Clone Sequence Records
BS06608.3prime Sequence
744 bp (743 high quality bases) assembled on 2005-12-04
> BS06608.3prime
ATGGTCTAGAAAGCTTCTATTGCTTCACCGCCTGGGCGACGCCCTGCTGC
TGACCACTGCCACTGCCCTTCAGCTTGGCCTCGAACTCGCCCAGCACCTC
CTTGTAGTGGGGACCCAGCTCCTCGCGCACCGTTTCATACCAACGCGCCA
GCTTGTTGCGATTCTGGAACGCATTGTAGCCAATGGATTTCGGCTGATCG
ATTTCGCAGATGGCGCTGAGATCCGCATACGAAATGTTGTCGCCCATCAT
GAACTTGCGGGAGTTGAGGAATAGCTGTTCGAACTCGTTGAGCGTGTGCT
CCAGCTGCTTGCTGGCGAGATTCACCGCATTATCGGCTGGCCGGGTCTTT
TGCAGATACGGCACCAGCCACTTTTGCTGGAAATACTCCGTGGTGGCCAC
ACCCATGTTGGTCTGCTGCCAGGCCAGGTACTCATCGATGCGACTACGGC
CGAGATGTCGTCGCGGATACCAGTGCTCCGGCACCAACTTTTCGCGTGCC
AGATGCCGGAAGATGGCCACATTCTCGGACAGCTGGTAGCCGTGATCCGT
GATCGCCGGCAGCTTGCGGAACCGGTTCACATTGTCCCGGAACTCGCCAG
TCAGGTGCTCGCCTTTGAGCATCGATATGGGTATGGCCTCGAAGGGGATC
TTGGAGGCCTCCAGGAGGATGTAGAGCGCCCGGCTCGATTGGTTCAGGAA
ATCGAAGTAGAACTTGAGTGGCTGCGACATGTCGACTGATAACT
BS06608.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1681-PA | 714 | CG1681-RA | 1..714 | 730..17 | 3570 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:29:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstT4-RA | 1220 | CG1681-RA | 215..932 | 734..17 | 3575 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:29:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13408286..13408576 | 614..324 | 1455 | 100 | Minus |
X | 23542271 | X | 13408863..13409035 | 189..17 | 865 | 100 | Minus |
X | 23542271 | X | 13408655..13408791 | 326..190 | 685 | 100 | Minus |
X | 23542271 | X | 13404963..13405089 | 734..608 | 605 | 98.4 | Minus |
Blast to na_te.dros performed on 2015-02-01 08:29:49 has no hits.
BS06608.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:30 Download gff for
BS06608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1681-PA | 1..714 | 17..730 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:25 Download gff for
BS06608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1681-PA | 1..714 | 17..730 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:25:28 Download gff for
BS06608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstT4-RA | 206..932 | 17..744 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:52:40 Download gff for
BS06608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstT4-RA | 206..932 | 17..744 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:52:40 Download gff for
BS06608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13404954..13405084 | 613..744 | 96 | -> | Minus |
X | 13408288..13408574 | 326..612 | 100 | -> | Minus |
X | 13408656..13408791 | 190..325 | 100 | -> | Minus |
X | 13408863..13409035 | 17..189 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:25:28 Download gff for
BS06608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13298987..13299117 | 613..744 | 96 | -> | Minus |
arm_X | 13302321..13302607 | 326..612 | 100 | -> | Minus |
arm_X | 13302689..13302824 | 190..325 | 100 | -> | Minus |
arm_X | 13302896..13303068 | 17..189 | 100 | | Minus |
BS06608.5prime Sequence
744 bp (743 high quality bases) assembled on 2005-12-04
> BS06608.5prime
GAAGTTATCAGTCGACATGTCGCAGCCACTCAAGTTCTACTTCGATTTCC
TGAACCAATCGAGCCGGGCGCTCTACATCCTCCTGGAGGCCTCCAAGATC
CCCTTCGAGGCCATACCCATATCGATGCTCAAAGGCGAGCACCTGACTGG
CGAGTTCCGGGACAATGTGAACCGGTTCCGCAAGCTGCCGGCGATCACGG
