Clone Sequence Records
BS06610.3prime Sequence
732 bp (731 high quality bases) assembled on 2005-12-04
> BS06610.3prime
ATGGTCTAGAAAGCTTCTATTTGTTCTGTTCCGTGTCGGAGGATGCGTTC
GAAACGATCGGCGGGGTCGACCTGCCGTCGTACTGCTGCTGATTCACCAA
CCGCTGTCGCTCCAAGTACATGGAAACCTTGATGTTGCGCACCTGGTGGT
TGTCGATCAGTTTCAGAAGGGCGATGACGGCGATGCCAACGGAAATTGCG
AATGAACCCCATGCGCCAAACTGAGTGGTTCCCATTTCAATGTAAAATCC
GGAGGTGTTAATTTTTTCCGTGTCGCCGTGGATAATGTTCTGACCGGCGG
AAATGGCACAGGATGGGAATCTCTCGGTCATGGAATCGCACCAGACAATA
AAGCCCAGGGTAATGAAAATAGCCGACAAAATGGACATAGCCAGCATCCA
AATGCCCAGAACGACGTCAATGAACAGAGCTATAAACGAGGCCTCCTCCT
TCATGCGGGCGTATCTATAAATCTGCACCACCGAAATAATTAGCAGGAAG
AACCCGGTAATCAGGGGAAAGTTGCAGAAGCCATTGGAAGCCCACTGGAC
ATCGAACATGCCGTCCTCCTCCCGCCATTTGCCAGTTGTAAAGAGCAGGC
AGTGGCCACAGAATTGGTCGAGGTTTATAAACAATGGCACGACGATGCAC
AGCGACAGGATAAACAGGATGACATGGCCAGCTATCTGGCTTAGCTGCAG
CACGTTGGCCAAAGCCATGTCGACTGATAACT
BS06610.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13603-PA | 702 | CG13603-RA | 1..702 | 718..17 | 3510 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:56:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13603-RA | 1046 | CG13603-RA | 85..786 | 718..17 | 3510 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:56:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23985856..23986103 | 221..468 | 1240 | 100 | Plus |
3R | 32079331 | 3R | 23985473..23985679 | 17..223 | 1035 | 100 | Plus |
3R | 32079331 | 3R | 23986166..23986310 | 465..609 | 725 | 100 | Plus |
3R | 32079331 | 3R | 23986376..23986485 | 609..718 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 12:56:24 has no hits.
BS06610.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:34 Download gff for
BS06610.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13603-PA | 1..702 | 17..718 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:31 Download gff for
BS06610.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13603-PA | 1..702 | 17..718 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:55:22 Download gff for
BS06610.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13603-RA | 79..794 | 10..725 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:45:42 Download gff for
BS06610.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13603-RA | 79..794 | 10..725 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:45:42 Download gff for
BS06610.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23985464..23985676 | 10..220 | 98 | <- | Plus |
3R | 23985856..23986099 | 221..464 | 100 | <- | Plus |
3R | 23986166..23986309 | 465..608 | 100 | <- | Plus |
3R | 23986376..23986491 | 609..725 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:55:22 Download gff for
BS06610.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19811186..19811398 | 10..220 | 98 | <- | Plus |
arm_3R | 19811578..19811821 | 221..464 | 100 | <- | Plus |
arm_3R | 19811888..19812031 | 465..608 | 100 | <- | Plus |
arm_3R | 19812098..19812213 | 609..725 | 97 | | Plus |
BS06610.5prime Sequence
732 bp (731 high quality bases) assembled on 2005-12-04
> BS06610.5prime
GAAGTTATCAGTCGACATGGCTTTGGCCAACGTGCTGCAGCTAAGCCAGA
TAGCTGGCCATGTCATCCTGTTTATCCTGTCGCTGTGCATCGTCGTGCCA
TTGTTTATAAACCTCGACCAATTCTGTGGCCACTGCCTGCTCTTTACAAC
TGGCAAATGGCGGGAGGAGGACGGCATGTTCGATGTCCAGTGGGCTTCCA
ATGGCTTCTGCAACTTTCCCCTGATTACCGGGTTCTTCCTGCTAATTATT
TCGGTGGTGCAGATTTATAGATACGCCCGCATGAAGGAGGAGGCCTCGTT
TATAGCTCTGTTCATTGACGTCGTTCTGGGCATTTGGATGCTGGCTATGT
CCATTTTGTCGGCTATTTTCATTACCCTGGGCTTTATTGTCTGGTGCGAT
TCCATGACCGAGAGATTCCCATCCTGTGCCATTTCCGCCGGTCAGAACAT
TATCCACGGCGACACGGAAAAAATTAACACCTCCGGATTTTACATTGAAA
TGGGAACCACTCAGTTTGGCGCATGGGGTTCATTCGCAATTTCCGTTGGC
ATCGCCGTCATCGCCCTTCTGAAACTGATCGACAACCACCAGGTGCGCAA
CATCAAGGTTTCCATGTACTTGGAGCGACAGCGGTTGGTGAATCAGCAGC
AGTACGACGGCAGGTCGACCCCGCCGATCGTTTCGAACGCATCCTCCGAC
ACGGAACAGAACAAATAGAAGCTTTCTAGACC
BS06610.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13603-PA | 702 | CG13603-RA | 1..702 | 17..718 | 3510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:56:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13603-RA | 1046 | CG13603-RA | 85..786 | 17..718 | 3510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:56:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23985856..23986103 | 514..267 | 1240 | 100 | Minus |
3R | 32079331 | 3R | 23985473..23985679 | 718..512 | 1035 | 100 | Minus |
3R | 32079331 | 3R | 23986166..23986310 | 270..126 | 725 | 100 | Minus |
3R | 32079331 | 3R | 23986376..23986485 | 126..17 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:56:44 has no hits.
