Clone Sequence Records
BS06611.3prime Sequence
846 bp (845 high quality bases) assembled on 2005-12-04
> BS06611.3prime
ATGGTCTAGAAAGCTTCTAAAAGGTGCCGAATTCATAGCAGGGTTCGGCG
GCGTTGTCAGACCGGGATTGAAGCTCTGTGTCGTCATCGGTCCCGTTGAG
GGTGTGTGGCATGGATAGAATGCTCACGGATAGTTTGGCCATTTGATGGA
GTAGCACATCAATACGTTCATTCTTGAGGGCAATTGTGTTCTCCAGGTGA
TTGGCCCTCTCGGCAATGGAATTGATGTAGCGTGACTTCTCGGCACTCTC
CCTAATAGCATTGGCATAGTGTTCGTACTCGACCACTTTCTTGGATACCT
TCTTCATCTGTCCATTGACCACAACATTCACGTCCATGGTCAGCACCTGG
GGTTGACTATCGATCGAGCAGGAGCGCTCAATCACTTGGGTGAGGGATCG
GTTGAGAGTGCGTACCACAGAATTCTTGTTAGCCAACTTTTTAATCACCA
CGCTCTTTTGGGAGCTCGTTGGCGATACACTCAGACGGGGTCTTGGTCTG
GGACTAGCGCACTTGGTCACCGCGATTAGTTCATGGAACAGTGATTCTAT
GGCTCCTGGCGCTGCTGACGCCAGCTGCTCCAGCTCCGAACGTGTCAAAT
TGATGCCCAATTTCTTCAGTACCTTCTGATTGAAGGTCTGCCAGCTCTGG
AGTTTCAGGGCCACGCTGCTCTTGGGCGTATAGTTGTGCAGATCCACCAG
ACGAGGATGACTGCGCTTGACAATCTTTGCCACCGGCAAGACATCGGAGA
ATGAACGACGAGCTTTCAGATCCAGGATAATGCGCTGCTCCTTTAGCCAC
TGGTTCAGGTCATTCTGCTGTTCGTTCTCCATGTCGACTGATAACT
BS06611.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16719-PA | 816 | CG16719-RA | 1..816 | 832..17 | 4080 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:39:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16719-RA | 1080 | CG16719-RA | 85..900 | 832..17 | 4080 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:39:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9685255..9686070 | 832..17 | 4080 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:39:56 has no hits.
BS06611.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:37 Download gff for
BS06611.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16719-PA | 1..816 | 17..832 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:33 Download gff for
BS06611.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16719-PA | 1..816 | 17..832 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:14:38 Download gff for
BS06611.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16719-RA | 82..900 | 17..839 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:33 Download gff for
BS06611.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16719-RA | 82..900 | 17..839 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:33 Download gff for
BS06611.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9685252..9686070 | 17..839 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:14:38 Download gff for
BS06611.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9678352..9679170 | 17..839 | 99 | | Minus |
BS06611.5prime Sequence
846 bp (814 high quality bases) assembled on 2005-12-04
> BS06611.5prime
GAAGTTATCAGTCGACATGGAGAACGAACAGCAGAATGACCTGAACCAGT
GGCTAAAGGAGCAGCGCATTATCCTGGATCTGAAAGCTCGTCGTTCATTC
TCCGATGTCTTGCCGGTGGCAAAGATTGTCAAGCGCAGTCATCCTCGTCT
GGTGGATCTGCACAACTATACGCCCAAGAGCAGCGTGGCCCTGAAACTCC
AGAGCTGGCAGACCTTCAATCAGAAGGTACTGAAGAAATTGGGCATCAAT
TTGACACGTTCGGAGCTGGAGCAGCTGGCGTCAGCAGCGCCAGGAGCCAT
AGAATCACTGTTCCATGAACTAATCGCGGTGACCAAGTGCGCTAGTCCCA
GACCAAGACCCCGTCTGAGTGTATCGCCAACGAGCTCCCAAAAGAGCGTG
GTGATTAAAAAGTTGGCTAACAAGAATTCTGTGGTACGCACTCTCAACCG
ATCCCTCACCCAAGTGATTGAGCGCTCCTGCTCGATCGATAGTCAACCCC
AGGTGCTGACCATGGACGTGAATGTTGTGGTCAATGGACAGATGAAGAAG
GTATCCAAGAAAGTGGTCGAGTACGAACACTATGCCAATGCTATTAGGGA
GAGTGCCGAGAAGTCACGCTACATCAATTCCATTGCCGAGAGGGCCAATC
ACCTGGAGAACACAATTGCCCTCAAGAATGAACGTATTGATGTGCTACTC
CATCAAATGGCCAAACTATCCGTGAGCATTCTATCCATGCCACACACCCT
CAACGGGACCGATGACGACACAGAGCTTCAATCCCGGTCTGACAACGCCG
CCGAACCCTGCTATGAATTCGGCACCTTTTAGAAGCTTTCTAGACC
BS06611.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16719-PA | 816 | CG16719-RA | 1..816 | 17..832 | 4080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:53:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16719-RA | 1080 | CG16719-RA | 85..900 | 17..832 | 4080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:52:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9685255..9686070 | 17..832 | 4080 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:52:58 has no hits.
