Clone Sequence Records
BS06604.5prime Sequence
687 bp (686 high quality bases) assembled on 2005-12-04
> BS06604.5prime
GAAGTTATCAGTCGACATGTCGGATTCGCTGATCATTTGCGTTTCCGACT
ACTGGCGGCGATGTCATTACCACAATCGTCAAAATCGTGAAGCCGGCGAC
GCCTGGCCAGAAGCCAAACCGCTGCGGAGGCTGTGCATCGATGTGGACGC
CATCAATGGTAATTACTATCTTCGCGAGTTCCTGCACCAGCACGTGCTTG
CCCAGAGCCTTATGCACAATCATGGTGTCCAGCTGGTCTGGCTGCAATTC
GAGGAACCGGAGAAGCACACCATTGACTACAAATTCGCCGACATGCTGGC
ACACACGCTGTGGGAGCGCATCGAGGTGGAGCACCTCATGTCCTGGCTGT
CCACACTGGGCGGCGGATTCTCCGCCCTTGGCGAGCAGTTCGAGCGATGT
GCGAAAACGGCTGGCAAGATTTCGCTGCAGCAGTTAAAGATTGGCATGCG
ACTCGGTGATCCCTTCCTGCAGACGCGCTGCAAGCTCTACTACAGCATTT
CGCTAATCCAGCGTGGTCAACTACGGATGGCGAAGCATTTGATCCGACAG
CAGTATAAGTTTGCGAGTAGAAACATCGAGAAGGATGTGCGCCTGATGCG
GATGTGTCTGGGCATTTGGCGGCGACTTAGCTACGAGTACGAGCAGCGAA
GACTGCGGAAAGGTGGCAACTAAAAGCTTTCTAGACC
BS06604.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12123-PA | 657 | CG12123-RA | 1..657 | 17..673 | 3285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:34:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12123-RA | 1044 | CG12123-RA | 224..880 | 17..673 | 3285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:34:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8441741..8442125 | 401..17 | 1925 | 100 | Minus |
X | 23542271 | X | 8441411..8441683 | 673..401 | 1365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:34:06 has no hits.
BS06604.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:23 Download gff for
BS06604.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12123-PA | 1..657 | 17..673 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:16 Download gff for
BS06604.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12123-PA | 1..657 | 17..673 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:51:47 Download gff for
BS06604.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12123-RA | 222..883 | 13..679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:37:35 Download gff for
BS06604.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12123-RA | 222..883 | 13..679 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:37:35 Download gff for
BS06604.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8441408..8441683 | 401..679 | 98 | <- | Minus |
X | 8441742..8442127 | 13..400 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:51:47 Download gff for
BS06604.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8335441..8335716 | 401..679 | 98 | <- | Minus |
arm_X | 8335775..8336160 | 13..400 | 99 | | Minus |
BS06604.3prime Sequence
687 bp (686 high quality bases) assembled on 2005-12-04
> BS06604.3prime
ATGGTCTAGAAAGCTTTTAGTTGCCACCTTTCCGCAGTCTTCGCTGCTCG
TACTCGTAGCTAAGTCGCCGCCAAATGCCCAGACACATCCGCATCAGGCG
CACATCCTTCTCGATGTTTCTACTCGCAAACTTATACTGCTGTCGGATCA
AATGCTTCGCCATCCGTAGTTGACCACGCTGGATTAGCGAAATGCTGTAG
TAGAGCTTGCAGCGCGTCTGCAGGAAGGGATCACCGAGTCGCATGCCAAT
CTTTAACTGCTGCAGCGAAATCTTGCCAGCCGTTTTCGCACATCGCTCGA
ACTGCTCGCCAAGGGCGGAGAATCCGCCGCCCAGTGTGGACAGCCAGGAC
ATGAGGTGCTCCACCTCGATGCGCTCCCACAGCGTGTGTGCCAGCATGTC
GGCGAATTTGTAGTCAATGGTGTGCTTCTCCGGTTCCTCGAATTGCAGCC
AGACCAGCTGGACACCATGATTGTGCATAAGGCTCTGGGCAAGCACGTGC
TGGTGCAGGAACTCGCGAAGATAGTAATTACCATTGATGGCGTCCACATC
GATGCACAGCCTCCGCAGCGGTTTGGCTTCTGGCCAGGCGTCGCCGGCTT
CACGATTTTGACGATTGTGGTAATGACATCGCCGCCAGTAGTCGGAAACG
CAAATGATCAGCGAATCCGACATGTCGACTGATAACT
BS06604.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12123-PA | 657 | CG12123-RA | 1..657 | 673..17 | 3285 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:52:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12123-RA | 1044 | CG12123-RA | 224..880 | 673..17 | 3285 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 14:52:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8441741..8442125 | 289..673 | 1925 | 100 | Plus |
X | 23542271 | X | 8441411..8441683 | 17..289 | 1365 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 14:52:19 has no hits.
