Clone Sequence Records
BS06619.3prime Sequence
510 bp (509 high quality bases) assembled on 2005-12-04
> BS06619.3prime
ATGGTCTAGAAAGCTTTTAGGCAGACTTGACGCGCAGTGCCAGAGCGCTC
AGATCGGCGATGCACTTGTTGAGAGTCTCCTTCTCCTGCTGGGGAGAGAT
GCTGGCCAACACATTGGTGGTGATCCAGTTGACCATGTGCTTCTGGCTAA
GGCGACGCTCGACGTGGCGGCACTCCACCTGGTAGTCGAGACGACGCTTC
ACCTCCGAGTACACATTCATGGCGCGCTCACGGAACGCGGCCTCCAGCTG
CAATGCAATGTTCTCCTTCTTGGCTTCCATCAGCAGCAGGGCACCGTCGG
CGCGCCACTGCTCCTTCTTCTCGGCCTCGATGGCGTCGGAGAGGACCTTC
AGCTCAGCCTCGCGTCCCTCCTTCCACTCAGATTCGATTTTATCGATCTC
GCCATCAGCCCACTTGGCGATGACCGGGCCGAGCTTCTTGACAGCAATGA
TGGCCATGATACCGAGCGACAGACCGCTGTAGTACTCGTGCTCCATGTCG
ACTGATAACT
BS06619.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8189-PA | 732 | ATPsyn-b-RA | 252..732 | 497..17 | 2405 | 100 | Minus |
CG8189-PB | 480 | ATPsyn-b-RB | 1..480 | 496..17 | 2400 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:24:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-b-RA | 918 | CG8189-RA | 321..802 | 497..16 | 2410 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:24:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9730733..9731108 | 391..16 | 1880 | 100 | Minus |
3L | 28110227 | 3L | 9730535..9730640 | 497..392 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:24:57 has no hits.
BS06619.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:54 Download gff for
BS06619.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8189-PA | 244..732 | 17..506 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:57 Download gff for
BS06619.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8189-PA | 244..732 | 17..506 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:04:38 Download gff for
BS06619.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-b-RA | 313..811 | 6..506 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:15 Download gff for
BS06619.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-b-RA | 313..811 | 6..506 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:15 Download gff for
BS06619.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9730733..9731117 | 6..391 | 98 | | Minus |
3L | 9730527..9730640 | 392..506 | 96 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:04:38 Download gff for
BS06619.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9723627..9723740 | 392..506 | 96 | -> | Minus |
arm_3L | 9723833..9724217 | 6..391 | 98 | | Minus |
BS06619.5prime Sequence
510 bp (509 high quality bases) assembled on 2005-12-04
> BS06619.5prime
GAAGTTATCAGTCGACATGGAGCACGAGTACTACAGCGGTCTGTCGCTCG
GTATCATGGCCATCATTGCTGTCAAGAAGCTCGGCCCGGTCATCGCCAAG
TGGGCTGATGGCGAGATCGATAAAATCGAATCTGAGTGGAAGGAGGGACG
CGAGGCTGAGCTGAAGGTCCTCTCCGACGCCATCGAGGCCGAGAAGAAGG
AGCAGTGGCGCGCCGACGGTGCCCTGCTGCTGATGGAAGCCAAGAAGGAG
AACATTGCATTGCAGCTGGAGGCCGCGTTCCGTGAGCGCGCCATGAATGT
GTACTCGGAGGTGAAGCGTCGTCTCGACTACCAGGTGGAGTGCCGCCACG
TCGAGCGTCGCCTTAGCCAGAAGCACATGGTCAACTGGATCACCACCAAT
GTGTTGGCCAGCATCTCTCCCCAGCAGGAGAAGGAGACTCTCAACAAGTG
CATCGCCGATCTGAGCGCTCTGGCACTGCGCGTCAAGTCTGCCTAAAAGC
TTTCTAGACC
BS06619.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8189-PA | 732 | ATPsyn-b-RA | 252..732 | 16..496 | 2405 | 100 | Plus |
CG8189-PB | 480 | ATPsyn-b-RB | 1..480 | 17..496 | 2400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:00:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-b-RA | 918 | CG8189-RA | 321..802 | 16..497 | 2410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:00:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9730733..9731108 | 122..497 | 1880 | 100 | Plus |
3L | 28110227 | 3L | 9730535..9730640 | 16..121 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:00:50 has no hits.
