Clone BS06608 Report

Search the DGRC for BS06608

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:66
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptGstT4-RA
Protein status:BS06608.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06608.3prime Sequence

744 bp (743 high quality bases) assembled on 2005-12-04

> BS06608.3prime
ATGGTCTAGAAAGCTTCTATTGCTTCACCGCCTGGGCGACGCCCTGCTGC
TGACCACTGCCACTGCCCTTCAGCTTGGCCTCGAACTCGCCCAGCACCTC
CTTGTAGTGGGGACCCAGCTCCTCGCGCACCGTTTCATACCAACGCGCCA
GCTTGTTGCGATTCTGGAACGCATTGTAGCCAATGGATTTCGGCTGATCG
ATTTCGCAGATGGCGCTGAGATCCGCATACGAAATGTTGTCGCCCATCAT
GAACTTGCGGGAGTTGAGGAATAGCTGTTCGAACTCGTTGAGCGTGTGCT
CCAGCTGCTTGCTGGCGAGATTCACCGCATTATCGGCTGGCCGGGTCTTT
TGCAGATACGGCACCAGCCACTTTTGCTGGAAATACTCCGTGGTGGCCAC
ACCCATGTTGGTCTGCTGCCAGGCCAGGTACTCATCGATGCGACTACGGC
CGAGATGTCGTCGCGGATACCAGTGCTCCGGCACCAACTTTTCGCGTGCC
AGATGCCGGAAGATGGCCACATTCTCGGACAGCTGGTAGCCGTGATCCGT
GATCGCCGGCAGCTTGCGGAACCGGTTCACATTGTCCCGGAACTCGCCAG
TCAGGTGCTCGCCTTTGAGCATCGATATGGGTATGGCCTCGAAGGGGATC
TTGGAGGCCTCCAGGAGGATGTAGAGCGCCCGGCTCGATTGGTTCAGGAA
ATCGAAGTAGAACTTGAGTGGCTGCGACATGTCGACTGATAACT

BS06608.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG1681-PA 714 CG1681-RA 1..714 730..17 3570 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
GstT4-RA 1220 CG1681-RA 215..932 734..17 3575 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:29:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13408286..13408576 614..324 1455 100 Minus
X 23542271 X 13408863..13409035 189..17 865 100 Minus
X 23542271 X 13408655..13408791 326..190 685 100 Minus
X 23542271 X 13404963..13405089 734..608 605 98.4 Minus
Blast to na_te.dros performed on 2015-02-01 08:29:49 has no hits.

BS06608.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:30 Download gff for BS06608.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1681-PA 1..714 17..730 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:25 Download gff for BS06608.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1681-PA 1..714 17..730 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:25:28 Download gff for BS06608.3prime
Subject Subject Range Query Range Percent Splice Strand
GstT4-RA 206..932 17..744 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:52:40 Download gff for BS06608.3prime
Subject Subject Range Query Range Percent Splice Strand
GstT4-RA 206..932 17..744 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:52:40 Download gff for BS06608.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13404954..13405084 613..744 96 -> Minus
X 13408288..13408574 326..612 100 -> Minus
X 13408656..13408791 190..325 100 -> Minus
X 13408863..13409035 17..189 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:25:28 Download gff for BS06608.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13298987..13299117 613..744 96 -> Minus
arm_X 13302321..13302607 326..612 100 -> Minus
arm_X 13302689..13302824 190..325 100 -> Minus
arm_X 13302896..13303068 17..189 100   Minus

