Clone BS06619 Report

Search the DGRC for BS06619

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:66
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptATPsyn-b-RB
Protein status:BS06619.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06619.3prime Sequence

510 bp (509 high quality bases) assembled on 2005-12-04

> BS06619.3prime
ATGGTCTAGAAAGCTTTTAGGCAGACTTGACGCGCAGTGCCAGAGCGCTC
AGATCGGCGATGCACTTGTTGAGAGTCTCCTTCTCCTGCTGGGGAGAGAT
GCTGGCCAACACATTGGTGGTGATCCAGTTGACCATGTGCTTCTGGCTAA
GGCGACGCTCGACGTGGCGGCACTCCACCTGGTAGTCGAGACGACGCTTC
ACCTCCGAGTACACATTCATGGCGCGCTCACGGAACGCGGCCTCCAGCTG
CAATGCAATGTTCTCCTTCTTGGCTTCCATCAGCAGCAGGGCACCGTCGG
CGCGCCACTGCTCCTTCTTCTCGGCCTCGATGGCGTCGGAGAGGACCTTC
AGCTCAGCCTCGCGTCCCTCCTTCCACTCAGATTCGATTTTATCGATCTC
GCCATCAGCCCACTTGGCGATGACCGGGCCGAGCTTCTTGACAGCAATGA
TGGCCATGATACCGAGCGACAGACCGCTGTAGTACTCGTGCTCCATGTCG
ACTGATAACT

BS06619.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG8189-PA 732 ATPsyn-b-RA 252..732 497..17 2405 100 Minus
CG8189-PB 480 ATPsyn-b-RB 1..480 496..17 2400 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-b-RA 918 CG8189-RA 321..802 497..16 2410 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:24:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9730733..9731108 391..16 1880 100 Minus
3L 28110227 3L 9730535..9730640 497..392 530 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:24:57 has no hits.

BS06619.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:54 Download gff for BS06619.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8189-PA 244..732 17..506 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:57 Download gff for BS06619.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8189-PA 244..732 17..506 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:04:38 Download gff for BS06619.3prime
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-b-RA 313..811 6..506 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:15 Download gff for BS06619.3prime
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-b-RA 313..811 6..506 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:15 Download gff for BS06619.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9730733..9731117 6..391 98   Minus
3L 9730527..9730640 392..506 96 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:04:38 Download gff for BS06619.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9723627..9723740 392..506 96 -> Minus
arm_3L 9723833..9724217 6..391 98   Minus

BS06619.5prime Sequence

510 bp (509 high quality bases) assembled on 2005-12-04

> BS06619.5prime
GAAGTTATCAGTCGACATGGAGCACGAGTACTACAGCGGTCTGTCGCTCG
GTATCATGGCCATCATTGCTGTCAAGAAGCTCGGCCCGGTCATCGCCAAG
TGGGCTGATGGCGAGATCGATAAAATCGAATCTGAGTGGAAGGAGGGACG
CGAGGCTGAGCTGAAGGTCCTCTCCGACGCCATCGAGGCCGAGAAGAAGG
AGCAGTGGCGCGCCGACGGTGCCCTGCTGCTGATGGAAGCCAAGAAGGAG
AACATTGCATTGCAGCTGGAGGCCGCGTTCCGTGAGCGCGCCATGAATGT
GTACTCGGAGGTGAAGCGTCGTCTCGACTACCAGGTGGAGTGCCGCCACG
TCGAGCGTCGCCTTAGCCAGAAGCACATGGTCAACTGGATCACCACCAAT
GTGTTGGCCAGCATCTCTCCCCAGCAGGAGAAGGAGACTCTCAACAAGTG
CATCGCCGATCTGAGCGCTCTGGCACTGCGCGTCAAGTCTGCCTAAAAGC
TTTCTAGACC

BS06619.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG8189-PA 732 ATPsyn-b-RA 252..732 16..496 2405 100 Plus
CG8189-PB 480 ATPsyn-b-RB 1..480 17..496 2400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:00:54
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-b-RA 918 CG8189-RA 321..802 16..497 2410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:00:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9730733..9731108 122..497 1880 100 Plus
3L 28110227 3L 9730535..9730640 16..121 530 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:00:50 has no hits.