BS06604.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:22 Download gff for
BS06604.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12123-PA | 1..657 | 17..673 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:14 Download gff for
BS06604.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12123-PA | 1..657 | 17..673 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:07:18 Download gff for
BS06604.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12123-RA | 222..883 | 11..677 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:37:45 Download gff for
BS06604.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12123-RA | 222..883 | 11..677 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:37:45 Download gff for
BS06604.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8441408..8441683 | 11..289 | 98 | <- | Plus |
X | 8441742..8442127 | 290..677 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:07:18 Download gff for
BS06604.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8335441..8335716 | 11..289 | 98 | <- | Plus |
arm_X | 8335775..8336160 | 290..677 | 99 | | Plus |
BS06604.complete Sequence
689 bp (689 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635557
> BS06604.complete
GAAGTTATCAGTCGACATGTCGGATTCGCTGATCATTTGCGTTTCCGACT
ACTGGCGGCGATGTCATTACCACAATCGTCAAAATCGTGAAGCCGGCGAC
GCCTGGCCAGAAGCCAAACCGCTGCGGAGGCTGTGCATCGATGTGGACGC
CATCAATGGTAATTACTATCTTCGCGAGTTCCTGCACCAGCACGTGCTTG
CCCAGAGCCTTATGCACAATCATGGTGTCCAGCTGGTCTGGCTGCAATTC
GAGGAACCGGAGAAGCACACCATTGACTACAAATTCGCCGACATGCTGGC
ACACACGCTGTGGGAGCGCATCGAGGTGGAGCACCTCATGTCCTGGCTGT
CCACACTGGGCGGCGGATTCTCCGCCCTTGGCGAGCAGTTCGAGCGATGT
GCGAAAACGGCTGGCAAGATTTCGCTGCAGCAGTTAAAGATTGGCATGCG
ACTCGGTGATCCCTTCCTGCAGACGCGCTGCAAGCTCTACTACAGCATTT
CGCTAATCCAGCGTGGTCAACTACGGATGGCGAAGCATTTGATCCGACAG
CAGTATAAGTTTGCGAGTAGAAACATCGAGAAGGATGTGCGCCTGATGCG
GATGTGTCTGGGCATTTGGCGGCGACTTAGCTACGAGTACGAGCAGCGAA
GACTGCGGAAAGGTGGCAACTAAAAGCTTTCTAGACCAT
BS06604.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:16:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12123-RA | 657 | CG12123-PA | 1..657 | 17..673 | 3285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12123-RA | 1044 | CG12123-RA | 224..880 | 17..673 | 3285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8441741..8442125 | 401..17 | 1925 | 100 | Minus |
X | 23542271 | X | 8441411..8441683 | 673..401 | 1365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:16:30 has no hits.
BS06604.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:43 Download gff for
BS06604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12123-RA | 1..657 | 17..673 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:38 Download gff for
BS06604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12123-RA | 215..876 | 13..679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:32 Download gff for
BS06604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12123-RA | 224..878 | 17..671 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:44 Download gff for
BS06604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12123-RA | 215..876 | 13..679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:24 Download gff for
BS06604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12123-RA | 224..878 | 17..671 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:24 Download gff for
BS06604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8441742..8442125 | 17..400 | 100 | | Minus |
X | 8441413..8441683 | 401..671 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:32 Download gff for
BS06604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8335446..8335716 | 401..671 | 100 | <- | Minus |
arm_X | 8335775..8336158 | 17..400 | 100 | | Minus |
BS06604.pep Sequence
Translation from 16 to 672
> BS06604.pep
MSDSLIICVSDYWRRCHYHNRQNREAGDAWPEAKPLRRLCIDVDAINGNY
YLREFLHQHVLAQSLMHNHGVQLVWLQFEEPEKHTIDYKFADMLAHTLWE
RIEVEHLMSWLSTLGGGFSALGEQFERCAKTAGKISLQQLKIGMRLGDPF
LQTRCKLYYSISLIQRGQLRMAKHLIRQQYKFASRNIEKDVRLMRMCLGI
WRRLSYEYEQRRLRKGGN*
BS06604.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12123-PA | 218 | CG12123-PA | 1..218 | 1..218 | 1174 | 100 | Plus |