Clone BS06610 Report

Search the DGRC for BS06610

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:66
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCG13603-RA
Protein status:BS06610.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06610.3prime Sequence

732 bp (731 high quality bases) assembled on 2005-12-04

> BS06610.3prime
ATGGTCTAGAAAGCTTCTATTTGTTCTGTTCCGTGTCGGAGGATGCGTTC
GAAACGATCGGCGGGGTCGACCTGCCGTCGTACTGCTGCTGATTCACCAA
CCGCTGTCGCTCCAAGTACATGGAAACCTTGATGTTGCGCACCTGGTGGT
TGTCGATCAGTTTCAGAAGGGCGATGACGGCGATGCCAACGGAAATTGCG
AATGAACCCCATGCGCCAAACTGAGTGGTTCCCATTTCAATGTAAAATCC
GGAGGTGTTAATTTTTTCCGTGTCGCCGTGGATAATGTTCTGACCGGCGG
AAATGGCACAGGATGGGAATCTCTCGGTCATGGAATCGCACCAGACAATA
AAGCCCAGGGTAATGAAAATAGCCGACAAAATGGACATAGCCAGCATCCA
AATGCCCAGAACGACGTCAATGAACAGAGCTATAAACGAGGCCTCCTCCT
TCATGCGGGCGTATCTATAAATCTGCACCACCGAAATAATTAGCAGGAAG
AACCCGGTAATCAGGGGAAAGTTGCAGAAGCCATTGGAAGCCCACTGGAC
ATCGAACATGCCGTCCTCCTCCCGCCATTTGCCAGTTGTAAAGAGCAGGC
AGTGGCCACAGAATTGGTCGAGGTTTATAAACAATGGCACGACGATGCAC
AGCGACAGGATAAACAGGATGACATGGCCAGCTATCTGGCTTAGCTGCAG
CACGTTGGCCAAAGCCATGTCGACTGATAACT

BS06610.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG13603-PA 702 CG13603-RA 1..702 718..17 3510 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:56:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG13603-RA 1046 CG13603-RA 85..786 718..17 3510 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:56:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23985856..23986103 221..468 1240 100 Plus
3R 32079331 3R 23985473..23985679 17..223 1035 100 Plus
3R 32079331 3R 23986166..23986310 465..609 725 100 Plus
3R 32079331 3R 23986376..23986485 609..718 550 100 Plus
Blast to na_te.dros performed on 2015-02-03 12:56:24 has no hits.

BS06610.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:34 Download gff for BS06610.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13603-PA 1..702 17..718 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:31 Download gff for BS06610.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13603-PA 1..702 17..718 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:55:22 Download gff for BS06610.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13603-RA 79..794 10..725 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:45:42 Download gff for BS06610.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13603-RA 79..794 10..725 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:45:42 Download gff for BS06610.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23985464..23985676 10..220 98 <- Plus
3R 23985856..23986099 221..464 100 <- Plus
3R 23986166..23986309 465..608 100 <- Plus
3R 23986376..23986491 609..725 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:55:22 Download gff for BS06610.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19811186..19811398 10..220 98 <- Plus
arm_3R 19811578..19811821 221..464 100 <- Plus
arm_3R 19811888..19812031 465..608 100 <- Plus
arm_3R 19812098..19812213 609..725 97   Plus

BS06610.5prime Sequence

732 bp (731 high quality bases) assembled on 2005-12-04

> BS06610.5prime
GAAGTTATCAGTCGACATGGCTTTGGCCAACGTGCTGCAGCTAAGCCAGA
TAGCTGGCCATGTCATCCTGTTTATCCTGTCGCTGTGCATCGTCGTGCCA
TTGTTTATAAACCTCGACCAATTCTGTGGCCACTGCCTGCTCTTTACAAC
TGGCAAATGGCGGGAGGAGGACGGCATGTTCGATGTCCAGTGGGCTTCCA
ATGGCTTCTGCAACTTTCCCCTGATTACCGGGTTCTTCCTGCTAATTATT
TCGGTGGTGCAGATTTATAGATACGCCCGCATGAAGGAGGAGGCCTCGTT
TATAGCTCTGTTCATTGACGTCGTTCTGGGCATTTGGATGCTGGCTATGT
CCATTTTGTCGGCTATTTTCATTACCCTGGGCTTTATTGTCTGGTGCGAT
TCCATGACCGAGAGATTCCCATCCTGTGCCATTTCCGCCGGTCAGAACAT
TATCCACGGCGACACGGAAAAAATTAACACCTCCGGATTTTACATTGAAA
TGGGAACCACTCAGTTTGGCGCATGGGGTTCATTCGCAATTTCCGTTGGC
ATCGCCGTCATCGCCCTTCTGAAACTGATCGACAACCACCAGGTGCGCAA
CATCAAGGTTTCCATGTACTTGGAGCGACAGCGGTTGGTGAATCAGCAGC
AGTACGACGGCAGGTCGACCCCGCCGATCGTTTCGAACGCATCCTCCGAC
ACGGAACAGAACAAATAGAAGCTTTCTAGACC

BS06610.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG13603-PA 702 CG13603-RA 1..702 17..718 3510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:56:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG13603-RA 1046 CG13603-RA 85..786 17..718 3510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23985856..23986103 514..267 1240 100 Minus
3R 32079331 3R 23985473..23985679 718..512 1035 100 Minus
3R 32079331 3R 23986166..23986310 270..126 725 100 Minus
3R 32079331 3R 23986376..23986485 126..17 550 100 Minus
Blast to na_te.dros performed on 2015-02-12 12:56:44 has no hits.

