Clone Sequence Records
BS06612.3prime Sequence
804 bp (803 high quality bases) assembled on 2005-12-04
> BS06612.3prime
ATGGTCTAGAAAGCTTCTAAGCGCCCAGCTGCTTGTAGAGGATGGGCACA
TAGTCGTCGTACTCAGCCTGGTAGAGGTTACCGGCAATGGGATTGCCGAG
GGCGTACTTCTTGGCGAACTCGGCGATTTTGAAGCCACCGCGTCCATCTC
CGCTGTTATTGGGCAGTCGCTTCTCGTCGAATGTGAGCTTGCACCGCTGC
TCGTAGATCAGGAAAACGTAACGATGGAGTCCGGTGTCTGGTGGAGGCCC
GGATCCCACGTAGGCGGAGAGAACCTCGCCCTTGGCGACATCTCCACCGG
GTATGTTGCCCACCAGCCAATGGTGCCACTCCCTAAACTTGGGATCCTTG
CGACTGGGCGCATCCGGATCGGTCATGCAGAGGGTGTACAGCTTATTGGC
GTCCGCCTCCCATTTCACGCACGGCTCATCCTTCACCTGGGTGGGGGTCA
GGACCTGACCCGGCTTCACGACAATATCGCCGGGATATTCCACCACAGCT
GTCTGCGCCGGTGCCTTGGCGATCACATCCGGAACTACGCAGTGCTCCTC
CATTGTTTTGCCTACTTTTTCGCAAGAATACTGCCGCTGAGATGCGATAA
ATGCAAAGATTGGTTTCGGTTCCTTGGTTAGGATAGAATTGCTAAAAGTT
TTCAGCGTTCTAATGGCGGCCGGAAAGTTGACAGCTGAATAATTGACATT
CACACCGGTTGATCGGATGTAATCTTTTCTAAATCCATTTAAAGCGCTGC
GATTGAGATTACGCAACACCCGGAGCCGCATACAAATCATGTCGACTGAT
AACT
BS06612.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6180-PA | 774 | CG6180-RA | 1..774 | 790..17 | 3870 | 100 | Minus |
CG10298-PA | 564 | CG10298-RA | 200..239 | 375..336 | 175 | 97.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:46:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6180-RA | 1020 | CG6180-RA | 111..884 | 790..17 | 3870 | 100 | Minus |
CG10298-RA | 745 | CG10298-RA | 255..438 | 388..205 | 275 | 77.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:46:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12707771..12708544 | 790..17 | 3870 | 100 | Minus |
3R | 32079331 | 3R | 6343309..6343492 | 388..205 | 275 | 76.6 | Minus |
Blast to na_te.dros performed on 2015-01-31 16:46:55 has no hits.
BS06612.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:39 Download gff for
BS06612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6180-PA | 1..774 | 17..790 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:35 Download gff for
BS06612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6180-PA | 1..774 | 17..790 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:27:15 Download gff for
BS06612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6180-RA | 108..890 | 7..797 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:44:54 Download gff for
BS06612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6180-RA | 108..890 | 7..797 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:44:54 Download gff for
BS06612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12707768..12708550 | 7..797 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:27:15 Download gff for
BS06612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12707768..12708550 | 7..797 | 98 | | Minus |
BS06612.5prime Sequence
804 bp (787 high quality bases) assembled on 2005-12-04
> BS06612.5prime
GAAGTTATCAGTCGACATGATTTGTATGCGGCTCCGGGTGTTGCGTAATC
TCAATCGCAGCGCTTTAAATGGATTTAGAAAAGATTACATCCGATCAACC
GGTGTGAATGTCAATTATTCAGCTGTCAACTTTCCGGCCGCCATTAGAAC
GCTGAAAACTTTTAGCAATTCTATCCTAACCAAGGAACCGAAACCAATCT
TTGCATTTATCGCATCTCAGCGGCAGTATTCTTGCGAAAAAGTAGGCAAA
ACAATGGAGGAGCACTGCGTAGTTCCGGATGTGATCGCCAAGGCACCGGC
GCAGACAGCTGTGGTGGAATATCCCGGCGATATTGTCGTGAAGCCGGGTC
AGGTCCTGACCCCCACCCAGGTGAAGGATGAGCCGTGCGTGAAATGGGAG
GCGGACGCCAATAAGCTGTACACCCTCTGCATGACCGATCCGGATGCGCC
CAGTCGCAAGGATCCCAAGTTTAGGGAGTGGCACCATTGGCTGGTGGGCA
ACATACCCGGTGGAGATGTCGCCAAGGGCGAGGTTCTCTCCGCCTACGTG
GGATCCGGGCCTCCACCAGACACCGGACTCCATCGTTACGTTTTCCTGAT
CTACGAGCAGCGGTGCAAGCTCACATTCGACGAGAAGCGACTGCCCAATA
ACAGCGGAGATGGACGCGGTGGCTTCAAAATCGCCGAGTTCGCCAAGAAG
TACGCCCTCGGCAATCCCATTGCCGGTAACCTCTACCAGGCTGAGTACGA
CGACTATGTGCCCATCCTCTACAAGCAGCTGGGCGCTTAGAAGCTTTCTA
GACC
BS06612.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6180-PA | 774 | CG6180-RA | 1..774 | 17..790 | 3870 | 100 | Plus |
CG10298-PA | 564 | CG10298-RA | 200..239 | 432..471 | 175 | 97.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:36:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6180-RA | 1020 | CG6180-RA | 111..884 | 17..790 | 3870 | 100 | Plus |
CG10298-RA | 745 | CG10298-RA | 255..438 | 419..602 | 275 | 77.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:35:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12707771..12708544 | 17..790 | 3870 | 100 | Plus |
3R | 32079331 | 3R | 6343309..6343492 | 419..602 | 275 | 76.6 | Plus |
Blast to na_te.dros performed on 2015-02-04 02:35:58 has no hits.
