Clone Sequence Records
BS06609.3prime Sequence
882 bp (806 high quality bases) assembled on 2005-12-04
> BS06609.3prime
ATGGTCTAGAAAGCTTTTATGCCAAATCCTCTTTGAGCATCCTTATCAGA
TCTTTTTGCATGTTGAGAAGCACACGAACGCGCCCCGAGTTGGAATGTGG
GTCAAAATCCGAACCATCCTGCAAATGAAGATCGAAAAAATTCCTATATC
TTTTCAACTCCTCCTCCAAAATGTCCTTGTTATCCGGAATCGGTTCACCA
CGCAGTTCCATTCGAATAAGCTCCATCAAATCGATCATACGTTTTCGAAC
ATCTTCGGGTGACTTCTGACTATCGGAATTTTGAAAAGCGTTGGGCTTCT
GGTTACTTCTGGGTGAAAATTTGGGCGGCGAGGATTGGGAACGACTGGTG
GACGATTGCGTGGCAGAGGGAGAAGAGGAATGGTTTAAACGGAAATTCGC
TTTTTGGTTTTTGTAAAGCTGACGCACTTCGTCATCACTTGTCGTGTGTA
CGGGACGGAGGAGCCGTCGGCTCCTCTGCACTTGTGGTTTTAAAATGGAT
GGGACACTTGTCCCGCCGGAAGGACGAGCACAATTCGAGAAGGTGTCCCA
GTACTCAGACGTCGACCGTTTACCGCTGCAGTCACATGACAAAGCGGAGG
AGGGCACTGCGGCTAGAGAAGATTGATTCAGATCACAGGAACGCTGCATT
TCAGTCAGGTTTGGGCATTGCTGATCCTCTGGCTTCTCCGTGAAGTCGAC
CCAAGCCAACTCCGCTGGCGGAGGCTCCTCGAANACGCCAGTCAGTCGCC
GTTGGTTTAGGCAAACACTGAAGTGACTCATGTACGCGTTGCGCATGCGC
AGATCGTAGAGAGTGTGGCAATGCATGGTGGTCAGTTTGTTGAGCCACAG
CCACGAAGTCCTAAACTCCGGCGTATTTTCGC
BS06609.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32295-PA | 1077 | CG32295-RA | 212..1077 | 882..17 | 4311 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:50:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32295-RA | 1175 | CG32295-RA | 258..1123 | 882..17 | 4319 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 14:50:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2525851..2526716 | 17..882 | 4319 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-01-30 14:50:42 has no hits.
BS06609.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:32 Download gff for
BS06609.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32295-PA | 212..1077 | 17..882 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:28 Download gff for
BS06609.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32295-PA | 212..1077 | 17..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:07:02 Download gff for
BS06609.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32295-RA | 258..1123 | 17..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:37:35 Download gff for
BS06609.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32295-RA | 258..1123 | 17..882 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:37:35 Download gff for
BS06609.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2525851..2526716 | 17..882 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:07:02 Download gff for
BS06609.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2525851..2526716 | 17..882 | 99 | | Plus |
BS06609.5prime Sequence
940 bp (799 high quality bases) assembled on 2005-12-04
> BS06609.5prime
GAAGTTATCAGTCGACATGCCAGATTCGAAAGTAGTGGCGAGTGATAGAA
GGAAGAGTAATAGCCATGCCAGCCTGCTCCTGACCACATCCTCCACTCAT
GTGCAGCACGCGGATAGCCATCGAGGTAATGCCAGGACACCGGATGAGAA
CGATCAAAATAGCTCGCTGCTCTCCAATGACTTTGTCCTGATGCTAGACT
GCTCGCCAAGTCCACAGGATGTGTTCTGCGAAAATACGCCGGAGTTTAGG
ACTTCGTGGCTGTGGCTCAACAAACTGACCACCATGCATTGCCACACTCT
CTACGATCTGCGCATGCGCAACGCGTACATGAGTCACTTCAGTGTTTGCC
TAAACCAACGGCGACTGACTGGCGTTTTCGAGGAGCCTCCGCCAGCGGAG
TTGGCTTGGGTCGACTTCACGGAGAAGCCAGAGGATCAGCAATGCCCAAA
CCTGACTGAAATGCAGCGTTCCTGTGATCTGAATCAATCTTCTCTAGCCG
CAGTGCCCTCCTCCGCTTTGTCATGTGACTGCAGCGGTAAACGGTCGACG
TCTGAGTACTGGGACACCTTCTCGAATTGTGCTCGTCCTTCCGGCGGGAC
AAGTGTCCCATCCATTTTAAAACCACAAGTGCAGAGGAGCCGACGGCTCC
TCCGTCCCGTACACACGACAAGTGATGACGAAGTGCGTCAGCTTTACAAA
AACCAAAAAGCGAATTTCCGTTTAAACCATTCCTCTTCTCCCTCTGCCAC
GCAATCGTCCACCAGTCGTTCCCAATCCTCGCCGCCCAAATTTTCACCCA
GAAGTAACCAGAAGCCCAACGCTTTTCAAATTCCGATAGTCAGAAGTCAC
CCGAAGATGTTCGAAAACGTATGATCGATTTGATGGAGCTTATTCAAATG
GAACTGCGTGGTGAACCGATTCCGGATAACAAGGAAATTT
BS06609.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32295-PA | 1077 | CG32295-RA | 1..814 | 17..830 | 4070 | 100 | Plus |
| CG32295-PA | 1077 | CG32295-RA | 813..920 | 828..935 | 515 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:37:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32295-RA | 1175 | CG32295-RA | 47..971 | 17..940 | 4570 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:37:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2526003..2526927 | 940..17 | 4545 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 14:37:29 has no hits.