BS06619.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:55 Download gff for BS06619.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8189-PA 244..732 7..496 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:58 Download gff for BS06619.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8189-PA 244..732 7..496 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:30:25 Download gff for BS06619.5prime
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-b-RA 313..811 7..507 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:01:47 Download gff for BS06619.5prime
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-b-RA 313..811 7..507 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:01:47 Download gff for BS06619.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9730527..9730640 7..121 96 -> Plus
3L 9730733..9731117 122..507 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:30:25 Download gff for BS06619.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9723627..9723740 7..121 96 -> Plus
arm_3L 9723833..9724217 122..507 98   Plus

BS06619.complete Sequence

512 bp (512 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635565

> BS06619.complete
GAAGTTATCAGTCGACATGGAGCACGAGTACTACAGCGGTCTGTCGCTCG
GTATCATGGCCATCATTGCTGTCAAGAAGCTCGGCCCGGTCATCGCCAAG
TGGGCTGATGGCGAGATCGATAAAATCGAATCTGAGTGGAAGGAGGGACG
CGAGGCTGAGCTGAAGGTCCTCTCCGACGCCATCGAGGCCGAGAAGAAGG
AGCAGTGGCGCGCCGACGGTGCCCTGCTGCTGATGGAAGCCAAGAAGGAG
AACATTGCATTGCAGCTGGAGGCCGCGTTCCGTGAGCGCGCCATGAATGT
GTACTCGGAGGTGAAGCGTCGTCTCGACTACCAGGTGGAGTGCCGCCACG
TCGAGCGTCGCCTTAGCCAGAAGCACATGGTCAACTGGATCACCACCAAT
GTGTTGGCCAGCATCTCTCCCCAGCAGGAGAAGGAGACTCTCAACAAGTG
CATCGCCGATCTGAGCGCTCTGGCACTGCGCGTCAAGTCTGCCTAAAAGC
TTTCTAGACCAT

BS06619.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:29:00
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-b-RA 732 CG8189-PA 252..732 16..496 2405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:29:01
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-b-RA 918 CG8189-RA 321..802 16..497 2410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9730733..9731108 122..497 1880 100 Plus
3L 28110227 3L 9730535..9730640 16..121 530 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:28:59 has no hits.

BS06619.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:52 Download gff for BS06619.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-b-RA 244..732 7..496 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:04 Download gff for BS06619.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-b-RB 551..1049 7..507 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:50 Download gff for BS06619.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-b-RA 322..799 17..494 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:52 Download gff for BS06619.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-b-RB 551..1049 7..507 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:54 Download gff for BS06619.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-b-RA 322..799 17..494 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:54 Download gff for BS06619.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9730536..9730640 17..121 100 -> Plus
3L 9730733..9731105 122..494 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:50 Download gff for BS06619.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9723636..9723740 17..121 100 -> Plus
arm_3L 9723833..9724205 122..494 100   Plus

BS06619.pep Sequence

Translation from 16 to 495

> BS06619.pep
MEHEYYSGLSLGIMAIIAVKKLGPVIAKWADGEIDKIESEWKEGREAELK
VLSDAIEAEKKEQWRADGALLLMEAKKENIALQLEAAFRERAMNVYSEVK
RRLDYQVECRHVERRLSQKHMVNWITTNVLASISPQQEKETLNKCIADLS
ALALRVKSA*

BS06619.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:19
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-b-PA 243 CG8189-PA 85..243 1..159 799 100 Plus
CG17300-PA 152 CG17300-PA 80..133 1..53 142 55.6 Plus