Clone BS06613 Report

Search the DGRC for BS06613

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:66
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG6971-RA
Protein status:BS06613.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06613.3prime Sequence

783 bp (782 high quality bases) assembled on 2005-12-04

> BS06613.3prime
ATGGTCTAGAAAGCTTTTACTTCTTGGGTGCGGTTATGCCCTCTAGCTGA
GCCTTCAGCTGAGCGTTGGTCTTCTTCAGGAAAGTTATCTCCTCCGTGAA
CTTCTTTTCTTCAGAGGCCCTCAGCTCAGCATTACGACGCTCTGCCTGTT
CCTGCTTAAGTTTCATATCTGCGATTATCTCCTCTAGTGCCTCTTTGTCT
AGTTCAAGAGTCTTGACCCGATCACGAAGCATTTCCTTTTCCTCATGCGC
CTGCAAAGCCTTGCGCATGCCAAAGGCTACGGAACTGCAGTACAATGTTT
CATAGGCCTCCATTGACATGGCGATCTCATCGCGGATGCGAAGCAGTAGC
AGGCCACGCTCTGAACAGTTAATGGTGACCTGGCGAATGATCTCGTCAAA
ACATTGTGAGTACAGCTCGCGGCGCACGGGACAAATACCTGTCTCACGAG
CTTGGGTCTGCTGCAGCCTAGTATCAAGCATCTCCTGCAAATTGATCACA
TCCTGGCGTGTTGCTGGAGTACTGGACACAGACTGCTGCCACAACTGGCC
ATCCTCCTCCCAGCAGCGCGGTGGCAATATAGAATTTAGAATTTCCTCAG
TTTCCCTTTTGGTATCTAGCAAAGCGCCCGCCGTTTGGGGCCTTTTCATC
TCTATCTCTGTGAGCGGAGCACCCCCTTTCTTGTCCGGGTGCTTCACCAC
CAGCACCGGGTTGTTGTAGCGCACCAGGGTCTGGAATTGACCCACGCTTG
TTATATCCAGCTCCTCCATGTCGACTGATAACT

BS06613.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG6971-PA 753 CG6971-RA 1..753 769..17 3765 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:20:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6971-RA 939 CG6971-RA 97..850 769..16 3770 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:20:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11892395..11892776 16..397 1910 100 Plus
3R 32079331 3R 11892829..11893201 397..769 1865 100 Plus
Blast to na_te.dros performed on 2015-02-09 01:20:29 has no hits.

BS06613.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:41 Download gff for BS06613.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6971-PA 1..753 17..769 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:38 Download gff for BS06613.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6971-PA 1..753 17..769 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:53:45 Download gff for BS06613.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6971-RA 90..850 16..777 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:08:00 Download gff for BS06613.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6971-RA 90..850 16..777 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:08:00 Download gff for BS06613.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11892395..11892775 16..396 100 <- Plus
3R 11892829..11893208 397..777 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:53:45 Download gff for BS06613.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7718551..7718930 397..777 98   Plus
arm_3R 7718117..7718497 16..396 100 <- Plus

BS06613.5prime Sequence

783 bp (782 high quality bases) assembled on 2005-12-04

> BS06613.5prime
GAAGTTATCAGTCGACATGGAGGAGCTGGATATAACAAGCGTGGGTCAAT
TCCAGACCCTGGTGCGCTACAACAACCCGGTGCTGGTGGTGAAGCACCCG
GACAAGAAAGGGGGTGCTCCGCTCACAGAGATAGAGATGAAAAGGCCCCA
AACGGCGGGCGCTTTGCTAGATACCAAAAGGGAAACTGAGGAAATTCTAA
ATTCTATATTGCCACCGCGCTGCTGGGAGGAGGATGGCCAGTTGTGGCAG
CAGTCTGTGTCCAGTACTCCAGCAACACGCCAGGATGTGATCAATTTGCA
GGAGATGCTTGATACTAGGCTGCAGCAGACCCAAGCTCGTGAGACAGGTA
TTTGTCCCGTGCGCCGCGAGCTGTACTCACAATGTTTTGACGAGATCATT
CGCCAGGTCACCATTAACTGTTCAGAGCGTGGCCTGCTACTGCTTCGCAT
CCGCGATGAGATCGCCATGTCAATGGAGGCCTATGAAACATTGTACTGCA
GTTCCGTAGCCTTTGGCATGCGCAAGGCTTTGCAGGCGCATGAGGAAAAG
GAAATGCTTCGTGATCGGGTCAAGACTCTTGAACTAGACAAAGAGGCACT
AGAGGAGATAATCGCAGATATGAAACTTAAGCAGGAACAGGCAGAGCGTC
GTAATGCTGAGCTGAGGGCCTCTGAAGAAAAGAAGTTCACGGAGGAGATA
ACTTTCCTGAAGAAGACCAACGCTCAGCTGAAGGCTCAGCTAGAGGGCAT
AACCGCACCCAAGAAGTAAAAGCTTTCTAGACC

BS06613.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG6971-PA 753 CG6971-RA 1..753 17..769 3765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:29:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG6971-RA 939 CG6971-RA 97..850 17..770 3770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:29:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11892395..11892776 770..389 1910 100 Minus
3R 32079331 3R 11892829..11893201 389..17 1865 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:29:52 has no hits.

