Clone Sequence Records
BS06602.3prime Sequence
759 bp (758 high quality bases) assembled on 2005-12-04
> BS06602.3prime
ATGGTCTAGAAAGCTTTTAGTTCTTCCTGGCGTGAAGACGAGCAGCCTTG
ATTTGGGCACCCTTTTCACGGATGGCACTGCTGCAGTTGGGCACGTTCTC
GATGTCGTCGCACTGGTTCAGCTCCTGGTTGAAAGCCTGGTCCTCGCCGC
AGCCAATGCGACGCGGACGTCCCTCGATACAGATGAAGTACACCTGGCAA
TTGTCCTGCGACGGGTGGAAGGTGTAGTCAGCCTCCTGCTCGCCGAGCAG
CTCAGATCTGGGTGCCGGCGCTGGGCAGCGGAAGCCCAGGAAGGCCTCGG
CGTCACAGTCCTCCACCTGATCGGGCCAATCGCACTTGTAGGTGGCCGGA
TTCCAGGCCAGACCCTCGGGGCAGTCGAACACGAAGCCACGGCCCGCGGC
GCAGTTCATGAACTGTCCACAATGGCTGGCATCACCCATGCGATAGTATC
CGAACTGGTGGGGGCACTCATCCGTTGGCTGAGCGGCCTGCAGGCGGGCC
TGGCCCTGGGTGCACTCCACGTCGATCGGATAGCCGCAGGGGTAACCCGT
GGACTTTTCGTTGTACAGCAGACCGTCGGGGCAGAGCTTCTCCTCGGCCA
CTCCGTTCTTGCACTCAATGTAGGCATCGCAGGATCCGGACACGGGAGCA
GTTCCATTCGCCTCCTTGCATGCACCGGCGGCGGCGGCAGCCATTGAGCC
AAACATGGCAACGCACAATAGAGCACTGATTAAGATTTTAGCCATGTCGA
CTGATAACT
BS06602.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11142-PA | 729 | CG11142-RA | 1..729 | 745..17 | 3645 | 100 | Minus |
CG11142-PB | 750 | CG11142-RB | 1..57 | 745..689 | 285 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:56:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
obst-E-RA | 994 | CG11142-RA | 128..856 | 745..17 | 3645 | 100 | Minus |
obst-E-RB | 998 | CG11142-RB | 128..184 | 745..689 | 285 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:56:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5763598..5764272 | 17..691 | 3375 | 100 | Plus |
2L | 23513712 | 2L | 5765961..5766015 | 691..745 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 12:56:47 has no hits.
BS06602.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:18 Download gff for
BS06602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11142-PA | 1..729 | 17..745 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:09 Download gff for
BS06602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11142-PA | 1..729 | 17..745 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:55:26 Download gff for
BS06602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
obst-E-RA | 128..856 | 17..745 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:45:45 Download gff for
BS06602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
obst-E-RA | 128..856 | 17..745 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:45:45 Download gff for
BS06602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5763602..5764271 | 21..690 | 100 | <- | Plus |
2L | 5765961..5766015 | 691..745 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:55:26 Download gff for
BS06602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5763602..5764271 | 21..690 | 100 | <- | Plus |
arm_2L | 5765961..5766015 | 691..745 | 100 | | Plus |
BS06602.5prime Sequence
759 bp (758 high quality bases) assembled on 2005-12-04
> BS06602.5prime
GAAGTTATCAGTCGACATGGCTAAAATCTTAATCAGTGCTCTATTGTGCG
TTGCCATGTTTGGCTCAATGGCTGCCGCCGCCGCCGGTGCATGCAAGGAG
GCGAATGGAACTGCTCCCGTGTCCGGATCCTGCGATGCCTACATTGAGTG
CAAGAACGGAGTGGCCGAGGAGAAGCTCTGCCCCGACGGTCTGCTGTACA
ACGAAAAGTCCACGGGTTACCCCTGCGGCTATCCGATCGACGTGGAGTGC
ACCCAGGGCCAGGCCCGCCTGCAGGCCGCTCAGCCAACGGATGAGTGCCC
CCACCAGTTCGGATACTATCGCATGGGTGATGCCAGCCATTGTGGACAGT
TCATGAACTGCGCCGCGGGCCGTGGCTTCGTGTTCGACTGCCCCGAGGGT
CTGGCCTGGAATCCGGCCACCTACAAGTGCGATTGGCCCGATCAGGTGGA
GGACTGTGACGCCGAGGCCTTCCTGGGCTTCCGCTGCCCAGCGCCGGCAC
CCAGATCTGAGCTGCTCGGCGAGCAGGAGGCTGACTACACCTTCCACCCG
TCGCAGGACAATTGCCAGGTGTACTTCATCTGTATCGAGGGACGTCCGCG
TCGCATTGGCTGCGGCGAGGACCAGGCTTTCAACCAGGAGCTGAACCAGT
GCGACGACATCGAGAACGTGCCCAACTGCAGCAGTGCCATCCGTGAAAAG
GGTGCCCAAATCAAGGCTGCTCGTCTTCACGCCAGGAAGAACTAAAAGCT
TTCTAGACC
BS06602.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11142-PA | 729 | CG11142-RA | 1..729 | 17..745 | 3645 | 100 | Plus |
CG11142-PB | 750 | CG11142-RB | 1..57 | 17..73 | 285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:14:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
obst-E-RA | 994 | CG11142-RA | 128..856 | 17..745 | 3645 | 100 | Plus |
obst-E-RB | 998 | CG11142-RB | 128..184 | 17..73 | 285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:14:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5763598..5764272 | 745..71 | 3375 | 100 | Minus |
2L | 23513712 | 2L | 5765961..5766015 | 71..17 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:14:18 has no hits.