BS06612.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:40 Download gff for
BS06612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6180-PA | 1..774 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:37 Download gff for
BS06612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6180-PA | 1..774 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:52:06 Download gff for
BS06612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6180-RA | 108..890 | 10..800 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:37:50 Download gff for
BS06612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6180-RA | 108..890 | 10..800 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:37:50 Download gff for
BS06612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12707768..12708550 | 10..800 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:52:06 Download gff for
BS06612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12707768..12708550 | 10..800 | 98 | | Plus |
BS06612.complete Sequence
806 bp (806 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635562
> BS06612.complete
GAAGTTATCAGTCGACATGATTTGTATGCGGCTCCGGGTGTTGCGTAATC
TCAATCGCAGCGCTTTAAATGGATTTAGAAAAGATTACATCCGATCAACC
GGTGTGAATGTCAATTATTCAGCTGTCAACTTTCCGGCCGCCATTAGAAC
GCTGAAAACTTTTAGCAATTCTATCCTAACCAAGGAACCGAAACCAATCT
TTGCATTTATCGCATCTCAGCGGCAGTATTCTTGCGAAAAAGTAGGCAAA
ACAATGGAGGAGCACTGCGTAGTTCCGGATGTGATCGCCAAGGCACCGGC
GCAGACAGCTGTGGTGGAATATCCCGGCGATATTGTCGTGAAGCCGGGTC
AGGTCCTGACCCCCACCCAGGTGAAGGATGAGCCGTGCGTGAAATGGGAG
GCGGACGCCAATAAGCTGTACACCCTCTGCATGACCGATCCGGATGCGCC
CAGTCGCAAGGATCCCAAGTTTAGGGAGTGGCACCATTGGCTGGTGGGCA
ACATACCCGGTGGAGATGTCGCCAAGGGCGAGGTTCTCTCCGCCTACGTG
GGATCCGGGCCTCCACCAGACACCGGACTCCATCGTTACGTTTTCCTGAT
CTACGAGCAGCGGTGCAAGCTCACATTCGACGAGAAGCGACTGCCCAATA
ACAGCGGAGATGGACGCGGTGGCTTCAAAATCGCCGAGTTCGCCAAGAAG
TACGCCCTCGGCAATCCCATTGCCGGTAACCTCTACCAGGCTGAGTACGA
CGACTATGTGCCCATCCTCTACAAGCAGCTGGGCGCTTAGAAGCTTTCTA
GACCAT
BS06612.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:01:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6180-RA | 774 | CG6180-PA | 1..774 | 17..790 | 3870 | 100 | Plus |
CG10298-RA | 564 | CG10298-PA | 187..370 | 419..602 | 275 | 76.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6180-RA | 1020 | CG6180-RA | 111..884 | 17..790 | 3870 | 100 | Plus |
CG10298-RA | 745 | CG10298-RA | 255..438 | 419..602 | 275 | 76.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12707771..12708544 | 17..790 | 3870 | 100 | Plus |
3R | 32079331 | 3R | 6343309..6343492 | 419..602 | 275 | 76.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:01:33 has no hits.
BS06612.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:30 Download gff for
BS06612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6180-RA | 1..774 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:24 Download gff for
BS06612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6180-RA | 108..890 | 10..800 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:07:23 Download gff for
BS06612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6180-RA | 111..884 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:30 Download gff for
BS06612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6180-RA | 108..890 | 10..800 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:09:32 Download gff for
BS06612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6180-RA | 111..884 | 17..790 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:09:32 Download gff for
BS06612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12707771..12708544 | 17..790 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:07:23 Download gff for
BS06612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12707771..12708544 | 17..790 | 100 | | Plus |
BS06612.pep Sequence
Translation from 16 to 789
> BS06612.pep
MICMRLRVLRNLNRSALNGFRKDYIRSTGVNVNYSAVNFPAAIRTLKTFS
NSILTKEPKPIFAFIASQRQYSCEKVGKTMEEHCVVPDVIAKAPAQTAVV
EYPGDIVVKPGQVLTPTQVKDEPCVKWEADANKLYTLCMTDPDAPSRKDP
KFREWHHWLVGNIPGGDVAKGEVLSAYVGSGPPPDTGLHRYVFLIYEQRC
KLTFDEKRLPNNSGDGRGGFKIAEFAKKYALGNPIAGNLYQAEYDDYVPI
LYKQLGA*
BS06612.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6180-PA | 257 | CG6180-PA | 1..257 | 1..257 | 1374 | 100 | Plus |
CG10298-PA | 187 | CG10298-PA | 10..183 | 82..255 | 572 | 59.8 | Plus |
CG17919-PA | 202 | CG17919-PA | 20..199 | 76..255 | 544 | 56.7 | Plus |
Pebp1-PA | 176 | CG18594-PA | 1..171 | 80..251 | 469 | 50 | Plus |
a5-PA | 210 | CG5430-PA | 17..205 | 67..255 | 453 | 40.7 | Plus |