Clone Sequence Records
BS06617.3prime Sequence
894 bp (837 high quality bases) assembled on 2005-12-04
> BS06617.3prime
ATGGTCTAGAAAGCTTCTACACCCTGTAGAAGCACTCCCTGGCCTGTGGC
TCGCAATTGTCGTAGGGTTTCAGCATGGCATCACCGTGAGCCACCTTGCC
GCCGGCATCGATCTCGTCCAGCTCCGCATCCGGCACACAGGCGCACTGGA
AACTCTTGTTGCCGCGACTGTACAGCTTGCGCGGATAACCGATCCAGGAG
CGCTCCTTGCCATCGCCACTGGTCGTGGTGCACCAGACGCGAGTGCCGCG
CTCCTCGCTCCACTCGATATTGCAGCCGGGATACCGGGCACGCAGCTCCT
CCACCTGTCGCTTGGCATCTCGTGCCTGCTCCAGCAGCTCCAGAAACTTA
TGATGATAGGTGGTCAGGGCGCCCTTCTCATCGTAGAAGCGCCCAATTAC
CCGTCCCTTGTAGACGTAGTCCTTTTGATAGAAATCCCGCCATCCGGCCA
AACCAATCAGGTCGTCCGGCTTTAGGGTTAACACATCGTCGGCCGTTTCC
GGATCGTACGTCTCAAAATCACCGGAAATGAAGGATACGGAGGCGTCGCG
ACCCACGAAGAAGTTGTAGCTGCAGCCGGATCCGTAATGCTTAATGCCGC
GGCTCACATCGAAGACGGAACCGAGTAGAGCCAGGTAAAGCGGACGACCC
TCTTCCTCGCCATTGAATTTGGCCAACTCGGCCGGTGTAAAGAGCGTGCC
GATATCGTCACCAGCTTGGAACGCCAGGGGAATGCTCGCATCCTGCCCAG
CTTGGTCCAGGTAGTTGTCCGTTTGGCGACGCANGAACTGCCTAATCTCT
GTGTGATAAATTCCGCCCAGAACGGCTGCCACAACGAAAAGAAATTGAAA
TTTGAACAGGTGTCGCAGCAATCCGAACATGTCGACTGATAACT
BS06617.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12056-PA | 864 | CG12056-RA | 1..864 | 880..17 | 4301 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:46:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12056-RA | 952 | CG12056-RA | 24..891 | 880..13 | 4314 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:46:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9192692..9193559 | 880..13 | 4314 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-01-31 16:46:30 has no hits.
BS06617.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:50 Download gff for
BS06617.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12056-PA | 1..864 | 17..880 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:50 Download gff for
BS06617.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12056-PA | 1..864 | 17..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:27:11 Download gff for
BS06617.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12056-RA | 24..891 | 13..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:44:50 Download gff for
BS06617.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12056-RA | 24..891 | 13..880 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:44:50 Download gff for
BS06617.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9192692..9193559 | 13..880 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:27:11 Download gff for
BS06617.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9086725..9087592 | 13..880 | 99 | | Minus |
BS06617.5prime Sequence
889 bp (779 high quality bases) assembled on 2005-12-04
> BS06617.5prime
GAAGTTATCAGTCGACATGTTCGGATTGCTGCGACACCTGTTCAAATTTC
AATTTCTTTTCGTTGTGGCAGCCGTTCTGGGCGGAATTTATCACACAGAG
ATTAGGCAGTTCCTGCGTCGCCAAACGGACAACTACCTGGACCAAGCTGG
GCAGGATGCGAGCATTCCCCTGGCGTTCCAAGCTGGTGACGATATCGGCA
CGCTCTTTACACCGGCCGAGTTGGCCAAATTCAATGGCGAGGAAGAGGGT
CGTCCGCTTTACCTGGCTCTACTCGGTTCCGTCTTCGATGTGAGCCGCGG
CATTAAGCATTACGGATCCGGCTGCAGCTACAACTTCTTCGTGGGTCGCG
ACGCCTCCGTATCCTTCATTTCCGGTGATTTTGAGACGTACGATCCGGAA
ACGGCCGACGATGTGTTAACCCTAAAGCCGGACGACCTGATTGGTTTGGC
CGGATGGCGGGATTTCTATCAAAAGGACTACGTCTACAAGGGACGGGTAA
TTGGGCGCTTCTACGATGAGAAGGGCGCCCTGACCACCTATCATCATAAG
TTTCTGGAGCTGCTGGAGCAGGCACGAGATGCCAAGCGACAGGTGGAGGA
GCTGCGTGCCCGGTATCCCGGCTGCAATATCGAGTGGAGCGAGGAGCGCG
GCACTCGCGTCTGGTGCACCACGACCAGTGGCGATGGCAAGGAGCGCTCC
TGGATCGGTTATCCGCGCAAGCTGTACAGTCGCGGCAACAAGAGTTTCCA
GTGCGCCTGTGTGCCGGATGCGGAGCTGGACGAGATCGATGCCGGCGGCA
AGGTGGCTCACGGTGATGCCATGCTGAAACCCTACGACAATTGCGAGCCA
CAGGCCAGGGAGTGCTTCTACAGGGTGTAGAAGCTTTCT
BS06617.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12056-PA | 864 | CG12056-RA | 1..864 | 17..880 | 4320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:35:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12056-RA | 952 | CG12056-RA | 24..891 | 17..884 | 4325 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:35:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9192692..9193559 | 17..884 | 4325 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:35:16 has no hits.
