Clone BS06612 Report

Search the DGRC for BS06612

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:66
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptCG6180-RA
Protein status:BS06612.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06612.3prime Sequence

804 bp (803 high quality bases) assembled on 2005-12-04

> BS06612.3prime
ATGGTCTAGAAAGCTTCTAAGCGCCCAGCTGCTTGTAGAGGATGGGCACA
TAGTCGTCGTACTCAGCCTGGTAGAGGTTACCGGCAATGGGATTGCCGAG
GGCGTACTTCTTGGCGAACTCGGCGATTTTGAAGCCACCGCGTCCATCTC
CGCTGTTATTGGGCAGTCGCTTCTCGTCGAATGTGAGCTTGCACCGCTGC
TCGTAGATCAGGAAAACGTAACGATGGAGTCCGGTGTCTGGTGGAGGCCC
GGATCCCACGTAGGCGGAGAGAACCTCGCCCTTGGCGACATCTCCACCGG
GTATGTTGCCCACCAGCCAATGGTGCCACTCCCTAAACTTGGGATCCTTG
CGACTGGGCGCATCCGGATCGGTCATGCAGAGGGTGTACAGCTTATTGGC
GTCCGCCTCCCATTTCACGCACGGCTCATCCTTCACCTGGGTGGGGGTCA
GGACCTGACCCGGCTTCACGACAATATCGCCGGGATATTCCACCACAGCT
GTCTGCGCCGGTGCCTTGGCGATCACATCCGGAACTACGCAGTGCTCCTC
CATTGTTTTGCCTACTTTTTCGCAAGAATACTGCCGCTGAGATGCGATAA
ATGCAAAGATTGGTTTCGGTTCCTTGGTTAGGATAGAATTGCTAAAAGTT
TTCAGCGTTCTAATGGCGGCCGGAAAGTTGACAGCTGAATAATTGACATT
CACACCGGTTGATCGGATGTAATCTTTTCTAAATCCATTTAAAGCGCTGC
GATTGAGATTACGCAACACCCGGAGCCGCATACAAATCATGTCGACTGAT
AACT

BS06612.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG6180-PA 774 CG6180-RA 1..774 790..17 3870 100 Minus
CG10298-PA 564 CG10298-RA 200..239 375..336 175 97.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG6180-RA 1020 CG6180-RA 111..884 790..17 3870 100 Minus
CG10298-RA 745 CG10298-RA 255..438 388..205 275 77.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:46:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12707771..12708544 790..17 3870 100 Minus
3R 32079331 3R 6343309..6343492 388..205 275 76.6 Minus
Blast to na_te.dros performed on 2015-01-31 16:46:55 has no hits.

BS06612.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:39 Download gff for BS06612.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6180-PA 1..774 17..790 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:35 Download gff for BS06612.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6180-PA 1..774 17..790 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:27:15 Download gff for BS06612.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6180-RA 108..890 7..797 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:44:54 Download gff for BS06612.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6180-RA 108..890 7..797 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:44:54 Download gff for BS06612.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 12707768..12708550 7..797 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:27:15 Download gff for BS06612.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12707768..12708550 7..797 98   Minus

BS06612.5prime Sequence

804 bp (787 high quality bases) assembled on 2005-12-04

> BS06612.5prime
GAAGTTATCAGTCGACATGATTTGTATGCGGCTCCGGGTGTTGCGTAATC
TCAATCGCAGCGCTTTAAATGGATTTAGAAAAGATTACATCCGATCAACC
GGTGTGAATGTCAATTATTCAGCTGTCAACTTTCCGGCCGCCATTAGAAC
GCTGAAAACTTTTAGCAATTCTATCCTAACCAAGGAACCGAAACCAATCT
TTGCATTTATCGCATCTCAGCGGCAGTATTCTTGCGAAAAAGTAGGCAAA
ACAATGGAGGAGCACTGCGTAGTTCCGGATGTGATCGCCAAGGCACCGGC
GCAGACAGCTGTGGTGGAATATCCCGGCGATATTGTCGTGAAGCCGGGTC
AGGTCCTGACCCCCACCCAGGTGAAGGATGAGCCGTGCGTGAAATGGGAG
GCGGACGCCAATAAGCTGTACACCCTCTGCATGACCGATCCGGATGCGCC
CAGTCGCAAGGATCCCAAGTTTAGGGAGTGGCACCATTGGCTGGTGGGCA
ACATACCCGGTGGAGATGTCGCCAAGGGCGAGGTTCTCTCCGCCTACGTG
GGATCCGGGCCTCCACCAGACACCGGACTCCATCGTTACGTTTTCCTGAT
CTACGAGCAGCGGTGCAAGCTCACATTCGACGAGAAGCGACTGCCCAATA
ACAGCGGAGATGGACGCGGTGGCTTCAAAATCGCCGAGTTCGCCAAGAAG
TACGCCCTCGGCAATCCCATTGCCGGTAACCTCTACCAGGCTGAGTACGA
CGACTATGTGCCCATCCTCTACAAGCAGCTGGGCGCTTAGAAGCTTTCTA
GACC

BS06612.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG6180-PA 774 CG6180-RA 1..774 17..790 3870 100 Plus
CG10298-PA 564 CG10298-RA 200..239 432..471 175 97.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:36:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG6180-RA 1020 CG6180-RA 111..884 17..790 3870 100 Plus
CG10298-RA 745 CG10298-RA 255..438 419..602 275 77.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12707771..12708544 17..790 3870 100 Plus
3R 32079331 3R 6343309..6343492 419..602 275 76.6 Plus
Blast to na_te.dros performed on 2015-02-04 02:35:58 has no hits.

