Clone BS06605 Report

Search the DGRC for BS06605

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:66
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptCG3262-RF
Protein status:BS06605.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06605.3prime Sequence

654 bp (653 high quality bases) assembled on 2005-12-04

> BS06605.3prime
ATGGTCTAGAAAGCTTTTAATGTGCACTGTTATTTTGATTTTGATTACAT
CTTTGTTCGTTAAGTATTTGTGTAATCTCCTCAGCCAATTGGGTAAATAG
ATAAGAGTACTTGCTGTCCGGATATTTTATTACAACAGGCACTCCACTCT
CGTTGCTATCCGCTATTCGTGAGTCTAACGGAAGAGAAATTAGCTTGCGC
GGTAGAGAACTTATACGGCTGTCTTTAAAAAACTCCAATCGTTGATTACA
GTTCTGACAAATGGTGTACTTCATGTTCTCTACTACGCCAAAGATAGGAA
CATTTAACTTTTCGTACATGCTTGCACCTTTCAAGGTCACCTGAACAGCT
GCAGTATGAGGTGTTGTTACCAGGATAACCCCTGTGATAGGTGCATGCTG
GGATAGTGAGAGATGTACATCTCCAGTGCCCGGTGGAGTATCTATAACTA
GGACATCTAGAAGCCCCCAATCAGTACCTTTTAGCAGTCGTTGTATTGCT
GACATTACAAGAGGACCTCGCCAGATAACAGAGGTCTCTACAGGTGTCAG
CATGCCCATAGACAAGCACTTTACATTGTAGTTTTGCGGCGGGATCATCA
AATTCTTATCGTTCACAACCGGCTCACCATGGACATTCATGTCGACTGAT
AACT

BS06605.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG3262-PA 894 CG3262-RA 270..894 641..17 3125 100 Minus
CG3262-PB 624 CG3262-RB 1..624 640..17 3120 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:56:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG3262-RF 900 CG3262-RF 258..884 641..15 3135 100 Minus
CG3262-RE 7023 CG3262-RE 274..900 641..15 3135 100 Minus
CG3262-RD 1013 CG3262-RD 274..900 641..15 3135 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:55:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22240239..22240865 641..15 3135 100 Minus
Blast to na_te.dros performed 2015-02-03 12:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
transib3 2883 transib3 TRANSIB3 2883bp 1498..1536 451..489 114 76.9 Plus

BS06605.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:24 Download gff for BS06605.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3262-PA 255..882 17..645 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:17 Download gff for BS06605.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3262-PA 267..894 17..645 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:55:19 Download gff for BS06605.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3262-RD 271..900 15..645 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:45:40 Download gff for BS06605.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3262-RD 271..900 15..645 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:45:40 Download gff for BS06605.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 22240236..22240868 13..645 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:55:19 Download gff for BS06605.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22240236..22240868 13..645 99 <- Minus

BS06605.5prime Sequence

654 bp (653 high quality bases) assembled on 2005-12-04

> BS06605.5prime
GAAGTTATCAGTCGACATGAATGTCCATGGTGAGCCGGTTGTGAACGATA
AGAATTTGATGATCCCGCCGCAAAACTACAATGTAAAGTGCTTGTCTATG
GGCATGCTGACACCTGTAGAGACCTCTGTTATCTGGCGAGGTCCTCTTGT
AATGTCAGCAATACAACGACTGCTAAAAGGTACTGATTGGGGGCTTCTAG
ATGTCCTAGTTATAGATACTCCACCGGGCACTGGAGATGTACATCTCTCA
CTATCCCAGCATGCACCTATCACAGGGGTTATCCTGGTAACAACACCTCA
TACTGCAGCTGTTCAGGTGACCTTGAAAGGTGCAAGCATGTACGAAAAGT
TAAATGTTCCTATCTTTGGCGTAGTAGAGAACATGAAGTACACCATTTGT
CAGAACTGTAATCAACGATTGGAGTTTTTTAAAGACAGCCGTATAAGTTC
TCTACCGCGCAAGCTAATTTCTCTTCCGTTAGACTCACGAATAGCGGATA
GCAACGAGAGTGGAGTGCCTGTTGTAATAAAATATCCGGACAGCAAGTAC
TCTTATCTATTTACCCAATTGGCTGAGGAGATTACACAAATACTTAACGA
ACAAAGATGTAATCAAAATCAAAATAACAGTGCACATTAAAAGCTTTCTA
GACC

BS06605.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG3262-PA 894 CG3262-RA 270..894 16..640 3125 100 Plus
CG3262-PB 624 CG3262-RB 1..624 17..640 3120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3262-RF 900 CG3262-RF 258..884 16..642 3135 100 Plus
CG3262-RE 7023 CG3262-RE 274..900 16..642 3135 100 Plus
CG3262-RD 1013 CG3262-RD 274..900 16..642 3135 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:33:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22240239..22240865 16..642 3135 100 Plus
Blast to na_te.dros performed 2015-02-04 02:33:55
Subject Length Description Subject Range Query Range Score Percent Strand
transib3 2883 transib3 TRANSIB3 2883bp 1498..1536 206..168 114 76.9 Minus