BS06608.5prime Sequence

744 bp (743 high quality bases) assembled on 2005-12-04

> BS06608.5prime
GAAGTTATCAGTCGACATGTCGCAGCCACTCAAGTTCTACTTCGATTTCC
TGAACCAATCGAGCCGGGCGCTCTACATCCTCCTGGAGGCCTCCAAGATC
CCCTTCGAGGCCATACCCATATCGATGCTCAAAGGCGAGCACCTGACTGG
CGAGTTCCGGGACAATGTGAACCGGTTCCGCAAGCTGCCGGCGATCACGG
ATCACGGCTACCAGCTGTCCGAGAATGTGGCCATCTTCCGGCATCTGGCA
CGCGAAAAGTTGGTGCCGGAGCACTGGTATCCGCGACGACATCTCGGCCG
TAGTCGCATCGATGAGTACCTGGCCTGGCAGCAGACCAACATGGGTGTGG
CCACCACGGAGTATTTCCAGCAAAAGTGGCTGGTGCCGTATCTGCAAAAG
ACCCGGCCAGCCGATAATGCGGTGAATCTCGCCAGCAAGCAGCTGGAGCA
CACGCTCAACGAGTTCGAACAGCTATTCCTCAACTCCCGCAAGTTCATGA
TGGGCGACAACATTTCGTATGCGGATCTCAGCGCCATCTGCGAAATCGAT
CAGCCGAAATCCATTGGCTACAATGCGTTCCAGAATCGCAACAAGCTGGC
GCGTTGGTATGAAACGGTGCGCGAGGAGCTGGGTCCCCACTACAAGGAGG
TGCTGGGCGAGTTCGAGGCCAAGCTGAAGGGCAGTGGCAGTGGTCAGCAG
CAGGGCGTCGCCCAGGCGGTGAAGCAATAGAAGCTTTCTAGACC

BS06608.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG1681-PA 714 CG1681-RA 1..714 17..730 3570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
GstT4-RA 1220 CG1681-RA 215..932 13..730 3575 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13408286..13408576 133..423 1455 100 Plus
X 23542271 X 13408863..13409035 558..730 865 100 Plus
X 23542271 X 13408655..13408791 421..557 685 100 Plus
X 23542271 X 13404963..13405089 13..139 605 98.4 Plus
Blast to na_te.dros performed on 2015-02-09 22:40:34 has no hits.

BS06608.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:31 Download gff for BS06608.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1681-PA 1..714 17..730 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:26 Download gff for BS06608.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1681-PA 1..714 17..730 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:27:11 Download gff for BS06608.5prime
Subject Subject Range Query Range Percent Splice Strand
GstT4-RA 209..932 6..730 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:47:25 Download gff for BS06608.5prime
Subject Subject Range Query Range Percent Splice Strand
GstT4-RA 209..932 6..730 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:47:25 Download gff for BS06608.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13404957..13405084 6..134 97 -> Plus
X 13408288..13408574 135..421 100 -> Plus
X 13408656..13408791 422..557 100 -> Plus
X 13408863..13409035 558..730 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:27:11 Download gff for BS06608.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13298990..13299117 6..134 97 -> Plus
arm_X 13302321..13302607 135..421 100 -> Plus
arm_X 13302689..13302824 422..557 100 -> Plus
arm_X 13302896..13303068 558..730 100   Plus

BS06608.complete Sequence

746 bp (746 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635558

> BS06608.complete
GAAGTTATCAGTCGACATGTCGCAGCCACTCAAGTTCTACTTCGATTTCC
TGAACCAATCGAGCCGGGCGCTCTACATCCTCCTGGAGGCCTCCAAGATC
CCCTTCGAGGCCATACCCATATCGATGCTCAAAGGCGAGCACCTGACTGG
CGAGTTCCGGGACAATGTGAACCGGTTCCGCAAGCTGCCGGCGATCACGG
ATCACGGCTACCAGCTGTCCGAGAATGTGGCCATCTTCCGGCATCTGGCA
CGCGAAAAGTTGGTGCCGGAGCACTGGTATCCGCGACGACATCTCGGCCG
TAGTCGCATCGATGAGTACCTGGCCTGGCAGCAGACCAACATGGGTGTGG
CCACCACGGAGTATTTCCAGCAAAAGTGGCTGGTGCCGTATCTGCAAAAG
ACCCGGCCAGCCGATAATGCGGTGAATCTCGCCAGCAAGCAGCTGGAGCA
CACGCTCAACGAGTTCGAACAGCTATTCCTCAACTCCCGCAAGTTCATGA
TGGGCGACAACATTTCGTATGCGGATCTCAGCGCCATCTGCGAAATCGAT
CAGCCGAAATCCATTGGCTACAATGCGTTCCAGAATCGCAACAAGCTGGC
GCGTTGGTATGAAACGGTGCGCGAGGAGCTGGGTCCCCACTACAAGGAGG
TGCTGGGCGAGTTCGAGGCCAAGCTGAAGGGCAGTGGCAGTGGTCAGCAG
CAGGGCGTCGCCCAGGCGGTGAAGCAATAGAAGCTTTCTAGACCAT

