Clone Sequence Records
BS06613.3prime Sequence
783 bp (782 high quality bases) assembled on 2005-12-04
> BS06613.3prime
ATGGTCTAGAAAGCTTTTACTTCTTGGGTGCGGTTATGCCCTCTAGCTGA
GCCTTCAGCTGAGCGTTGGTCTTCTTCAGGAAAGTTATCTCCTCCGTGAA
CTTCTTTTCTTCAGAGGCCCTCAGCTCAGCATTACGACGCTCTGCCTGTT
CCTGCTTAAGTTTCATATCTGCGATTATCTCCTCTAGTGCCTCTTTGTCT
AGTTCAAGAGTCTTGACCCGATCACGAAGCATTTCCTTTTCCTCATGCGC
CTGCAAAGCCTTGCGCATGCCAAAGGCTACGGAACTGCAGTACAATGTTT
CATAGGCCTCCATTGACATGGCGATCTCATCGCGGATGCGAAGCAGTAGC
AGGCCACGCTCTGAACAGTTAATGGTGACCTGGCGAATGATCTCGTCAAA
ACATTGTGAGTACAGCTCGCGGCGCACGGGACAAATACCTGTCTCACGAG
CTTGGGTCTGCTGCAGCCTAGTATCAAGCATCTCCTGCAAATTGATCACA
TCCTGGCGTGTTGCTGGAGTACTGGACACAGACTGCTGCCACAACTGGCC
ATCCTCCTCCCAGCAGCGCGGTGGCAATATAGAATTTAGAATTTCCTCAG
TTTCCCTTTTGGTATCTAGCAAAGCGCCCGCCGTTTGGGGCCTTTTCATC
TCTATCTCTGTGAGCGGAGCACCCCCTTTCTTGTCCGGGTGCTTCACCAC
CAGCACCGGGTTGTTGTAGCGCACCAGGGTCTGGAATTGACCCACGCTTG
TTATATCCAGCTCCTCCATGTCGACTGATAACT
BS06613.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6971-PA | 753 | CG6971-RA | 1..753 | 769..17 | 3765 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:20:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6971-RA | 939 | CG6971-RA | 97..850 | 769..16 | 3770 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:20:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11892395..11892776 | 16..397 | 1910 | 100 | Plus |
3R | 32079331 | 3R | 11892829..11893201 | 397..769 | 1865 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 01:20:29 has no hits.
BS06613.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:41 Download gff for
BS06613.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6971-PA | 1..753 | 17..769 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:38 Download gff for
BS06613.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6971-PA | 1..753 | 17..769 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:53:45 Download gff for
BS06613.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6971-RA | 90..850 | 16..777 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:08:00 Download gff for
BS06613.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6971-RA | 90..850 | 16..777 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:08:00 Download gff for
BS06613.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11892395..11892775 | 16..396 | 100 | <- | Plus |
3R | 11892829..11893208 | 397..777 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:53:45 Download gff for
BS06613.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7718551..7718930 | 397..777 | 98 | | Plus |
arm_3R | 7718117..7718497 | 16..396 | 100 | <- | Plus |
BS06613.5prime Sequence
783 bp (782 high quality bases) assembled on 2005-12-04
> BS06613.5prime
GAAGTTATCAGTCGACATGGAGGAGCTGGATATAACAAGCGTGGGTCAAT
TCCAGACCCTGGTGCGCTACAACAACCCGGTGCTGGTGGTGAAGCACCCG
GACAAGAAAGGGGGTGCTCCGCTCACAGAGATAGAGATGAAAAGGCCCCA
AACGGCGGGCGCTTTGCTAGATACCAAAAGGGAAACTGAGGAAATTCTAA
ATTCTATATTGCCACCGCGCTGCTGGGAGGAGGATGGCCAGTTGTGGCAG
CAGTCTGTGTCCAGTACTCCAGCAACACGCCAGGATGTGATCAATTTGCA
GGAGATGCTTGATACTAGGCTGCAGCAGACCCAAGCTCGTGAGACAGGTA
TTTGTCCCGTGCGCCGCGAGCTGTACTCACAATGTTTTGACGAGATCATT
CGCCAGGTCACCATTAACTGTTCAGAGCGTGGCCTGCTACTGCTTCGCAT
CCGCGATGAGATCGCCATGTCAATGGAGGCCTATGAAACATTGTACTGCA
GTTCCGTAGCCTTTGGCATGCGCAAGGCTTTGCAGGCGCATGAGGAAAAG
GAAATGCTTCGTGATCGGGTCAAGACTCTTGAACTAGACAAAGAGGCACT
AGAGGAGATAATCGCAGATATGAAACTTAAGCAGGAACAGGCAGAGCGTC
GTAATGCTGAGCTGAGGGCCTCTGAAGAAAAGAAGTTCACGGAGGAGATA
ACTTTCCTGAAGAAGACCAACGCTCAGCTGAAGGCTCAGCTAGAGGGCAT
AACCGCACCCAAGAAGTAAAAGCTTTCTAGACC
BS06613.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6971-PA | 753 | CG6971-RA | 1..753 | 17..769 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:29:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6971-RA | 939 | CG6971-RA | 97..850 | 17..770 | 3770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:29:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11892395..11892776 | 770..389 | 1910 | 100 | Minus |
3R | 32079331 | 3R | 11892829..11893201 | 389..17 | 1865 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:29:52 has no hits.