BS06605.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:26 Download gff for BS06605.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3262-PA 255..882 12..640 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:18 Download gff for BS06605.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3262-PA 267..894 12..640 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:51:45 Download gff for BS06605.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3262-RD 271..900 12..642 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:37:35 Download gff for BS06605.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3262-RD 271..900 12..642 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:37:35 Download gff for BS06605.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 22240236..22240865 12..642 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:51:45 Download gff for BS06605.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22240236..22240865 12..642 99   Plus

BS06605.complete Sequence

656 bp (656 high quality bases) assembled on 2005-12-21

GenBank Submission: KX804150

> BS06605.complete
GAAGTTATCAGTCGACATGAATGTCCATGGTGAGCCGGTTGTGAACGATA
AGAATTTGATGATCCCGCCGCAAAACTACAATGTAAAGTGCTTGTCTATG
GGCATGCTGACACCTGTAGAGACCTCTGTTATCTGGCGAGGTCCTCTTGT
AATGTCAGCAATACAACGACTGCTAAAAGGTACTGATTGGGGGCTTCTAG
ATGTCCTAGTTATAGATACTCCACCGGGCACTGGAGATGTACATCTCTCA
CTATCCCAGCATGCACCTATCACAGGGGTTATCCTGGTAACAACACCTCA
TACTGCAGCTGTTCAGGTGACCTTGAAAGGTGCAAGCATGTACGAAAAGT
TAAATGTTCCTATCTTTGGCGTAGTAGAGAACATGAAGTACACCATTTGT
CAGAACTGTAATCAACGATTGGAGTTTTTTAAAGACAGCCGTATAAGTTC
TCTACCGCGCAAGCTAATTTCTCTTCCGTTAGACTCACGAATAGCGGATA
GCAACGAGAGTGGAGTGCCTGTTGTAATAAAATATCCGGACAGCAAGTAC
TCTTATCTATTTACCCAATTGGCTGAGGAGATTACACAAATACTTAACGA
ACAAAGATGTAATCAAAATCAAAATAACAGTGCACATTAAAAGCTTTCTA
GACCAT

BS06605.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3262-RE 882 CG3262-PE 258..882 16..640 3125 100 Plus
CG3262-RD 882 CG3262-PD 258..882 16..640 3125 100 Plus
CG3262-RF 624 CG3262-PF 1..624 17..640 3120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:41:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3262-RF 900 CG3262-RF 258..884 16..642 3135 100 Plus
CG3262-RE 7023 CG3262-RE 274..900 16..642 3135 100 Plus
CG3262-RD 1013 CG3262-RD 274..900 16..642 3135 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22240239..22240865 16..642 3135 100 Plus
Blast to na_te.dros performed 2014-11-28 05:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
transib3 2883 transib3 TRANSIB3 2883bp 1498..1536 206..168 114 76.9 Minus

BS06605.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:46 Download gff for BS06605.complete
Subject Subject Range Query Range Percent Splice Strand
CG3262-RD 255..882 12..640 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:43:46 Download gff for BS06605.complete
Subject Subject Range Query Range Percent Splice Strand
CG3262-RD 285..906 17..638 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:36 Download gff for BS06605.complete
Subject Subject Range Query Range Percent Splice Strand
CG3262-RD 275..896 17..638 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:47 Download gff for BS06605.complete
Subject Subject Range Query Range Percent Splice Strand
CG3262-RD 281..910 12..642 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:16:19 Download gff for BS06605.complete
Subject Subject Range Query Range Percent Splice Strand
CG3262-RD 275..896 17..638 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:16:19 Download gff for BS06605.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22240240..22240861 17..638 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:36 Download gff for BS06605.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22240240..22240861 17..638 100   Plus

BS06605.pep Sequence

Translation from 16 to 639

> BS06605.pep
MNVHGEPVVNDKNLMIPPQNYNVKCLSMGMLTPVETSVIWRGPLVMSAIQ
RLLKGTDWGLLDVLVIDTPPGTGDVHLSLSQHAPITGVILVTTPHTAAVQ
VTLKGASMYEKLNVPIFGVVENMKYTICQNCNQRLEFFKDSRISSLPRKL
ISLPLDSRIADSNESGVPVVIKYPDSKYSYLFTQLAEEITQILNEQRCNQ
NQNNSAH*

BS06605.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG3262-PF 207 CG3262-PF 1..207 1..207 1077 100 Plus
CG3262-PE 293 CG3262-PE 87..293 1..207 1077 100 Plus
CG3262-PD 293 CG3262-PD 87..293 1..207 1077 100 Plus
CG17904-PA 311 CG17904-PA 127..285 22..166 229 35.8 Plus
CG4858-PA 260 CG4858-PA 75..258 19..193 224 31 Plus