Clone BS06604 Report

Search the DGRC for BS06604

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:66
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCG12123-RA
Protein status:BS06604.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06604.5prime Sequence

687 bp (686 high quality bases) assembled on 2005-12-04

> BS06604.5prime
GAAGTTATCAGTCGACATGTCGGATTCGCTGATCATTTGCGTTTCCGACT
ACTGGCGGCGATGTCATTACCACAATCGTCAAAATCGTGAAGCCGGCGAC
GCCTGGCCAGAAGCCAAACCGCTGCGGAGGCTGTGCATCGATGTGGACGC
CATCAATGGTAATTACTATCTTCGCGAGTTCCTGCACCAGCACGTGCTTG
CCCAGAGCCTTATGCACAATCATGGTGTCCAGCTGGTCTGGCTGCAATTC
GAGGAACCGGAGAAGCACACCATTGACTACAAATTCGCCGACATGCTGGC
ACACACGCTGTGGGAGCGCATCGAGGTGGAGCACCTCATGTCCTGGCTGT
CCACACTGGGCGGCGGATTCTCCGCCCTTGGCGAGCAGTTCGAGCGATGT
GCGAAAACGGCTGGCAAGATTTCGCTGCAGCAGTTAAAGATTGGCATGCG
ACTCGGTGATCCCTTCCTGCAGACGCGCTGCAAGCTCTACTACAGCATTT
CGCTAATCCAGCGTGGTCAACTACGGATGGCGAAGCATTTGATCCGACAG
CAGTATAAGTTTGCGAGTAGAAACATCGAGAAGGATGTGCGCCTGATGCG
GATGTGTCTGGGCATTTGGCGGCGACTTAGCTACGAGTACGAGCAGCGAA
GACTGCGGAAAGGTGGCAACTAAAAGCTTTCTAGACC

BS06604.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG12123-PA 657 CG12123-RA 1..657 17..673 3285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG12123-RA 1044 CG12123-RA 224..880 17..673 3285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:34:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8441741..8442125 401..17 1925 100 Minus
X 23542271 X 8441411..8441683 673..401 1365 100 Minus
Blast to na_te.dros performed on 2015-02-04 02:34:06 has no hits.

BS06604.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:23 Download gff for BS06604.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12123-PA 1..657 17..673 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:16 Download gff for BS06604.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12123-PA 1..657 17..673 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:51:47 Download gff for BS06604.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12123-RA 222..883 13..679 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:37:35 Download gff for BS06604.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12123-RA 222..883 13..679 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:37:35 Download gff for BS06604.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8441408..8441683 401..679 98 <- Minus
X 8441742..8442127 13..400 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:51:47 Download gff for BS06604.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8335441..8335716 401..679 98 <- Minus
arm_X 8335775..8336160 13..400 99   Minus

BS06604.3prime Sequence

687 bp (686 high quality bases) assembled on 2005-12-04

> BS06604.3prime
ATGGTCTAGAAAGCTTTTAGTTGCCACCTTTCCGCAGTCTTCGCTGCTCG
TACTCGTAGCTAAGTCGCCGCCAAATGCCCAGACACATCCGCATCAGGCG
CACATCCTTCTCGATGTTTCTACTCGCAAACTTATACTGCTGTCGGATCA
AATGCTTCGCCATCCGTAGTTGACCACGCTGGATTAGCGAAATGCTGTAG
TAGAGCTTGCAGCGCGTCTGCAGGAAGGGATCACCGAGTCGCATGCCAAT
CTTTAACTGCTGCAGCGAAATCTTGCCAGCCGTTTTCGCACATCGCTCGA
ACTGCTCGCCAAGGGCGGAGAATCCGCCGCCCAGTGTGGACAGCCAGGAC
ATGAGGTGCTCCACCTCGATGCGCTCCCACAGCGTGTGTGCCAGCATGTC
GGCGAATTTGTAGTCAATGGTGTGCTTCTCCGGTTCCTCGAATTGCAGCC
AGACCAGCTGGACACCATGATTGTGCATAAGGCTCTGGGCAAGCACGTGC
TGGTGCAGGAACTCGCGAAGATAGTAATTACCATTGATGGCGTCCACATC
GATGCACAGCCTCCGCAGCGGTTTGGCTTCTGGCCAGGCGTCGCCGGCTT
CACGATTTTGACGATTGTGGTAATGACATCGCCGCCAGTAGTCGGAAACG
CAAATGATCAGCGAATCCGACATGTCGACTGATAACT

BS06604.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG12123-PA 657 CG12123-RA 1..657 673..17 3285 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:52:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG12123-RA 1044 CG12123-RA 224..880 673..17 3285 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 14:52:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8441741..8442125 289..673 1925 100 Plus
X 23542271 X 8441411..8441683 17..289 1365 100 Plus
Blast to na_te.dros performed on 2015-01-30 14:52:19 has no hits.