BS06612.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:40 Download gff for BS06612.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6180-PA 1..774 17..790 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:37 Download gff for BS06612.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6180-PA 1..774 17..790 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:52:06 Download gff for BS06612.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6180-RA 108..890 10..800 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:37:50 Download gff for BS06612.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6180-RA 108..890 10..800 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:37:50 Download gff for BS06612.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12707768..12708550 10..800 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:52:06 Download gff for BS06612.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12707768..12708550 10..800 98   Plus

BS06612.complete Sequence

806 bp (806 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635562

> BS06612.complete
GAAGTTATCAGTCGACATGATTTGTATGCGGCTCCGGGTGTTGCGTAATC
TCAATCGCAGCGCTTTAAATGGATTTAGAAAAGATTACATCCGATCAACC
GGTGTGAATGTCAATTATTCAGCTGTCAACTTTCCGGCCGCCATTAGAAC
GCTGAAAACTTTTAGCAATTCTATCCTAACCAAGGAACCGAAACCAATCT
TTGCATTTATCGCATCTCAGCGGCAGTATTCTTGCGAAAAAGTAGGCAAA
ACAATGGAGGAGCACTGCGTAGTTCCGGATGTGATCGCCAAGGCACCGGC
GCAGACAGCTGTGGTGGAATATCCCGGCGATATTGTCGTGAAGCCGGGTC
AGGTCCTGACCCCCACCCAGGTGAAGGATGAGCCGTGCGTGAAATGGGAG
GCGGACGCCAATAAGCTGTACACCCTCTGCATGACCGATCCGGATGCGCC
CAGTCGCAAGGATCCCAAGTTTAGGGAGTGGCACCATTGGCTGGTGGGCA
ACATACCCGGTGGAGATGTCGCCAAGGGCGAGGTTCTCTCCGCCTACGTG
GGATCCGGGCCTCCACCAGACACCGGACTCCATCGTTACGTTTTCCTGAT
CTACGAGCAGCGGTGCAAGCTCACATTCGACGAGAAGCGACTGCCCAATA
ACAGCGGAGATGGACGCGGTGGCTTCAAAATCGCCGAGTTCGCCAAGAAG
TACGCCCTCGGCAATCCCATTGCCGGTAACCTCTACCAGGCTGAGTACGA
CGACTATGTGCCCATCCTCTACAAGCAGCTGGGCGCTTAGAAGCTTTCTA
GACCAT

BS06612.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:01:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6180-RA 774 CG6180-PA 1..774 17..790 3870 100 Plus
CG10298-RA 564 CG10298-PA 187..370 419..602 275 76.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG6180-RA 1020 CG6180-RA 111..884 17..790 3870 100 Plus
CG10298-RA 745 CG10298-RA 255..438 419..602 275 76.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12707771..12708544 17..790 3870 100 Plus
3R 32079331 3R 6343309..6343492 419..602 275 76.6 Plus
Blast to na_te.dros performed on 2014-11-27 08:01:33 has no hits.

BS06612.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:30 Download gff for BS06612.complete
Subject Subject Range Query Range Percent Splice Strand
CG6180-RA 1..774 17..790 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:24 Download gff for BS06612.complete
Subject Subject Range Query Range Percent Splice Strand
CG6180-RA 108..890 10..800 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:07:23 Download gff for BS06612.complete
Subject Subject Range Query Range Percent Splice Strand
CG6180-RA 111..884 17..790 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:30 Download gff for BS06612.complete
Subject Subject Range Query Range Percent Splice Strand
CG6180-RA 108..890 10..800 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:09:32 Download gff for BS06612.complete
Subject Subject Range Query Range Percent Splice Strand
CG6180-RA 111..884 17..790 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:09:32 Download gff for BS06612.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12707771..12708544 17..790 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:07:23 Download gff for BS06612.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12707771..12708544 17..790 100   Plus

BS06612.pep Sequence

Translation from 16 to 789

> BS06612.pep
MICMRLRVLRNLNRSALNGFRKDYIRSTGVNVNYSAVNFPAAIRTLKTFS
NSILTKEPKPIFAFIASQRQYSCEKVGKTMEEHCVVPDVIAKAPAQTAVV
EYPGDIVVKPGQVLTPTQVKDEPCVKWEADANKLYTLCMTDPDAPSRKDP
KFREWHHWLVGNIPGGDVAKGEVLSAYVGSGPPPDTGLHRYVFLIYEQRC
KLTFDEKRLPNNSGDGRGGFKIAEFAKKYALGNPIAGNLYQAEYDDYVPI
LYKQLGA*

BS06612.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG6180-PA 257 CG6180-PA 1..257 1..257 1374 100 Plus
CG10298-PA 187 CG10298-PA 10..183 82..255 572 59.8 Plus
CG17919-PA 202 CG17919-PA 20..199 76..255 544 56.7 Plus
Pebp1-PA 176 CG18594-PA 1..171 80..251 469 50 Plus
a5-PA 210 CG5430-PA 17..205 67..255 453 40.7 Plus