BS06617.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:50 Download gff for
BS06617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12056-PA | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:53 Download gff for
BS06617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12056-PA | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:30:21 Download gff for
BS06617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12056-RA | 24..891 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:51:42 Download gff for
BS06617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12056-RA | 24..891 | 17..884 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:51:42 Download gff for
BS06617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9192692..9193559 | 17..884 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:30:21 Download gff for
BS06617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9086725..9087592 | 17..884 | 99 | | Plus |
BS06617.complete Sequence
896 bp (896 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635564
> BS06617.complete
GAAGTTATCAGTCGACATGTTCGGATTGCTGCGACACCTGTTCAAATTTC
AATTTCTTTTCGTTGTGGCAGCCGTTCTGGGCGGAATTTATCACACAGAG
ATTAGGCAGTTCCTGCGTCGCCAAACGGACAACTACCTGGACCAAGCTGG
GCAGGATGCGAGCATTCCCCTGGCGTTCCAAGCTGGTGACGATATCGGCA
CGCTCTTTACACCGGCCGAGTTGGCCAAATTCAATGGCGAGGAAGAGGGT
CGTCCGCTTTACCTGGCTCTACTCGGTTCCGTCTTCGATGTGAGCCGCGG
CATTAAGCATTACGGATCCGGCTGCAGCTACAACTTCTTCGTGGGTCGCG
ACGCCTCCGTATCCTTCATTTCCGGTGATTTTGAGACGTACGATCCGGAA
ACGGCCGACGATGTGTTAACCCTAAAGCCGGACGACCTGATTGGTTTGGC
CGGATGGCGGGATTTCTATCAAAAGGACTACGTCTACAAGGGACGGGTAA
TTGGGCGCTTCTACGATGAGAAGGGCGCCCTGACCACCTATCATCATAAG
TTTCTGGAGCTGCTGGAGCAGGCACGAGATGCCAAGCGACAGGTGGAGGA
GCTGCGTGCCCGGTATCCCGGCTGCAATATCGAGTGGAGCGAGGAGCGCG
GCACTCGCGTCTGGTGCACCACGACCAGTGGCGATGGCAAGGAGCGCTCC
TGGATCGGTTATCCGCGCAAGCTGTACAGTCGCGGCAACAAGAGTTTCCA
GTGCGCCTGTGTGCCGGATGCGGAGCTGGACGAGATCGATGCCGGCGGCA
AGGTGGCTCACGGTGATGCCATGCTGAAACCCTACGACAATTGCGAGCCA
CAGGCCAGGGAGTGCTTCTACAGGGTGTAGAAGCTTTCTAGACCAT
BS06617.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:02:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12056-RA | 864 | CG12056-PA | 1..864 | 17..880 | 4320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12056-RA | 952 | CG12056-RA | 24..891 | 17..884 | 4325 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9192692..9193559 | 17..884 | 4325 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:02:19 has no hits.
BS06617.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:32 Download gff for
BS06617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12056-RA | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:28 Download gff for
BS06617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12056-RA | 24..891 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:23 Download gff for
BS06617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12056-RA | 29..887 | 22..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:32 Download gff for
BS06617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12056-RA | 24..891 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:28 Download gff for
BS06617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12056-RA | 29..887 | 22..880 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:28 Download gff for
BS06617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9192697..9193555 | 22..880 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:23 Download gff for
BS06617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9086730..9087588 | 22..880 | 100 | | Plus |
BS06617.pep Sequence
Translation from 16 to 879
> BS06617.pep
MFGLLRHLFKFQFLFVVAAVLGGIYHTEIRQFLRRQTDNYLDQAGQDASI
PLAFQAGDDIGTLFTPAELAKFNGEEEGRPLYLALLGSVFDVSRGIKHYG
SGCSYNFFVGRDASVSFISGDFETYDPETADDVLTLKPDDLIGLAGWRDF
YQKDYVYKGRVIGRFYDEKGALTTYHHKFLELLEQARDAKRQVEELRARY
PGCNIEWSEERGTRVWCTTTSGDGKERSWIGYPRKLYSRGNKSFQCACVP
DAELDEIDAGGKVAHGDAMLKPYDNCEPQARECFYRV*
BS06617.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12056-PA | 287 | CG12056-PA | 1..287 | 1..287 | 1546 | 100 | Plus |
