Clone BS06602 Report

Search the DGRC for BS06602

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:66
Well:2
Vector:pDNR-Dual
Associated Gene/Transcriptobst-E-RA
Protein status:BS06602.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06602.3prime Sequence

759 bp (758 high quality bases) assembled on 2005-12-04

> BS06602.3prime
ATGGTCTAGAAAGCTTTTAGTTCTTCCTGGCGTGAAGACGAGCAGCCTTG
ATTTGGGCACCCTTTTCACGGATGGCACTGCTGCAGTTGGGCACGTTCTC
GATGTCGTCGCACTGGTTCAGCTCCTGGTTGAAAGCCTGGTCCTCGCCGC
AGCCAATGCGACGCGGACGTCCCTCGATACAGATGAAGTACACCTGGCAA
TTGTCCTGCGACGGGTGGAAGGTGTAGTCAGCCTCCTGCTCGCCGAGCAG
CTCAGATCTGGGTGCCGGCGCTGGGCAGCGGAAGCCCAGGAAGGCCTCGG
CGTCACAGTCCTCCACCTGATCGGGCCAATCGCACTTGTAGGTGGCCGGA
TTCCAGGCCAGACCCTCGGGGCAGTCGAACACGAAGCCACGGCCCGCGGC
GCAGTTCATGAACTGTCCACAATGGCTGGCATCACCCATGCGATAGTATC
CGAACTGGTGGGGGCACTCATCCGTTGGCTGAGCGGCCTGCAGGCGGGCC
TGGCCCTGGGTGCACTCCACGTCGATCGGATAGCCGCAGGGGTAACCCGT
GGACTTTTCGTTGTACAGCAGACCGTCGGGGCAGAGCTTCTCCTCGGCCA
CTCCGTTCTTGCACTCAATGTAGGCATCGCAGGATCCGGACACGGGAGCA
GTTCCATTCGCCTCCTTGCATGCACCGGCGGCGGCGGCAGCCATTGAGCC
AAACATGGCAACGCACAATAGAGCACTGATTAAGATTTTAGCCATGTCGA
CTGATAACT

BS06602.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG11142-PA 729 CG11142-RA 1..729 745..17 3645 100 Minus
CG11142-PB 750 CG11142-RB 1..57 745..689 285 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
obst-E-RA 994 CG11142-RA 128..856 745..17 3645 100 Minus
obst-E-RB 998 CG11142-RB 128..184 745..689 285 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:56:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5763598..5764272 17..691 3375 100 Plus
2L 23513712 2L 5765961..5766015 691..745 275 100 Plus
Blast to na_te.dros performed on 2015-02-03 12:56:47 has no hits.

BS06602.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:18 Download gff for BS06602.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11142-PA 1..729 17..745 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:09 Download gff for BS06602.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11142-PA 1..729 17..745 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:55:26 Download gff for BS06602.3prime
Subject Subject Range Query Range Percent Splice Strand
obst-E-RA 128..856 17..745 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:45:45 Download gff for BS06602.3prime
Subject Subject Range Query Range Percent Splice Strand
obst-E-RA 128..856 17..745 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:45:45 Download gff for BS06602.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5763602..5764271 21..690 100 <- Plus
2L 5765961..5766015 691..745 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:55:26 Download gff for BS06602.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5763602..5764271 21..690 100 <- Plus
arm_2L 5765961..5766015 691..745 100   Plus

BS06602.5prime Sequence

759 bp (758 high quality bases) assembled on 2005-12-04

> BS06602.5prime
GAAGTTATCAGTCGACATGGCTAAAATCTTAATCAGTGCTCTATTGTGCG
TTGCCATGTTTGGCTCAATGGCTGCCGCCGCCGCCGGTGCATGCAAGGAG
GCGAATGGAACTGCTCCCGTGTCCGGATCCTGCGATGCCTACATTGAGTG
CAAGAACGGAGTGGCCGAGGAGAAGCTCTGCCCCGACGGTCTGCTGTACA
ACGAAAAGTCCACGGGTTACCCCTGCGGCTATCCGATCGACGTGGAGTGC
ACCCAGGGCCAGGCCCGCCTGCAGGCCGCTCAGCCAACGGATGAGTGCCC
CCACCAGTTCGGATACTATCGCATGGGTGATGCCAGCCATTGTGGACAGT
TCATGAACTGCGCCGCGGGCCGTGGCTTCGTGTTCGACTGCCCCGAGGGT
CTGGCCTGGAATCCGGCCACCTACAAGTGCGATTGGCCCGATCAGGTGGA
GGACTGTGACGCCGAGGCCTTCCTGGGCTTCCGCTGCCCAGCGCCGGCAC
CCAGATCTGAGCTGCTCGGCGAGCAGGAGGCTGACTACACCTTCCACCCG
TCGCAGGACAATTGCCAGGTGTACTTCATCTGTATCGAGGGACGTCCGCG
TCGCATTGGCTGCGGCGAGGACCAGGCTTTCAACCAGGAGCTGAACCAGT
GCGACGACATCGAGAACGTGCCCAACTGCAGCAGTGCCATCCGTGAAAAG
GGTGCCCAAATCAAGGCTGCTCGTCTTCACGCCAGGAAGAACTAAAAGCT
TTCTAGACC

BS06602.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG11142-PA 729 CG11142-RA 1..729 17..745 3645 100 Plus
CG11142-PB 750 CG11142-RB 1..57 17..73 285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:14:21
Subject Length Description Subject Range Query Range Score Percent Strand
obst-E-RA 994 CG11142-RA 128..856 17..745 3645 100 Plus
obst-E-RB 998 CG11142-RB 128..184 17..73 285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5763598..5764272 745..71 3375 100 Minus
2L 23513712 2L 5765961..5766015 71..17 275 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:14:18 has no hits.