BS06609.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:33 Download gff for
BS06609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32295-PA | 1..925 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:29 Download gff for
BS06609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32295-PA | 1..925 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:43:20 Download gff for
BS06609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32295-RA | 47..971 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:03:18 Download gff for
BS06609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32295-RA | 47..971 | 17..940 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:03:18 Download gff for
BS06609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2526003..2526927 | 17..940 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:43:20 Download gff for
BS06609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2526003..2526927 | 17..940 | 99 | | Minus |
BS06609.complete Sequence
1109 bp (1109 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635559
> BS06609.complete
GAAGTTATCAGTCGACATGCCAGATTCGAAAGTAGTGGCGAGTGATAGAA
GGAAGAGTAATAGCCATGCCAGCCTGCTCCTGACCACATCCTCCACTCAT
GTGCAGCACGCGGATAGCCATCGAGGTAATGCCAGGACACCGGATGAGAA
CGATCAAAATAGCTCGCTGCTCTCCAATGACTTTGTCCTGATGCTAGACT
GCTCGCCAAGTCCACAGGATGTGTTCTGCGAAAATACGCCGGAGTTTAGG
ACTTCGTGGCTGTGGCTCAACAAACTGACCACCATGCATTGCCACACTCT
CTACGATCTGCGCATGCGCAACGCGTACATGAGTCACTTCAGTGTTTGCC
TAAACCAACGGCGACTGACTGGCGTTTTCGAGGAGCCTCCGCCAGCGGAG
TTGGCTTGGGTCGACTTCACGGAGAAGCCAGAGGATCAGCAATGCCCAAA
CCTGACTGAAATGCAGCGTTCCTGTGATCTGAATCAATCTTCTCTAGCCG
CAGTGCCCTCCTCCGCTTTGTCATGTGACTGCAGCGGTAAACGGTCGACG
TCTGAGTACTGGGACACCTTCTCGAATTGTGCTCGTCCTTCCGGCGGGAC
AAGTGTCCCATCCATTTTAAAACCACAAGTGCAGAGGAGCCGACGGCTCC
TCCGTCCCGTACACACGACAAGTGATGACGAAGTGCGTCAGCTTTACAAA
AACCAAAAAGCGAATTTCCGTTTAAACCATTCCTCTTCTCCCTCTGCCAC
GCAATCGTCCACCAGTCGTTCCCAATCCTCGCCGCCCAAATTTTCACCCA
GAAGTAACCAGAAGCCCAACGCTTTTCAAAATTCCGATAGTCAGAAGTCA
CCCGAAGATGTTCGAAAACGTATGATCGATTTGATGGAGCTTATTCGAAT
GGAACTGCGTGGTGAACCGATTCCGGATAACAAGGACATTTTGGAGGAGG
AGTTGAAAAGATATAGGAATTTTTTCGATCTTCATTTGCAGGATGGTTCG
GATTTTGACCCACATTCCAACTCGGGGCGCGTTCGTGTGCTTCTCAACAT
GCAAAAAGATCTGATAAGGATGCTCAAAGAGGATTTGGCATAAAAGCTTT
CTAGACCAT
BS06609.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:54:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32295-RA | 1077 | CG32295-PA | 1..1077 | 17..1093 | 5385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:54:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32295-RA | 1175 | CG32295-RA | 47..1123 | 17..1093 | 5385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:54:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2525851..2526927 | 1093..17 | 5385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:54:47 has no hits.
BS06609.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:51 Download gff for
BS06609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32295-RA | 1..1077 | 17..1093 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:43 Download gff for
BS06609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32295-RA | 46..1122 | 17..1093 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:37 Download gff for
BS06609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32295-RA | 47..1121 | 17..1091 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:51 Download gff for
BS06609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32295-RA | 46..1122 | 17..1093 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:38 Download gff for
BS06609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32295-RA | 47..1121 | 17..1091 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:38 Download gff for
BS06609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2525853..2526927 | 17..1091 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:37 Download gff for
BS06609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2525853..2526927 | 17..1091 | 100 | | Minus |
BS06609.pep Sequence
Translation from 16 to 1092
> BS06609.pep
MPDSKVVASDRRKSNSHASLLLTTSSTHVQHADSHRGNARTPDENDQNSS
LLSNDFVLMLDCSPSPQDVFCENTPEFRTSWLWLNKLTTMHCHTLYDLRM
RNAYMSHFSVCLNQRRLTGVFEEPPPAELAWVDFTEKPEDQQCPNLTEMQ
RSCDLNQSSLAAVPSSALSCDCSGKRSTSEYWDTFSNCARPSGGTSVPSI
LKPQVQRSRRLLRPVHTTSDDEVRQLYKNQKANFRLNHSSSPSATQSSTS
RSQSSPPKFSPRSNQKPNAFQNSDSQKSPEDVRKRMIDLMELIRMELRGE
PIPDNKDILEEELKRYRNFFDLHLQDGSDFDPHSNSGRVRVLLNMQKDLI
RMLKEDLA*
BS06609.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32295-PA | 358 | CG32295-PA | 1..358 | 1..358 | 1889 | 100 | Plus |