BS06619.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:55 Download gff for
BS06619.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8189-PA | 244..732 | 7..496 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:58 Download gff for
BS06619.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8189-PA | 244..732 | 7..496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:30:25 Download gff for
BS06619.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-b-RA | 313..811 | 7..507 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:01:47 Download gff for
BS06619.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-b-RA | 313..811 | 7..507 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:01:47 Download gff for
BS06619.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9730527..9730640 | 7..121 | 96 | -> | Plus |
3L | 9730733..9731117 | 122..507 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:30:25 Download gff for
BS06619.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9723627..9723740 | 7..121 | 96 | -> | Plus |
arm_3L | 9723833..9724217 | 122..507 | 98 | | Plus |
BS06619.complete Sequence
512 bp (512 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635565
> BS06619.complete
GAAGTTATCAGTCGACATGGAGCACGAGTACTACAGCGGTCTGTCGCTCG
GTATCATGGCCATCATTGCTGTCAAGAAGCTCGGCCCGGTCATCGCCAAG
TGGGCTGATGGCGAGATCGATAAAATCGAATCTGAGTGGAAGGAGGGACG
CGAGGCTGAGCTGAAGGTCCTCTCCGACGCCATCGAGGCCGAGAAGAAGG
AGCAGTGGCGCGCCGACGGTGCCCTGCTGCTGATGGAAGCCAAGAAGGAG
AACATTGCATTGCAGCTGGAGGCCGCGTTCCGTGAGCGCGCCATGAATGT
GTACTCGGAGGTGAAGCGTCGTCTCGACTACCAGGTGGAGTGCCGCCACG
TCGAGCGTCGCCTTAGCCAGAAGCACATGGTCAACTGGATCACCACCAAT
GTGTTGGCCAGCATCTCTCCCCAGCAGGAGAAGGAGACTCTCAACAAGTG
CATCGCCGATCTGAGCGCTCTGGCACTGCGCGTCAAGTCTGCCTAAAAGC
TTTCTAGACCAT
BS06619.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:29:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-b-RA | 732 | CG8189-PA | 252..732 | 16..496 | 2405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:29:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-b-RA | 918 | CG8189-RA | 321..802 | 16..497 | 2410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:28:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9730733..9731108 | 122..497 | 1880 | 100 | Plus |
3L | 28110227 | 3L | 9730535..9730640 | 16..121 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:28:59 has no hits.
BS06619.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:52 Download gff for
BS06619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-b-RA | 244..732 | 7..496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:04 Download gff for
BS06619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-b-RB | 551..1049 | 7..507 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:50 Download gff for
BS06619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-b-RA | 322..799 | 17..494 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:52 Download gff for
BS06619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-b-RB | 551..1049 | 7..507 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:54 Download gff for
BS06619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-b-RA | 322..799 | 17..494 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:54 Download gff for
BS06619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9730536..9730640 | 17..121 | 100 | -> | Plus |
3L | 9730733..9731105 | 122..494 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:50 Download gff for
BS06619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9723636..9723740 | 17..121 | 100 | -> | Plus |
arm_3L | 9723833..9724205 | 122..494 | 100 | | Plus |
BS06619.pep Sequence
Translation from 16 to 495
> BS06619.pep
MEHEYYSGLSLGIMAIIAVKKLGPVIAKWADGEIDKIESEWKEGREAELK
VLSDAIEAEKKEQWRADGALLLMEAKKENIALQLEAAFRERAMNVYSEVK
RRLDYQVECRHVERRLSQKHMVNWITTNVLASISPQQEKETLNKCIADLS
ALALRVKSA*
BS06619.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-b-PA | 243 | CG8189-PA | 85..243 | 1..159 | 799 | 100 | Plus |
CG17300-PA | 152 | CG17300-PA | 80..133 | 1..53 | 142 | 55.6 | Plus |