Clone Sequence Records
BS06605.3prime Sequence
654 bp (653 high quality bases) assembled on 2005-12-04
> BS06605.3prime
ATGGTCTAGAAAGCTTTTAATGTGCACTGTTATTTTGATTTTGATTACAT
CTTTGTTCGTTAAGTATTTGTGTAATCTCCTCAGCCAATTGGGTAAATAG
ATAAGAGTACTTGCTGTCCGGATATTTTATTACAACAGGCACTCCACTCT
CGTTGCTATCCGCTATTCGTGAGTCTAACGGAAGAGAAATTAGCTTGCGC
GGTAGAGAACTTATACGGCTGTCTTTAAAAAACTCCAATCGTTGATTACA
GTTCTGACAAATGGTGTACTTCATGTTCTCTACTACGCCAAAGATAGGAA
CATTTAACTTTTCGTACATGCTTGCACCTTTCAAGGTCACCTGAACAGCT
GCAGTATGAGGTGTTGTTACCAGGATAACCCCTGTGATAGGTGCATGCTG
GGATAGTGAGAGATGTACATCTCCAGTGCCCGGTGGAGTATCTATAACTA
GGACATCTAGAAGCCCCCAATCAGTACCTTTTAGCAGTCGTTGTATTGCT
GACATTACAAGAGGACCTCGCCAGATAACAGAGGTCTCTACAGGTGTCAG
CATGCCCATAGACAAGCACTTTACATTGTAGTTTTGCGGCGGGATCATCA
AATTCTTATCGTTCACAACCGGCTCACCATGGACATTCATGTCGACTGAT
AACT
BS06605.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3262-PA | 894 | CG3262-RA | 270..894 | 641..17 | 3125 | 100 | Minus |
CG3262-PB | 624 | CG3262-RB | 1..624 | 640..17 | 3120 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:56:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3262-RF | 900 | CG3262-RF | 258..884 | 641..15 | 3135 | 100 | Minus |
CG3262-RE | 7023 | CG3262-RE | 274..900 | 641..15 | 3135 | 100 | Minus |
CG3262-RD | 1013 | CG3262-RD | 274..900 | 641..15 | 3135 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:55:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22240239..22240865 | 641..15 | 3135 | 100 | Minus |
Blast to na_te.dros performed 2015-02-03 12:56:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
transib3 | 2883 | transib3 TRANSIB3 2883bp | 1498..1536 | 451..489 | 114 | 76.9 | Plus |
BS06605.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:24 Download gff for
BS06605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3262-PA | 255..882 | 17..645 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:17 Download gff for
BS06605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3262-PA | 267..894 | 17..645 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:55:19 Download gff for
BS06605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3262-RD | 271..900 | 15..645 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:45:40 Download gff for
BS06605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3262-RD | 271..900 | 15..645 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:45:40 Download gff for
BS06605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22240236..22240868 | 13..645 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:55:19 Download gff for
BS06605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22240236..22240868 | 13..645 | 99 | <- | Minus |
BS06605.5prime Sequence
654 bp (653 high quality bases) assembled on 2005-12-04
> BS06605.5prime
GAAGTTATCAGTCGACATGAATGTCCATGGTGAGCCGGTTGTGAACGATA
AGAATTTGATGATCCCGCCGCAAAACTACAATGTAAAGTGCTTGTCTATG
GGCATGCTGACACCTGTAGAGACCTCTGTTATCTGGCGAGGTCCTCTTGT
AATGTCAGCAATACAACGACTGCTAAAAGGTACTGATTGGGGGCTTCTAG
ATGTCCTAGTTATAGATACTCCACCGGGCACTGGAGATGTACATCTCTCA
CTATCCCAGCATGCACCTATCACAGGGGTTATCCTGGTAACAACACCTCA
TACTGCAGCTGTTCAGGTGACCTTGAAAGGTGCAAGCATGTACGAAAAGT
TAAATGTTCCTATCTTTGGCGTAGTAGAGAACATGAAGTACACCATTTGT
CAGAACTGTAATCAACGATTGGAGTTTTTTAAAGACAGCCGTATAAGTTC
TCTACCGCGCAAGCTAATTTCTCTTCCGTTAGACTCACGAATAGCGGATA
GCAACGAGAGTGGAGTGCCTGTTGTAATAAAATATCCGGACAGCAAGTAC
TCTTATCTATTTACCCAATTGGCTGAGGAGATTACACAAATACTTAACGA
ACAAAGATGTAATCAAAATCAAAATAACAGTGCACATTAAAAGCTTTCTA
GACC
BS06605.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3262-PA | 894 | CG3262-RA | 270..894 | 16..640 | 3125 | 100 | Plus |
CG3262-PB | 624 | CG3262-RB | 1..624 | 17..640 | 3120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:33:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3262-RF | 900 | CG3262-RF | 258..884 | 16..642 | 3135 | 100 | Plus |
CG3262-RE | 7023 | CG3262-RE | 274..900 | 16..642 | 3135 | 100 | Plus |
CG3262-RD | 1013 | CG3262-RD | 274..900 | 16..642 | 3135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:33:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22240239..22240865 | 16..642 | 3135 | 100 | Plus |
Blast to na_te.dros performed 2015-02-04 02:33:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
transib3 | 2883 | transib3 TRANSIB3 2883bp | 1498..1536 | 206..168 | 114 | 76.9 | Minus |
BS06605.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:26 Download gff for
BS06605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3262-PA | 255..882 | 12..640 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:18 Download gff for