BS06608.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:57:46
Subject Length Description Subject Range Query Range Score Percent Strand
GstT4-RA 714 CG1681-PA 1..714 17..730 3570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:57:48
Subject Length Description Subject Range Query Range Score Percent Strand
GstT4-RA 1220 CG1681-RA 215..932 13..730 3575 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:57:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13408286..13408576 133..423 1455 100 Plus
X 23542271 X 13408863..13409035 558..730 865 100 Plus
X 23542271 X 13408655..13408791 421..557 685 100 Plus
X 23542271 X 13404963..13405089 13..139 605 98.4 Plus
Blast to na_te.dros performed on 2014-11-27 19:57:45 has no hits.

BS06608.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:48 Download gff for BS06608.complete
Subject Subject Range Query Range Percent Splice Strand
CG1681-RA 1..714 17..730 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:41 Download gff for BS06608.complete
Subject Subject Range Query Range Percent Splice Strand
CG1681-RA 202..925 6..730 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:58 Download gff for BS06608.complete
Subject Subject Range Query Range Percent Splice Strand
GstT4-RA 219..932 17..730 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:49 Download gff for BS06608.complete
Subject Subject Range Query Range Percent Splice Strand
CG1681-RA 202..925 6..730 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:35 Download gff for BS06608.complete
Subject Subject Range Query Range Percent Splice Strand
GstT4-RA 219..932 17..730 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:35 Download gff for BS06608.complete
Subject Subject Range Query Range Percent Splice Strand
X 13404967..13405084 17..134 100 -> Plus
X 13408288..13408574 135..421 100 -> Plus
X 13408656..13408791 422..557 100 -> Plus
X 13408863..13409035 558..730 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:58 Download gff for BS06608.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13299000..13299117 17..134 100 -> Plus
arm_X 13302321..13302607 135..421 100 -> Plus
arm_X 13302689..13302824 422..557 100 -> Plus
arm_X 13302896..13303068 558..730 100   Plus

BS06608.pep Sequence

Translation from 16 to 729

> BS06608.pep
MSQPLKFYFDFLNQSSRALYILLEASKIPFEAIPISMLKGEHLTGEFRDN
VNRFRKLPAITDHGYQLSENVAIFRHLAREKLVPEHWYPRRHLGRSRIDE
YLAWQQTNMGVATTEYFQQKWLVPYLQKTRPADNAVNLASKQLEHTLNEF
EQLFLNSRKFMMGDNISYADLSAICEIDQPKSIGYNAFQNRNKLARWYET
VREELGPHYKEVLGEFEAKLKGSGSGQQQGVAQAVKQ*

BS06608.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
GstT4-PA 237 CG1681-PA 1..237 1..237 1245 100 Plus
GstT3-PC 228 CG1702-PC 1..223 1..224 461 36.6 Plus
GstT3-PA 228 CG1702-PA 1..223 1..224 461 36.6 Plus
GstT3-PB 268 CG1702-PB 41..263 1..224 461 36.6 Plus
GstT1-PA 228 CG30000-PA 1..211 1..211 393 39.4 Plus