BS06604.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:22 Download gff for BS06604.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12123-PA 1..657 17..673 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:14 Download gff for BS06604.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12123-PA 1..657 17..673 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:07:18 Download gff for BS06604.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12123-RA 222..883 11..677 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:37:45 Download gff for BS06604.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12123-RA 222..883 11..677 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:37:45 Download gff for BS06604.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8441408..8441683 11..289 98 <- Plus
X 8441742..8442127 290..677 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:07:18 Download gff for BS06604.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8335441..8335716 11..289 98 <- Plus
arm_X 8335775..8336160 290..677 99   Plus

BS06604.complete Sequence

689 bp (689 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635557

> BS06604.complete
GAAGTTATCAGTCGACATGTCGGATTCGCTGATCATTTGCGTTTCCGACT
ACTGGCGGCGATGTCATTACCACAATCGTCAAAATCGTGAAGCCGGCGAC
GCCTGGCCAGAAGCCAAACCGCTGCGGAGGCTGTGCATCGATGTGGACGC
CATCAATGGTAATTACTATCTTCGCGAGTTCCTGCACCAGCACGTGCTTG
CCCAGAGCCTTATGCACAATCATGGTGTCCAGCTGGTCTGGCTGCAATTC
GAGGAACCGGAGAAGCACACCATTGACTACAAATTCGCCGACATGCTGGC
ACACACGCTGTGGGAGCGCATCGAGGTGGAGCACCTCATGTCCTGGCTGT
CCACACTGGGCGGCGGATTCTCCGCCCTTGGCGAGCAGTTCGAGCGATGT
GCGAAAACGGCTGGCAAGATTTCGCTGCAGCAGTTAAAGATTGGCATGCG
ACTCGGTGATCCCTTCCTGCAGACGCGCTGCAAGCTCTACTACAGCATTT
CGCTAATCCAGCGTGGTCAACTACGGATGGCGAAGCATTTGATCCGACAG
CAGTATAAGTTTGCGAGTAGAAACATCGAGAAGGATGTGCGCCTGATGCG
GATGTGTCTGGGCATTTGGCGGCGACTTAGCTACGAGTACGAGCAGCGAA
GACTGCGGAAAGGTGGCAACTAAAAGCTTTCTAGACCAT

BS06604.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:16:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG12123-RA 657 CG12123-PA 1..657 17..673 3285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG12123-RA 1044 CG12123-RA 224..880 17..673 3285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8441741..8442125 401..17 1925 100 Minus
X 23542271 X 8441411..8441683 673..401 1365 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:16:30 has no hits.

BS06604.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:43 Download gff for BS06604.complete
Subject Subject Range Query Range Percent Splice Strand
CG12123-RA 1..657 17..673 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:38 Download gff for BS06604.complete
Subject Subject Range Query Range Percent Splice Strand
CG12123-RA 215..876 13..679 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:32 Download gff for BS06604.complete
Subject Subject Range Query Range Percent Splice Strand
CG12123-RA 224..878 17..671 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:44 Download gff for BS06604.complete
Subject Subject Range Query Range Percent Splice Strand
CG12123-RA 215..876 13..679 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:24 Download gff for BS06604.complete
Subject Subject Range Query Range Percent Splice Strand
CG12123-RA 224..878 17..671 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:24 Download gff for BS06604.complete
Subject Subject Range Query Range Percent Splice Strand
X 8441742..8442125 17..400 100   Minus
X 8441413..8441683 401..671 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:32 Download gff for BS06604.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8335446..8335716 401..671 100 <- Minus
arm_X 8335775..8336158 17..400 100   Minus

BS06604.pep Sequence

Translation from 16 to 672

> BS06604.pep
MSDSLIICVSDYWRRCHYHNRQNREAGDAWPEAKPLRRLCIDVDAINGNY
YLREFLHQHVLAQSLMHNHGVQLVWLQFEEPEKHTIDYKFADMLAHTLWE
RIEVEHLMSWLSTLGGGFSALGEQFERCAKTAGKISLQQLKIGMRLGDPF
LQTRCKLYYSISLIQRGQLRMAKHLIRQQYKFASRNIEKDVRLMRMCLGI
WRRLSYEYEQRRLRKGGN*

BS06604.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG12123-PA 218 CG12123-PA 1..218 1..218 1174 100 Plus