTTAGCCTCGCCAGAGCTTCTCGAACACCCAAAACCAGGCGGGGATGT
GCACGCGCTTTAATCTCGTTTTTGGCAAAGGCGCGCTTCTGAAATCGATC
CAGGTCCCTTAACAACTGAGTGGACAACTCCTTGAGGCGAGGACGGGTGC
AGTTGTCACAATAGCTTCTAAATCGCCGTGAGTGAATGGCATGTACTGTT
TTTGCTTGTGAAGGGTTGTTGGGTGCAGGGGTTTTACTAAGTGATAGGTT
TTGAACTTGTTGCTCCAGCGGAATAGCATTCGGATTGATATCTTGACCAA
CTACTGGGACTCCTTCAAGATCATTCTCTGCGACTTCTCTCTCCGCCTTC
TTTGAAGTGCGATATACACGTACGGACTTCTTCAACCTGGTGATCTTCTT
CTTGGGATCAAGGCGGGTTTTGCCCTTGGGTTTGTAAACTATGTAGCTAC
CTCTTGTTATGGCTAAATGTGTCTTTTGAAGTTTATGTGCCTTTGTTTGC
CTTTGTGTTTTTGGTCTCGGCTTGATGACAAAGTCCAGAAGAGAGGTTTG
CTGCTCCCGTTTCCTGTGCTGGTTTTTGTACTTGGAGCTGCGTGGAGTAA
TCTTGATCGCTGTATCCTGGACATCCTGATTCCTGCTCCTCCTTATTTTT
TCAGTCATGTCGACT

BS06601.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7066-PA 942 CG7066-RA 1..942 958..17 4710 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:00:44
Subject Length Description Subject Range Query Range Score Percent Strand
Sbp2-RA 1055 CG7066-RA 37..978 958..17 4710 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8304193..8304686 958..465 2470 100 Minus
3L 28110227 3L 8305022..8305248 243..17 1135 100 Minus
3L 28110227 3L 8304746..8304971 466..241 1130 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:00:42 has no hits.

BS06601.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:16 Download gff for BS06601.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7066-PA 1..942 17..958 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:07 Download gff for BS06601.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7066-PA 1..942 17..958 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:58:39 Download gff for BS06601.3prime
Subject Subject Range Query Range Percent Splice Strand
Sbp2-RA 32..984 10..965 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:40:38 Download gff for BS06601.3prime
Subject Subject Range Query Range Percent Splice Strand
Sbp2-RA 32..984 10..965 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:40:38 Download gff for BS06601.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8304188..8304686 465..965 99 -> Minus
3L 8304748..8304968 244..464 100 -> Minus
3L 8305022..8305254 10..243 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:58:39 Download gff for BS06601.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8297288..8297786 465..965 99 -> Minus
arm_3L 8297848..8298068 244..464 100 -> Minus
arm_3L 8298122..8298354 10..243 99   Minus

BS06601.5prime Sequence

952 bp (883 high quality bases) assembled on 2005-12-04

> BS06601.5prime
GAAGTTATCAGTCGACATGACTGAAAAAATAAGGAGGAGCAGGAATCAGG
ATGTCCAGGATACAGCGATCAAGATTACTCCACGCAGCTCCAAGTACAAA
AACCAGCACAGGAAACGGGAGCAGCAAACCTCTCTTCTGGACTTTGTCAT
CAAGCCGAGACCAAAAACACAAAGGCAAACAAAGGCACATAAACTTCAAA
AGACACATTTAGCCATAACAAGAGGTAGCTACATAGTTTACAAACCCAAG
GGCAAAACCCGCCTTGATCCCAAGAAGAAGATCACCAGGTTGAAGAAGTC
CGTACGTGTATATCGCACTTCAAAGAAGGCGGAGAGAGAAGTCGCAGAGA
ATGATCTTGAAGGAGTCCCAGTAGTTGGTCAAGATATCAATCCGAATGCT
ATTCCGCTGGAGCAACAAGTTCAAAACCTATCACTTAGTAAAACCCCTGC
ACCCAACAACCCTTCACAAGCAAAAACAGTACATGCCATTCACTCACGGC
GATTTAGAAGCTATTGTGACAACTGCACCCGTCCTCGCCTCAAGGAGTTG
TCCACTCAGTTGTTAAGGGACCTGGATCGATTTCAGAAGCGCGCCTTTGC
CAAAAACGAGATTAAAGCGCGTGCACATCCCCGCCTGGTTTTGGGTGTTC
GAGAAGCTCTGGCGAGGCTAAGGATAAACAAGGTGAAATTGTTGTTCCTG
GCCACTGACTGCGAAATCTGCCCCGGCGAAAGTGGTCTAGATGCGACTAT
AGAAGGCTTGAAATTCCAATGCCAGCAGCAACAAGTGCCCTATTGCTTTC
CTCTGCTGAGAAGGGAGCTTTCTTATGCCCTCCAAAAGCGAGCGCAAATT
TGTTGCGTTGCTATCCTTGACTTTGACGGAGCGAATGGCACCTACGCAGA
TCTTCTTAAATGAATAGAGGATGCCCCGTGCGGAGTACAAACGCAGAACT
GC

BS06601.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG7066-PA 942 CG7066-RA 1..893 17..909 4415 99.7 Plus
CG7066-PA 942 CG7066-RA 908..935 925..952 140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
Sbp2-RA 1055 CG7066-RA 37..971 17..952 4580 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:44:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8304193..8304686 17..510 2470 100 Plus
3L 28110227 3L 8304746..8304971 509..734 1130 100 Plus
3L 28110227 3L 8305022..8305241 732..952 980 97.3 Plus
Blast to na_te.dros performed on 2015-02-10 21:44:49 has no hits.