BS06602.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:19 Download gff for
BS06602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11142-PA | 1..729 | 17..745 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:11 Download gff for
BS06602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11142-PA | 1..729 | 17..745 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:38:12 Download gff for
BS06602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
obst-E-RA | 128..856 | 17..745 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:53 Download gff for
BS06602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
obst-E-RA | 128..856 | 17..745 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:53 Download gff for
BS06602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5765961..5766015 | 17..71 | 100 | | Minus |
2L | 5763602..5764271 | 72..741 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:38:12 Download gff for
BS06602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5763602..5764271 | 72..741 | 100 | <- | Minus |
arm_2L | 5765961..5766015 | 17..71 | 100 | | Minus |
BS06602.complete Sequence
761 bp (761 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635556
> BS06602.complete
GAAGTTATCAGTCGACATGGCTAAAATCTTAATCAGTGCTCTATTGTGCG
TTGCCATGTTTGGCTCAATGGCTGCCGCCGCCGCCGGTGCATGCAAGGAG
GCGAATGGAACTGCTCCCGTGTCCGGATCCTGCGATGCCTACATTGAGTG
CAAGAACGGAGTGGCCGAGGAGAAGCTCTGCCCCGACGGTCTGCTGTACA
ACGAAAAGTCCACGGGTTACCCCTGCGGCTATCCGATCGACGTGGAGTGC
ACCCAGGGCCAGGCCCGCCTGCAGGCCGCTCAGCCAACGGATGAGTGCCC
CCACCAGTTCGGATACTATCGCATGGGTGATGCCAGCCATTGTGGACAGT
TCATGAACTGCGCCGCGGGCCGTGGCTTCGTGTTCGACTGCCCCGAGGGT
CTGGCCTGGAATCCGGCCACCTACAAGTGCGATTGGCCCGATCAGGTGGA
GGACTGTGACGCCGAGGCCTTCCTGGGCTTCCGCTGCCCAGCGCCGGCAC
CCAGATCTGAGCTGCTCGGCGAGCAGGAGGCTGACTACACCTTCCACCCG
TCGCAGGACAATTGCCAGGTGTACTTCATCTGTATCGAGGGACGTCCGCG
TCGCATTGGCTGCGGCGAGGACCAGGCTTTCAACCAGGAGCTGAACCAGT
GCGACGACATCGAGAACGTGCCCAACTGCAGCAGTGCCATCCGTGAAAAG
GGTGCCCAAATCAAGGCTGCTCGTCTTCACGCCAGGAAGAACTAAAAGCT
TTCTAGACCAT
BS06602.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:55:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
obst-E-RA | 729 | CG11142-PA | 1..729 | 17..745 | 3645 | 100 | Plus |
obst-E-RB | 750 | CG11142-PB | 1..57 | 17..73 | 285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:55:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
obst-E-RA | 994 | CG11142-RA | 128..856 | 17..745 | 3645 | 100 | Plus |
obst-E-RB | 998 | CG11142-RB | 128..184 | 17..73 | 285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:55:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5763598..5764272 | 745..71 | 3375 | 100 | Minus |
2L | 23513712 | 2L | 5765961..5766015 | 71..17 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:55:53 has no hits.
BS06602.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:40 Download gff for
BS06602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
obst-E-RA | 1..729 | 17..745 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:36 Download gff for
BS06602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
obst-E-RA | 127..855 | 17..745 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:44 Download gff for
BS06602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
obst-E-RA | 128..854 | 17..743 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:41 Download gff for
BS06602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
obst-E-RA | 127..855 | 17..745 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:18 Download gff for
BS06602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
obst-E-RA | 128..854 | 17..743 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:18 Download gff for
BS06602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5763600..5764271 | 72..743 | 100 | <- | Minus |
2L | 5765961..5766015 | 17..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:44 Download gff for
BS06602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5763600..5764271 | 72..743 | 100 | <- | Minus |
arm_2L | 5765961..5766015 | 17..71 | 100 | | Minus |
BS06602.pep Sequence
Translation from 16 to 744
> BS06602.pep
MAKILISALLCVAMFGSMAAAAAGACKEANGTAPVSGSCDAYIECKNGVA
EEKLCPDGLLYNEKSTGYPCGYPIDVECTQGQARLQAAQPTDECPHQFGY
YRMGDASHCGQFMNCAAGRGFVFDCPEGLAWNPATYKCDWPDQVEDCDAE
AFLGFRCPAPAPRSELLGEQEADYTFHPSQDNCQVYFICIEGRPRRIGCG
EDQAFNQELNQCDDIENVPNCSSAIREKGAQIKAARLHARKN*
BS06602.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
obst-E-PA | 242 | CG11142-PA | 1..242 | 1..242 | 1342 | 100 | Plus |
obst-E-PB | 249 | CG11142-PB | 1..232 | 1..228 | 564 | 48.9 | Plus |
obst-B-PA | 337 | CG4778-PA | 86..285 | 26..228 | 339 | 34.3 | Plus |
obst-A-PB | 237 | CG17052-PB | 8..225 | 6..221 | 317 | 32.3 | Plus |
obst-A-PA | 237 | CG17052-PA | 8..225 | 6..221 | 317 | 32.3 | Plus |