ATCACGGCTACCAGCTGTCCGAGAATGTGGCCATCTTCCGGCATCTGGCA
CGCGAAAAGTTGGTGCCGGAGCACTGGTATCCGCGACGACATCTCGGCCG
TAGTCGCATCGATGAGTACCTGGCCTGGCAGCAGACCAACATGGGTGTGG
CCACCACGGAGTATTTCCAGCAAAAGTGGCTGGTGCCGTATCTGCAAAAG
ACCCGGCCAGCCGATAATGCGGTGAATCTCGCCAGCAAGCAGCTGGAGCA
CACGCTCAACGAGTTCGAACAGCTATTCCTCAACTCCCGCAAGTTCATGA
TGGGCGACAACATTTCGTATGCGGATCTCAGCGCCATCTGCGAAATCGAT
CAGCCGAAATCCATTGGCTACAATGCGTTCCAGAATCGCAACAAGCTGGC
GCGTTGGTATGAAACGGTGCGCGAGGAGCTGGGTCCCCACTACAAGGAGG
TGCTGGGCGAGTTCGAGGCCAAGCTGAAGGGCAGTGGCAGTGGTCAGCAG
CAGGGCGTCGCCCAGGCGGTGAAGCAATAGAAGCTTTCTAGACC
BS06608.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1681-PA | 714 | CG1681-RA | 1..714 | 17..730 | 3570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:40:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstT4-RA | 1220 | CG1681-RA | 215..932 | 13..730 | 3575 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:40:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13408286..13408576 | 133..423 | 1455 | 100 | Plus |
X | 23542271 | X | 13408863..13409035 | 558..730 | 865 | 100 | Plus |
X | 23542271 | X | 13408655..13408791 | 421..557 | 685 | 100 | Plus |
X | 23542271 | X | 13404963..13405089 | 13..139 | 605 | 98.4 | Plus |
Blast to na_te.dros performed on 2015-02-09 22:40:34 has no hits.
BS06608.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:31 Download gff for
BS06608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1681-PA | 1..714 | 17..730 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:26 Download gff for
BS06608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1681-PA | 1..714 | 17..730 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:27:11 Download gff for
BS06608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstT4-RA | 209..932 | 6..730 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:47:25 Download gff for
BS06608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstT4-RA | 209..932 | 6..730 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:47:25 Download gff for
BS06608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13404957..13405084 | 6..134 | 97 | -> | Plus |
X | 13408288..13408574 | 135..421 | 100 | -> | Plus |
X | 13408656..13408791 | 422..557 | 100 | -> | Plus |
X | 13408863..13409035 | 558..730 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:27:11 Download gff for
BS06608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13298990..13299117 | 6..134 | 97 | -> | Plus |
arm_X | 13302321..13302607 | 135..421 | 100 | -> | Plus |
arm_X | 13302689..13302824 | 422..557 | 100 | -> | Plus |
arm_X | 13302896..13303068 | 558..730 | 100 | | Plus |
BS06608.complete Sequence
746 bp (746 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635558
> BS06608.complete
GAAGTTATCAGTCGACATGTCGCAGCCACTCAAGTTCTACTTCGATTTCC
TGAACCAATCGAGCCGGGCGCTCTACATCCTCCTGGAGGCCTCCAAGATC
CCCTTCGAGGCCATACCCATATCGATGCTCAAAGGCGAGCACCTGACTGG
CGAGTTCCGGGACAATGTGAACCGGTTCCGCAAGCTGCCGGCGATCACGG
ATCACGGCTACCAGCTGTCCGAGAATGTGGCCATCTTCCGGCATCTGGCA
CGCGAAAAGTTGGTGCCGGAGCACTGGTATCCGCGACGACATCTCGGCCG
TAGTCGCATCGATGAGTACCTGGCCTGGCAGCAGACCAACATGGGTGTGG
CCACCACGGAGTATTTCCAGCAAAAGTGGCTGGTGCCGTATCTGCAAAAG
ACCCGGCCAGCCGATAATGCGGTGAATCTCGCCAGCAAGCAGCTGGAGCA
CACGCTCAACGAGTTCGAACAGCTATTCCTCAACTCCCGCAAGTTCATGA