BS06613.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:42 Download gff for BS06613.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6971-PA 1..753 17..769 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:40 Download gff for BS06613.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6971-PA 1..753 17..769 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:12:10 Download gff for BS06613.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6971-RA 90..850 9..770 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:56:52 Download gff for BS06613.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6971-RA 90..850 9..770 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:56:52 Download gff for BS06613.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11892395..11892775 390..770 100 <- Minus
3R 11892829..11893208 9..389 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:12:10 Download gff for BS06613.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7718117..7718497 390..770 100 <- Minus
arm_3R 7718551..7718930 9..389 98   Minus

BS06613.complete Sequence

785 bp (785 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635563

> BS06613.complete
GAAGTTATCAGTCGACATGGAGGAGCTGGATATAACAAGCGTGGGTCAAT
TCCAGACCCTGGTGCGCTACAACAACCCGGTGCTGGTGGTGAAGCACCCG
GACAAGAAAGGGGGTGCTCCGCTCACAGAGATAGAGATGAAAAGGCCCCA
AACGGCGGGCGCTTTGCTAGATACCAAAAGGGAAACTGAGGAAATTCTAA
ATTCTATATTGCCACCGCGCTGCTGGGAGGAGGATGGCCAGTTGTGGCAG
CAGTCTGTGTCCAGTACTCCAGCAACACGCCAGGATGTGATCAATTTGCA
GGAGATGCTTGATACTAGGCTGCAGCAGACCCAAGCTCGTGAGACAGGTA
TTTGTCCCGTGCGCCGCGAGCTGTACTCACAATGTTTTGACGAGATCATT
CGCCAGGTCACCATTAACTGTTCAGAGCGTGGCCTGCTACTGCTTCGCAT
CCGCGATGAGATCGCCATGTCAATGGAGGCCTATGAAACATTGTACTGCA
GTTCCGTAGCCTTTGGCATGCGCAAGGCTTTGCAGGCGCATGAGGAAAAG
GAAATGCTTCGTGATCGGGTCAAGACTCTTGAACTAGACAAAGAGGCACT
AGAGGAGATAATCGCAGATATGAAACTTAAGCAGGAACAGGCAGAGCGTC
GTAATGCTGAGCTGAGGGCCTCTGAAGAAAAGAAGTTCACGGAGGAGATA
ACTTTCCTGAAGAAGACCAACGCTCAGCTGAAGGCTCAGCTAGAGGGCAT
AACCGCACCCAAGAAGTAAAAGCTTTCTAGACCAT

BS06613.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:23:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG6971-RA 753 CG6971-PA 1..753 17..769 3765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:23:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG6971-RA 939 CG6971-RA 97..850 17..770 3770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:23:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11892395..11892776 770..389 1910 100 Minus
3R 32079331 3R 11892829..11893201 389..17 1865 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:23:48 has no hits.

BS06613.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:31 Download gff for BS06613.complete
Subject Subject Range Query Range Percent Splice Strand
CG6971-RA 1..753 17..769 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:26 Download gff for BS06613.complete
Subject Subject Range Query Range Percent Splice Strand
CG6971-RA 90..850 9..770 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:15 Download gff for BS06613.complete
Subject Subject Range Query Range Percent Splice Strand
CG6971-RA 97..847 17..767 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:31 Download gff for BS06613.complete
Subject Subject Range Query Range Percent Splice Strand
CG6971-RA 90..850 9..770 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:42 Download gff for BS06613.complete
Subject Subject Range Query Range Percent Splice Strand
CG6971-RA 97..847 17..767 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:42 Download gff for BS06613.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11892398..11892775 390..767 100 <- Minus
3R 11892829..11893201 17..389 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:15 Download gff for BS06613.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7718120..7718497 390..767 100 <- Minus
arm_3R 7718551..7718923 17..389 100   Minus

BS06613.pep Sequence

Translation from 16 to 768

> BS06613.pep
MEELDITSVGQFQTLVRYNNPVLVVKHPDKKGGAPLTEIEMKRPQTAGAL
LDTKRETEEILNSILPPRCWEEDGQLWQQSVSSTPATRQDVINLQEMLDT
RLQQTQARETGICPVRRELYSQCFDEIIRQVTINCSERGLLLLRIRDEIA
MSMEAYETLYCSSVAFGMRKALQAHEEKEMLRDRVKTLELDKEALEEIIA
DMKLKQEQAERRNAELRASEEKKFTEEITFLKKTNAQLKAQLEGITAPKK
*

BS06613.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG6971-PA 250 CG6971-PA 1..250 1..250 1263 100 Plus