BS06613.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:42 Download gff for
BS06613.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6971-PA | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:40 Download gff for
BS06613.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6971-PA | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:12:10 Download gff for
BS06613.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6971-RA | 90..850 | 9..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:56:52 Download gff for
BS06613.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6971-RA | 90..850 | 9..770 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:56:52 Download gff for
BS06613.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11892395..11892775 | 390..770 | 100 | <- | Minus |
3R | 11892829..11893208 | 9..389 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:12:10 Download gff for
BS06613.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7718117..7718497 | 390..770 | 100 | <- | Minus |
arm_3R | 7718551..7718930 | 9..389 | 98 | | Minus |
BS06613.complete Sequence
785 bp (785 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635563
> BS06613.complete
GAAGTTATCAGTCGACATGGAGGAGCTGGATATAACAAGCGTGGGTCAAT
TCCAGACCCTGGTGCGCTACAACAACCCGGTGCTGGTGGTGAAGCACCCG
GACAAGAAAGGGGGTGCTCCGCTCACAGAGATAGAGATGAAAAGGCCCCA
AACGGCGGGCGCTTTGCTAGATACCAAAAGGGAAACTGAGGAAATTCTAA
ATTCTATATTGCCACCGCGCTGCTGGGAGGAGGATGGCCAGTTGTGGCAG
CAGTCTGTGTCCAGTACTCCAGCAACACGCCAGGATGTGATCAATTTGCA
GGAGATGCTTGATACTAGGCTGCAGCAGACCCAAGCTCGTGAGACAGGTA
TTTGTCCCGTGCGCCGCGAGCTGTACTCACAATGTTTTGACGAGATCATT
CGCCAGGTCACCATTAACTGTTCAGAGCGTGGCCTGCTACTGCTTCGCAT
CCGCGATGAGATCGCCATGTCAATGGAGGCCTATGAAACATTGTACTGCA
GTTCCGTAGCCTTTGGCATGCGCAAGGCTTTGCAGGCGCATGAGGAAAAG
GAAATGCTTCGTGATCGGGTCAAGACTCTTGAACTAGACAAAGAGGCACT
AGAGGAGATAATCGCAGATATGAAACTTAAGCAGGAACAGGCAGAGCGTC
GTAATGCTGAGCTGAGGGCCTCTGAAGAAAAGAAGTTCACGGAGGAGATA
ACTTTCCTGAAGAAGACCAACGCTCAGCTGAAGGCTCAGCTAGAGGGCAT
AACCGCACCCAAGAAGTAAAAGCTTTCTAGACCAT
BS06613.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:23:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6971-RA | 753 | CG6971-PA | 1..753 | 17..769 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:23:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6971-RA | 939 | CG6971-RA | 97..850 | 17..770 | 3770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:23:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11892395..11892776 | 770..389 | 1910 | 100 | Minus |
3R | 32079331 | 3R | 11892829..11893201 | 389..17 | 1865 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:23:48 has no hits.
BS06613.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:31 Download gff for
BS06613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6971-RA | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:26 Download gff for
BS06613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6971-RA | 90..850 | 9..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:15 Download gff for
BS06613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6971-RA | 97..847 | 17..767 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:31 Download gff for
BS06613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6971-RA | 90..850 | 9..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:42 Download gff for
BS06613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6971-RA | 97..847 | 17..767 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:42 Download gff for
BS06613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11892398..11892775 | 390..767 | 100 | <- | Minus |
3R | 11892829..11893201 | 17..389 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:15 Download gff for
BS06613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7718120..7718497 | 390..767 | 100 | <- | Minus |
arm_3R | 7718551..7718923 | 17..389 | 100 | | Minus |
BS06613.pep Sequence
Translation from 16 to 768
> BS06613.pep
MEELDITSVGQFQTLVRYNNPVLVVKHPDKKGGAPLTEIEMKRPQTAGAL
LDTKRETEEILNSILPPRCWEEDGQLWQQSVSSTPATRQDVINLQEMLDT
RLQQTQARETGICPVRRELYSQCFDEIIRQVTINCSERGLLLLRIRDEIA
MSMEAYETLYCSSVAFGMRKALQAHEEKEMLRDRVKTLELDKEALEEIIA
DMKLKQEQAERRNAELRASEEKKFTEEITFLKKTNAQLKAQLEGITAPKK
*
BS06613.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6971-PA | 250 | CG6971-PA | 1..250 | 1..250 | 1263 | 100 | Plus |