TGGGCGACAACATTTCGTATGCGGATCTCAGCGCCATCTGCGAAATCGAT
CAGCCGAAATCCATTGGCTACAATGCGTTCCAGAATCGCAACAAGCTGGC
GCGTTGGTATGAAACGGTGCGCGAGGAGCTGGGTCCCCACTACAAGGAGG
TGCTGGGCGAGTTCGAGGCCAAGCTGAAGGGCAGTGGCAGTGGTCAGCAG
CAGGGCGTCGCCCAGGCGGTGAAGCAATAGAAGCTTTCTAGACCAT
BS06608.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:57:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstT4-RA | 714 | CG1681-PA | 1..714 | 17..730 | 3570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:57:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstT4-RA | 1220 | CG1681-RA | 215..932 | 13..730 | 3575 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:57:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13408286..13408576 | 133..423 | 1455 | 100 | Plus |
X | 23542271 | X | 13408863..13409035 | 558..730 | 865 | 100 | Plus |
X | 23542271 | X | 13408655..13408791 | 421..557 | 685 | 100 | Plus |
X | 23542271 | X | 13404963..13405089 | 13..139 | 605 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:57:45 has no hits.
BS06608.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:48 Download gff for
BS06608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1681-RA | 1..714 | 17..730 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:41 Download gff for
BS06608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1681-RA | 202..925 | 6..730 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:58 Download gff for
BS06608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstT4-RA | 219..932 | 17..730 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:49 Download gff for
BS06608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1681-RA | 202..925 | 6..730 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:35 Download gff for
BS06608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstT4-RA | 219..932 | 17..730 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:35 Download gff for
BS06608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13404967..13405084 | 17..134 | 100 | -> | Plus |
X | 13408288..13408574 | 135..421 | 100 | -> | Plus |
X | 13408656..13408791 | 422..557 | 100 | -> | Plus |
X | 13408863..13409035 | 558..730 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:58 Download gff for
BS06608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13299000..13299117 | 17..134 | 100 | -> | Plus |
arm_X | 13302321..13302607 | 135..421 | 100 | -> | Plus |
arm_X | 13302689..13302824 | 422..557 | 100 | -> | Plus |
arm_X | 13302896..13303068 | 558..730 | 100 | | Plus |
BS06608.pep Sequence
Translation from 16 to 729
> BS06608.pep
MSQPLKFYFDFLNQSSRALYILLEASKIPFEAIPISMLKGEHLTGEFRDN
VNRFRKLPAITDHGYQLSENVAIFRHLAREKLVPEHWYPRRHLGRSRIDE
YLAWQQTNMGVATTEYFQQKWLVPYLQKTRPADNAVNLASKQLEHTLNEF
EQLFLNSRKFMMGDNISYADLSAICEIDQPKSIGYNAFQNRNKLARWYET
VREELGPHYKEVLGEFEAKLKGSGSGQQQGVAQAVKQ*
BS06608.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstT4-PA | 237 | CG1681-PA | 1..237 | 1..237 | 1245 | 100 | Plus |
GstT3-PC | 228 | CG1702-PC | 1..223 | 1..224 | 461 | 36.6 | Plus |
GstT3-PA | 228 | CG1702-PA | 1..223 | 1..224 | 461 | 36.6 | Plus |
GstT3-PB | 268 | CG1702-PB | 41..263 | 1..224 | 461 | 36.6 | Plus |
GstT1-PA | 228 | CG30000-PA | 1..211 | 1..211 | 393 | 39.4 | Plus |