BS06602.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:19 Download gff for BS06602.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11142-PA 1..729 17..745 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:11 Download gff for BS06602.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11142-PA 1..729 17..745 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:38:12 Download gff for BS06602.5prime
Subject Subject Range Query Range Percent Splice Strand
obst-E-RA 128..856 17..745 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:53 Download gff for BS06602.5prime
Subject Subject Range Query Range Percent Splice Strand
obst-E-RA 128..856 17..745 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:53 Download gff for BS06602.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5765961..5766015 17..71 100   Minus
2L 5763602..5764271 72..741 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:38:12 Download gff for BS06602.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5763602..5764271 72..741 100 <- Minus
arm_2L 5765961..5766015 17..71 100   Minus

BS06602.complete Sequence

761 bp (761 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635556

> BS06602.complete
GAAGTTATCAGTCGACATGGCTAAAATCTTAATCAGTGCTCTATTGTGCG
TTGCCATGTTTGGCTCAATGGCTGCCGCCGCCGCCGGTGCATGCAAGGAG
GCGAATGGAACTGCTCCCGTGTCCGGATCCTGCGATGCCTACATTGAGTG
CAAGAACGGAGTGGCCGAGGAGAAGCTCTGCCCCGACGGTCTGCTGTACA
ACGAAAAGTCCACGGGTTACCCCTGCGGCTATCCGATCGACGTGGAGTGC
ACCCAGGGCCAGGCCCGCCTGCAGGCCGCTCAGCCAACGGATGAGTGCCC
CCACCAGTTCGGATACTATCGCATGGGTGATGCCAGCCATTGTGGACAGT
TCATGAACTGCGCCGCGGGCCGTGGCTTCGTGTTCGACTGCCCCGAGGGT
CTGGCCTGGAATCCGGCCACCTACAAGTGCGATTGGCCCGATCAGGTGGA
GGACTGTGACGCCGAGGCCTTCCTGGGCTTCCGCTGCCCAGCGCCGGCAC
CCAGATCTGAGCTGCTCGGCGAGCAGGAGGCTGACTACACCTTCCACCCG
TCGCAGGACAATTGCCAGGTGTACTTCATCTGTATCGAGGGACGTCCGCG
TCGCATTGGCTGCGGCGAGGACCAGGCTTTCAACCAGGAGCTGAACCAGT
GCGACGACATCGAGAACGTGCCCAACTGCAGCAGTGCCATCCGTGAAAAG
GGTGCCCAAATCAAGGCTGCTCGTCTTCACGCCAGGAAGAACTAAAAGCT
TTCTAGACCAT

BS06602.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:55:54
Subject Length Description Subject Range Query Range Score Percent Strand
obst-E-RA 729 CG11142-PA 1..729 17..745 3645 100 Plus
obst-E-RB 750 CG11142-PB 1..57 17..73 285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:55:55
Subject Length Description Subject Range Query Range Score Percent Strand
obst-E-RA 994 CG11142-RA 128..856 17..745 3645 100 Plus
obst-E-RB 998 CG11142-RB 128..184 17..73 285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:55:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5763598..5764272 745..71 3375 100 Minus
2L 23513712 2L 5765961..5766015 71..17 275 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:55:53 has no hits.

BS06602.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:40 Download gff for BS06602.complete
Subject Subject Range Query Range Percent Splice Strand
obst-E-RA 1..729 17..745 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:36 Download gff for BS06602.complete
Subject Subject Range Query Range Percent Splice Strand
obst-E-RA 127..855 17..745 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:44 Download gff for BS06602.complete
Subject Subject Range Query Range Percent Splice Strand
obst-E-RA 128..854 17..743 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:41 Download gff for BS06602.complete
Subject Subject Range Query Range Percent Splice Strand
obst-E-RA 127..855 17..745 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:18 Download gff for BS06602.complete
Subject Subject Range Query Range Percent Splice Strand
obst-E-RA 128..854 17..743 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:18 Download gff for BS06602.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5763600..5764271 72..743 100 <- Minus
2L 5765961..5766015 17..71 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:44 Download gff for BS06602.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5763600..5764271 72..743 100 <- Minus
arm_2L 5765961..5766015 17..71 100   Minus

BS06602.pep Sequence

Translation from 16 to 744

> BS06602.pep
MAKILISALLCVAMFGSMAAAAAGACKEANGTAPVSGSCDAYIECKNGVA
EEKLCPDGLLYNEKSTGYPCGYPIDVECTQGQARLQAAQPTDECPHQFGY
YRMGDASHCGQFMNCAAGRGFVFDCPEGLAWNPATYKCDWPDQVEDCDAE
AFLGFRCPAPAPRSELLGEQEADYTFHPSQDNCQVYFICIEGRPRRIGCG
EDQAFNQELNQCDDIENVPNCSSAIREKGAQIKAARLHARKN*

BS06602.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:17
Subject Length Description Subject Range Query Range Score Percent Strand
obst-E-PA 242 CG11142-PA 1..242 1..242 1342 100 Plus
obst-E-PB 249 CG11142-PB 1..232 1..228 564 48.9 Plus
obst-B-PA 337 CG4778-PA 86..285 26..228 339 34.3 Plus
obst-A-PB 237 CG17052-PB 8..225 6..221 317 32.3 Plus
obst-A-PA 237 CG17052-PA 8..225 6..221 317 32.3 Plus