BS06601.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:17 Download gff for BS06601.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7066-PA 1..935 17..952 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:08 Download gff for BS06601.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7066-PA 1..935 17..952 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:43:25 Download gff for BS06601.5prime
Subject Subject Range Query Range Percent Splice Strand
Sbp2-RA 31..971 9..952 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:19 Download gff for BS06601.5prime
Subject Subject Range Query Range Percent Splice Strand
Sbp2-RA 31..971 9..952 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:19 Download gff for BS06601.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8304187..8304686 9..510 99 -> Plus
3L 8304748..8304968 511..731 100 -> Plus
3L 8305022..8305241 732..952 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:43:25 Download gff for BS06601.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8297287..8297786 9..510 99 -> Plus
arm_3L 8297848..8298068 511..731 100 -> Plus
arm_3L 8298122..8298341 732..952 97   Plus

BS06601.complete Sequence

974 bp (974 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635555

> BS06601.complete
GAAGTTATCAGTCGACATGACTGAAAAAATAAGGAGGAGCAGGAATCAGG
ATGTCCAGGATACAGCGATCAAGATTACTCCACGCAGCTCCAAGTACAAA
AACCAGCACAGGAAACGGGAGCAGCAAACCTCTCTTCTGGACTTTGTCAT
CAAGCCGAGACCAAAAACACAAAGGCAAACAAAGGCACATAAACTTCAAA
AGACACATTTAGCCATAACAAGAGGTAGCTACATAGTTTACAAACCCAAG
GGCAAAACCCGCCTTGATCCCAAGAAGAAGATCACCAGGTTGAAGAAGTC
CGTACGTGTATATCGCACTTCAAAGAAGGCGGAGAGAGAAGTCGCAGAGA
ATGATCTTGAAGGAGTCCCAGTAGTTGGTCAAGATATCAATCCGAATGCT
ATTCCGCTGGAGCAACAAGTTCAAAACCTATCACTTAGTAAAACCCCTGC
ACCCAACAACCCTTCACAAGCAAAAACAGTACATGCCATTCACTCACGGC
GATTTAGAAGCTATTGTGACAACTGCACCCGTCCTCGCCTCAAGGAGTTG
TCCACTCAGTTGTTAAGGGACCTGGATCGATTTCAGAAGCGCGCCTTTGC
CAAAAACGAGATTAAAGCGCGTGCACATCCCCGCCTGGTTTTGGGTGTTC
GAGAAGCTCTGGCGAGGCTAAGGATAAACAAGGTGAAATTGTTGTTCCTG
GCCACTGACTGCGAAATCTGCCCCGGCGAAAGTGGTCTAGATGCGACTAT
AGAAGGCTTGAAATTCCAATGCCAGCAGCAACAAGTGCCCTATTGCTTTC
CTCTGCTGAGAAGGGAGCTTTCTTATGCCCTCCAAAAGCGAGCGCAAATT
TGTTGCGTTGCTATCCTTGACTTTGACGGAGCGAATGCAACCTACGCAGA
TCTTCTTAATGAAATAGAGGATGCCCGTGCGGAGTACAAACGCAGAACTG
CTTCGTGAAAGCTTTCTAGACCAT

BS06601.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:12:57
Subject Length Description Subject Range Query Range Score Percent Strand
Sbp2-RA 942 CG7066-PA 1..942 17..958 4710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:58
Subject Length Description Subject Range Query Range Score Percent Strand
Sbp2-RA 1055 CG7066-RA 37..978 17..958 4710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:12:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8304193..8304686 17..510 2470 100 Plus
3L 28110227 3L 8305022..8305248 732..958 1135 100 Plus
3L 28110227 3L 8304746..8304971 509..734 1130 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:12:56 has no hits.

BS06601.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:37 Download gff for BS06601.complete
Subject Subject Range Query Range Percent Splice Strand
Sbp2-RA 1..942 17..958 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:35 Download gff for BS06601.complete
Subject Subject Range Query Range Percent Splice Strand
Sbp2-RA 28..981 9..965 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:48:14 Download gff for BS06601.complete
Subject Subject Range Query Range Percent Splice Strand
Sbp2-RA 37..977 17..957 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:38 Download gff for BS06601.complete
Subject Subject Range Query Range Percent Splice Strand
Sbp2-RA 28..981 9..965 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:20:59 Download gff for BS06601.complete
Subject Subject Range Query Range Percent Splice Strand
Sbp2-RA 37..977 17..957 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:20:59 Download gff for BS06601.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8304193..8304686 17..510 100 -> Plus
3L 8304748..8304968 511..731 100 -> Plus
3L 8305022..8305247 732..957 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:48:14 Download gff for BS06601.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8297293..8297786 17..510 100 -> Plus
arm_3L 8297848..8298068 511..731 100 -> Plus
arm_3L 8298122..8298347 732..957 100   Plus

BS06601.pep Sequence

Translation from 16 to 957

> BS06601.pep
MTEKIRRSRNQDVQDTAIKITPRSSKYKNQHRKREQQTSLLDFVIKPRPK
TQRQTKAHKLQKTHLAITRGSYIVYKPKGKTRLDPKKKITRLKKSVRVYR
TSKKAEREVAENDLEGVPVVGQDINPNAIPLEQQVQNLSLSKTPAPNNPS
QAKTVHAIHSRRFRSYCDNCTRPRLKELSTQLLRDLDRFQKRAFAKNEIK
ARAHPRLVLGVREALARLRINKVKLLFLATDCEICPGESGLDATIEGLKF
QCQQQQVPYCFPLLRRELSYALQKRAQICCVAILDFDGANATYADLLNEI
EDARAEYKRRTAS*

BS06601.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
Sbp2-PA 313 CG7066-PA 1..313 1..313 1604 100 Plus