BS06611.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:38 Download gff for
BS06611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16719-PA | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:34 Download gff for
BS06611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16719-PA | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:16:45 Download gff for
BS06611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16719-RA | 82..900 | 10..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:46:36 Download gff for
BS06611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16719-RA | 82..900 | 10..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:46:36 Download gff for
BS06611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9685252..9686070 | 10..832 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:16:45 Download gff for
BS06611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9678352..9679170 | 10..832 | 99 | | Plus |
BS06611.complete Sequence
848 bp (848 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635561
> BS06611.complete
GAAGTTATCAGTCGACATGGAGAACGAACAGCAGAATGACCTGAACCAGT
GGCTAAAGGAGCAGCGCATTATCCTGGATCTGAAAGCTCGTCGTTCATTC
TCCGATGTCTTGCCGGTGGCAAAGATTGTCAAGCGCAGTCATCCTCGTCT
GGTGGATCTGCACAACTATACGCCCAAGAGCAGCGTGGCCCTGAAACTCC
AGAGCTGGCAGACCTTCAATCAGAAGGTACTGAAGAAATTGGGCATCAAT
TTGACACGTTCGGAGCTGGAGCAGCTGGCGTCAGCAGCGCCAGGAGCCAT
AGAATCACTGTTCCATGAACTAATCGCGGTGACCAAGTGCGCTAGTCCCA
GACCAAGACCCCGTCTGAGTGTATCGCCAACGAGCTCCCAAAAGAGCGTG
GTGATTAAAAAGTTGGCTAACAAGAATTCTGTGGTACGCACTCTCAACCG
ATCCCTCACCCAAGTGATTGAGCGCTCCTGCTCGATCGATAGTCAACCCC
AGGTGCTGACCATGGACGTGAATGTTGTGGTCAATGGACAGATGAAGAAG
GTATCCAAGAAAGTGGTCGAGTACGAACACTATGCCAATGCTATTAGGGA
GAGTGCCGAGAAGTCACGCTACATCAATTCCATTGCCGAGAGGGCCAATC
ACCTGGAGAACACAATTGCCCTCAAGAATGAACGTATTGATGTGCTACTC
CATCAAATGGCCAAACTATCCGTGAGCATTCTATCCATGCCACACACCCT
CAACGGGACCGATGACGACACAGAGCTTCAATCCCGGTCTGACAACGCCG
CCGAACCCTGCTATGAATTCGGCACCTTTTAGAAGCTTTCTAGACCAT
BS06611.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:50:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16719-RA | 816 | CG16719-PA | 1..816 | 17..832 | 4080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:50:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16719-RA | 1080 | CG16719-RA | 85..900 | 17..832 | 4080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:50:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9685255..9686070 | 17..832 | 4080 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:50:45 has no hits.
BS06611.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:28 Download gff for
BS06611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16719-RA | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:22 Download gff for
BS06611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16719-RA | 82..900 | 10..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:39:40 Download gff for
BS06611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16719-RA | 85..900 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:28 Download gff for
BS06611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16719-RA | 82..900 | 10..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:31 Download gff for
BS06611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16719-RA | 85..900 | 17..832 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:31 Download gff for
BS06611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9685255..9686070 | 17..832 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:39:40 Download gff for
BS06611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9678355..9679170 | 17..832 | 100 | | Plus |
BS06611.pep Sequence
Translation from 16 to 831
> BS06611.pep
MENEQQNDLNQWLKEQRIILDLKARRSFSDVLPVAKIVKRSHPRLVDLHN
YTPKSSVALKLQSWQTFNQKVLKKLGINLTRSELEQLASAAPGAIESLFH
ELIAVTKCASPRPRPRLSVSPTSSQKSVVIKKLANKNSVVRTLNRSLTQV
IERSCSIDSQPQVLTMDVNVVVNGQMKKVSKKVVEYEHYANAIRESAEKS
RYINSIAERANHLENTIALKNERIDVLLHQMAKLSVSILSMPHTLNGTDD
DTELQSRSDNAAEPCYEFGTF*
BS06611.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16719-PA | 271 | CG16719-PA | 1..271 | 1..271 | 1356 | 100 | Plus |
| CG12395-PA | 254 | CG12395-PA | 9..208 | 1..233 | 338 | 36.5 | Plus |