BS06605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3262-PA | 267..894 | 12..640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:51:45 Download gff for
BS06605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3262-RD | 271..900 | 12..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:37:35 Download gff for
BS06605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3262-RD | 271..900 | 12..642 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:37:35 Download gff for
BS06605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22240236..22240865 | 12..642 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:51:45 Download gff for
BS06605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22240236..22240865 | 12..642 | 99 | | Plus |
BS06605.complete Sequence
656 bp (656 high quality bases) assembled on 2005-12-21
GenBank Submission: KX804150
> BS06605.complete
GAAGTTATCAGTCGACATGAATGTCCATGGTGAGCCGGTTGTGAACGATA
AGAATTTGATGATCCCGCCGCAAAACTACAATGTAAAGTGCTTGTCTATG
GGCATGCTGACACCTGTAGAGACCTCTGTTATCTGGCGAGGTCCTCTTGT
AATGTCAGCAATACAACGACTGCTAAAAGGTACTGATTGGGGGCTTCTAG
ATGTCCTAGTTATAGATACTCCACCGGGCACTGGAGATGTACATCTCTCA
CTATCCCAGCATGCACCTATCACAGGGGTTATCCTGGTAACAACACCTCA
TACTGCAGCTGTTCAGGTGACCTTGAAAGGTGCAAGCATGTACGAAAAGT
TAAATGTTCCTATCTTTGGCGTAGTAGAGAACATGAAGTACACCATTTGT
CAGAACTGTAATCAACGATTGGAGTTTTTTAAAGACAGCCGTATAAGTTC
TCTACCGCGCAAGCTAATTTCTCTTCCGTTAGACTCACGAATAGCGGATA
GCAACGAGAGTGGAGTGCCTGTTGTAATAAAATATCCGGACAGCAAGTAC
TCTTATCTATTTACCCAATTGGCTGAGGAGATTACACAAATACTTAACGA
ACAAAGATGTAATCAAAATCAAAATAACAGTGCACATTAAAAGCTTTCTA
GACCAT
BS06605.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:41:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3262-RE | 882 | CG3262-PE | 258..882 | 16..640 | 3125 | 100 | Plus |
CG3262-RD | 882 | CG3262-PD | 258..882 | 16..640 | 3125 | 100 | Plus |
CG3262-RF | 624 | CG3262-PF | 1..624 | 17..640 | 3120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:41:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3262-RF | 900 | CG3262-RF | 258..884 | 16..642 | 3135 | 100 | Plus |
CG3262-RE | 7023 | CG3262-RE | 274..900 | 16..642 | 3135 | 100 | Plus |
CG3262-RD | 1013 | CG3262-RD | 274..900 | 16..642 | 3135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:41:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22240239..22240865 | 16..642 | 3135 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 05:41:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
transib3 | 2883 | transib3 TRANSIB3 2883bp | 1498..1536 | 206..168 | 114 | 76.9 | Minus |
BS06605.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:46 Download gff for
BS06605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3262-RD | 255..882 | 12..640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:43:46 Download gff for
BS06605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3262-RD | 285..906 | 17..638 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:36 Download gff for
BS06605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3262-RD | 275..896 | 17..638 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:47 Download gff for
BS06605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3262-RD | 281..910 | 12..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:16:19 Download gff for
BS06605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3262-RD | 275..896 | 17..638 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:16:19 Download gff for
BS06605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22240240..22240861 | 17..638 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:36 Download gff for
BS06605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22240240..22240861 | 17..638 | 100 | | Plus |
BS06605.pep Sequence
Translation from 16 to 639
> BS06605.pep
MNVHGEPVVNDKNLMIPPQNYNVKCLSMGMLTPVETSVIWRGPLVMSAIQ
RLLKGTDWGLLDVLVIDTPPGTGDVHLSLSQHAPITGVILVTTPHTAAVQ
VTLKGASMYEKLNVPIFGVVENMKYTICQNCNQRLEFFKDSRISSLPRKL
ISLPLDSRIADSNESGVPVVIKYPDSKYSYLFTQLAEEITQILNEQRCNQ
NQNNSAH*
BS06605.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3262-PF | 207 | CG3262-PF | 1..207 | 1..207 | 1077 | 100 | Plus |
CG3262-PE | 293 | CG3262-PE | 87..293 | 1..207 | 1077 | 100 | Plus |
CG3262-PD | 293 | CG3262-PD | 87..293 | 1..207 | 1077 | 100 | Plus |
CG17904-PA | 311 | CG17904-PA | 127..285 | 22..166 | 229 | 35.8 | Plus |
CG4858-PA | 260 | CG4858-PA | 75..258 | 19..193 | 224 | 31 | Plus |