BS06610.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:36 Download gff for BS06610.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13603-PA 1..702 17..718 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:32 Download gff for BS06610.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13603-PA 1..702 17..718 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:05:42 Download gff for BS06610.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13603-RA 79..794 10..725 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:27:51 Download gff for BS06610.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13603-RA 79..794 10..725 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:27:51 Download gff for BS06610.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23985464..23985676 515..725 98 <- Minus
3R 23985856..23986099 271..514 100 <- Minus
3R 23986166..23986309 127..270 100 <- Minus
3R 23986376..23986491 10..126 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:05:42 Download gff for BS06610.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19811186..19811398 515..725 98 <- Minus
arm_3R 19811578..19811821 271..514 100 <- Minus
arm_3R 19811888..19812031 127..270 100 <- Minus
arm_3R 19812098..19812213 10..126 97   Minus

BS06610.complete Sequence

734 bp (734 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635560

> BS06610.complete
GAAGTTATCAGTCGACATGGCTTTGGCCAACGTGCTGCAGCTAAGCCAGA
TAGCTGGCCATGTCATCCTGTTTATCCTGTCGCTGTGCATCGTCGTGCCA
TTGTTTATAAACCTCGACCAATTCTGTGGCCACTGCCTGCTCTTTACAAC
TGGCAAATGGCGGGAGGAGGACGGCATGTTCGATGTCCAGTGGGCTTCCA
ATGGCTTCTGCAACTTTCCCCTGATTACCGGGTTCTTCCTGCTAATTATT
TCGGTGGTGCAGATTTATAGATACGCCCGCATGAAGGAGGAGGCCTCGTT
TATAGCTCTGTTCATTGACGTCGTTCTGGGCATTTGGATGCTGGCTATGT
CCATTTTGTCGGCTATTTTCATTACCCTGGGCTTTATTGTCTGGTGCGAT
TCCATGACCGAGAGATTCCCATCCTGTGCCATTTCCGCCGGTCAGAACAT
TATCCACGGCGACACGGAAAAAATTAACACCTCCGGATTTTACATTGAAA
TGGGAACCACTCAGTTTGGCGCATGGGGTTCATTCGCAATTTCCGTTGGC
ATCGCCGTCATCGCCCTTCTGAAACTGATCGACAACCACCAGGTGCGCAA
CATCAAGGTTTCCATGTACTTGGAGCGACAGCGGTTGGTGAATCAGCAGC
AGTACGACGGCAGGTCGACCCCGCCGATCGTTTCGAACGCATCCTCCGAC
ACGGAACAGAACAAATAGAAGCTTTCTAGACCAT

BS06610.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:51:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG13603-RA 702 CG13603-PA 1..702 17..718 3510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG13603-RA 1046 CG13603-RA 85..786 17..718 3510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23985856..23986103 514..267 1240 100 Minus
3R 32079331 3R 23985473..23985679 718..512 1035 100 Minus
3R 32079331 3R 23986166..23986310 270..126 725 100 Minus
3R 32079331 3R 23986376..23986485 126..17 550 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:51:15 has no hits.

BS06610.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:52 Download gff for BS06610.complete
Subject Subject Range Query Range Percent Splice Strand
CG13603-RA 1..702 17..718 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:44 Download gff for BS06610.complete
Subject Subject Range Query Range Percent Splice Strand
CG13603-RA 79..794 10..725 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:11:24 Download gff for BS06610.complete
Subject Subject Range Query Range Percent Splice Strand
CG13603-RA 85..780 17..712 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:53 Download gff for BS06610.complete
Subject Subject Range Query Range Percent Splice Strand
CG13603-RA 79..794 10..725 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:57 Download gff for BS06610.complete
Subject Subject Range Query Range Percent Splice Strand
CG13603-RA 85..780 17..712 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:57 Download gff for BS06610.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23985856..23986099 271..514 100 <- Minus
3R 23986166..23986309 127..270 100 <- Minus
3R 23986376..23986485 17..126 100   Minus
3R 23985479..23985676 515..712 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:11:24 Download gff for BS06610.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19811201..19811398 515..712 100 <- Minus
arm_3R 19811578..19811821 271..514 100 <- Minus
arm_3R 19811888..19812031 127..270 100 <- Minus
arm_3R 19812098..19812207 17..126 100   Minus

BS06610.pep Sequence

Translation from 16 to 717

> BS06610.pep
MALANVLQLSQIAGHVILFILSLCIVVPLFINLDQFCGHCLLFTTGKWRE
EDGMFDVQWASNGFCNFPLITGFFLLIISVVQIYRYARMKEEASFIALFI
DVVLGIWMLAMSILSAIFITLGFIVWCDSMTERFPSCAISAGQNIIHGDT
EKINTSGFYIEMGTTQFGAWGSFAISVGIAVIALLKLIDNHQVRNIKVSM
YLERQRLVNQQQYDGRSTPPIVSNASSDTEQNK*

BS06610.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG13603-PA 233 CG13603-PA 1..233 1..233 1204 100 Plus