BS06610.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:36 Download gff for
BS06610.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13603-PA | 1..702 | 17..718 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:32 Download gff for
BS06610.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13603-PA | 1..702 | 17..718 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:05:42 Download gff for
BS06610.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13603-RA | 79..794 | 10..725 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:27:51 Download gff for
BS06610.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13603-RA | 79..794 | 10..725 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:27:51 Download gff for
BS06610.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23985464..23985676 | 515..725 | 98 | <- | Minus |
3R | 23985856..23986099 | 271..514 | 100 | <- | Minus |
3R | 23986166..23986309 | 127..270 | 100 | <- | Minus |
3R | 23986376..23986491 | 10..126 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:05:42 Download gff for
BS06610.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19811186..19811398 | 515..725 | 98 | <- | Minus |
arm_3R | 19811578..19811821 | 271..514 | 100 | <- | Minus |
arm_3R | 19811888..19812031 | 127..270 | 100 | <- | Minus |
arm_3R | 19812098..19812213 | 10..126 | 97 | | Minus |
BS06610.complete Sequence
734 bp (734 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635560
> BS06610.complete
GAAGTTATCAGTCGACATGGCTTTGGCCAACGTGCTGCAGCTAAGCCAGA
TAGCTGGCCATGTCATCCTGTTTATCCTGTCGCTGTGCATCGTCGTGCCA
TTGTTTATAAACCTCGACCAATTCTGTGGCCACTGCCTGCTCTTTACAAC
TGGCAAATGGCGGGAGGAGGACGGCATGTTCGATGTCCAGTGGGCTTCCA
ATGGCTTCTGCAACTTTCCCCTGATTACCGGGTTCTTCCTGCTAATTATT
TCGGTGGTGCAGATTTATAGATACGCCCGCATGAAGGAGGAGGCCTCGTT
TATAGCTCTGTTCATTGACGTCGTTCTGGGCATTTGGATGCTGGCTATGT
CCATTTTGTCGGCTATTTTCATTACCCTGGGCTTTATTGTCTGGTGCGAT
TCCATGACCGAGAGATTCCCATCCTGTGCCATTTCCGCCGGTCAGAACAT
TATCCACGGCGACACGGAAAAAATTAACACCTCCGGATTTTACATTGAAA
TGGGAACCACTCAGTTTGGCGCATGGGGTTCATTCGCAATTTCCGTTGGC
ATCGCCGTCATCGCCCTTCTGAAACTGATCGACAACCACCAGGTGCGCAA
CATCAAGGTTTCCATGTACTTGGAGCGACAGCGGTTGGTGAATCAGCAGC
AGTACGACGGCAGGTCGACCCCGCCGATCGTTTCGAACGCATCCTCCGAC
ACGGAACAGAACAAATAGAAGCTTTCTAGACCAT
BS06610.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:51:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13603-RA | 702 | CG13603-PA | 1..702 | 17..718 | 3510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13603-RA | 1046 | CG13603-RA | 85..786 | 17..718 | 3510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23985856..23986103 | 514..267 | 1240 | 100 | Minus |
3R | 32079331 | 3R | 23985473..23985679 | 718..512 | 1035 | 100 | Minus |
3R | 32079331 | 3R | 23986166..23986310 | 270..126 | 725 | 100 | Minus |
3R | 32079331 | 3R | 23986376..23986485 | 126..17 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:51:15 has no hits.
BS06610.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:52 Download gff for
BS06610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13603-RA | 1..702 | 17..718 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:44 Download gff for
BS06610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13603-RA | 79..794 | 10..725 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:11:24 Download gff for
BS06610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13603-RA | 85..780 | 17..712 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:53 Download gff for
BS06610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13603-RA | 79..794 | 10..725 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:57 Download gff for
BS06610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13603-RA | 85..780 | 17..712 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:57 Download gff for
BS06610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23985856..23986099 | 271..514 | 100 | <- | Minus |
3R | 23986166..23986309 | 127..270 | 100 | <- | Minus |
3R | 23986376..23986485 | 17..126 | 100 | | Minus |
3R | 23985479..23985676 | 515..712 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:11:24 Download gff for
BS06610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19811201..19811398 | 515..712 | 100 | <- | Minus |
arm_3R | 19811578..19811821 | 271..514 | 100 | <- | Minus |
arm_3R | 19811888..19812031 | 127..270 | 100 | <- | Minus |
arm_3R | 19812098..19812207 | 17..126 | 100 | | Minus |
BS06610.pep Sequence
Translation from 16 to 717
> BS06610.pep
MALANVLQLSQIAGHVILFILSLCIVVPLFINLDQFCGHCLLFTTGKWRE
EDGMFDVQWASNGFCNFPLITGFFLLIISVVQIYRYARMKEEASFIALFI
DVVLGIWMLAMSILSAIFITLGFIVWCDSMTERFPSCAISAGQNIIHGDT
EKINTSGFYIEMGTTQFGAWGSFAISVGIAVIALLKLIDNHQVRNIKVSM
YLERQRLVNQQQYDGRSTPPIVSNASSDTEQNK*
BS06610.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13603-PA | 233 | CG13603-PA | 1..233 | 1..233 | 1204 | 100 | Plus |