Clone BS06620 Report

Search the DGRC for BS06620

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:66
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptFnta-RA
Protein status:BS06620.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06620.3prime Sequence

949 bp (855 high quality bases) assembled on 2005-12-04

> BS06620.3prime
ATGGTCTAGAAAGCTTCTACTTCTGTTCGACCGTGCTTAGCTGGTTCTTC
AGATGGTTGGCCACATACTGCCAGTACTTGCGACGAATCACATCGTGTTT
GGTGGCCATGTCCTCGCACAGACCGTACACCTTGCGGGCGAGTTGATCGC
TATCGCTGGCCTTTAGTTGGAGCGCCTGCTCCTGGTAGAGATCGATGAGG
AAGGCCAGCAGGTAGGGCGATCGATTGCCAGCCTGGTAGAGCTCCTCCAC
AAAGTCCACGACATCCGGGTAGCTGCTCAGCAGGGCATTTCCACTGTCGC
CCTGCCGCATCACGCCCACCAAATAGTTCCAGGCACTCTCGTTGTTTTTG
ATGATGCGAATGCGATTCATCGTGTACGACAGTTCGCGCTGGATCAGCTC
CGGCGTGAATCCAAAATGCTTGATCACAAAGAAGCGCTGGTTCCAGGCCG
AATTGTTGCGCTGATCCTCGCTAATGAGACGATCCACAAAGCTAAGTTCA
TCGTCATAGAGATTAAAGCTGCGAATGGCCCACTGGCGATGTTGCCAGGC
GTGGTAGTTCTTGGCATCGCCATCGTTGACCAGGGCGTTCTCAGTAAGCT
CCAGCTCGTTGCTGGGATCGTTCAGCATCTCGACGATGACGCGACGGTGG
TGCCAAACCTGGTAGTTTTTCGAGTTCTGGCCAATCACCTCGGTCAGATA
GTCCAGTTCCGCATACAGATCAGCCTTTAGTTCGCGCAGAACGTCGCGTC
TGTATTGCCAGACCGTGTAGTTAGCCGGATTCAGACGCAGTGCGTCCGTG
GTTAGGTCCAAGGCACGTTGGCTCTTCTCCCCCGCGCATTATGGCCCTCA
TGTAGTCGAAACCTCGCGAAACTTTTGACTGTAAGCATGGACACACCGGA
TTGGGGACGTCGTCCTGGGCGAGCGGTGCACATCTTCCCAGTCGGAGCG

BS06620.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG2976-PA 996 CG2976-RA 180..996 833..17 4085 100 Minus
CG2976-PA 996 CG2976-RA 123..149 887..861 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:50:32
Subject Length Description Subject Range Query Range Score Percent Strand
Fnta-RB 1352 CG2976-RB 144..1086 949..13 4520 99 Minus
Fnta-RA 1185 CG2976-RA 144..1086 949..13 4520 99 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 14:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4829480..4829984 13..517 2495 99.6 Plus
2L 23513712 2L 4830040..4830400 513..870 1655 99.2 Plus
2L 23513712 2L 4830469..4830550 871..949 230 93.9 Plus
Blast to na_te.dros performed on 2015-01-30 14:50:28 has no hits.

BS06620.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:56 Download gff for BS06620.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2976-PA 58..996 17..949 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:59 Download gff for BS06620.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2976-PA 58..996 17..949 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:07:01 Download gff for BS06620.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2976-RA 144..1086 13..949 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:37:33 Download gff for BS06620.3prime
Subject Subject Range Query Range Percent Splice Strand
Fnta-RA 144..1086 13..949 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:37:33 Download gff for BS06620.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 4829480..4829979 13..512 99 <- Plus
2L 4830040..4830400 513..870 99 <- Plus
2L 4830469..4830550 871..949 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:07:01 Download gff for BS06620.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4829480..4829979 13..512 99 <- Plus
arm_2L 4830040..4830400 513..870 99 <- Plus
arm_2L 4830469..4830550 871..949 93   Plus

BS06620.5prime Sequence

914 bp (857 high quality bases) assembled on 2005-12-04

> BS06620.5prime
GAAGTTATCAGTCGACATGGGAGACAGTTCAGATGAGGAATATCTGGGCA
CGGACTGGCTGGCTTACAGCGAACGCTCCGACTGGGAAGATGTGCAACCG
CTCGCCCAGGACGACGGTCCCAATCCGGTGGTGTCCATTGCTTACAGTCA
AAAGTTTCGCGAGGTCTTCGACTACATGAGGGCCATAATTGCGCGGGGGG
AGAAGAGCCAACGTGCCTTGGACCTAACCACGGACGCACTGCGTCTGAAT
CCGGCTAACTACACGGTCTGGCAATACAGACGCGACGTTCTGCGCGAACT
AAAGGCTGATCTGTATGCGGAACTGGACTATCTGACCGAGGTGATTGGCC
AGAACTCGAAAAACTACCAGGTTTGGCACCACCGTCGCGTCATCGTCGAG
ATGCTGAACGATCCCAGCAACGAGCTGGAGCTTACTGAGAACGCCCTGGT
CAACGATGGCGATGCCAAGAACTACCACGCCTGGCAACATCGCCAGTGGG
CCATTCGCAGCTTTAATCTCTATGACGATGAACTTAGCTTTGTGGATCGT
CTCATTAGCGAGGATCAGCGCAACAATTCGGCCTGGAACCAGCGCTTCTT
TGTGATCAAGCATTTTGGATTCACGCCGGAGCTGATCCAGCGCGAACTGT
CGTACACGATGAATCGCATTCGCATCATCAAAAACAACGAGAGTGCCTGG
AACTATTTGGTGGGCGTGATGCGGCAGGGCGACAGTGGAAATGCCCTGCT
GAGCAGCTACCCGGATGTCGTGGACTTTGTGGAGGAGCTCTACCAGGCTG
GCAATCGATCGCCCTACCTGCTGGCCTTCCTCATCGATCTCTACCAGGAG
CAGGCGCTCCNACTAAAGGCCAGCGATAGCGATCAACTCGCCCGCAAGGT
GTACGGTCTGTGCG

BS06620.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG2976-PA 996 CG2976-RA 1..898 17..914 4471 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:16:29
Subject Length Description Subject Range Query Range Score Percent Strand
Fnta-RB 1352 CG2976-RB 87..984 17..914 4479 99.9 Plus
Fnta-RA 1185 CG2976-RA 87..984 17..914 4479 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:16:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4829582..4829984 914..512 1989 99.5 Minus
2L 23513712 2L 4830040..4830400 516..156 1805 100 Minus
2L 23513712 2L 4830469..4830607 155..17 695 100 Minus
Blast to na_te.dros performed on 2015-02-02 11:16:25 has no hits.

BS06620.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:57 Download gff for BS06620.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2976-PA 1..898 17..914 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:28:01 Download gff for BS06620.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2976-PA 1..898 17..914 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:37:38 Download gff for BS06620.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2976-RA 83..984 13..914 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:45:42 Download gff for BS06620.5prime
Subject Subject Range Query Range Percent Splice Strand
Fnta-RA 83..984 13..914 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:45:42 Download gff for BS06620.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4829582..4829979 517..914 99 <- Minus
2L 4830040..4830400 156..516 100 <- Minus
2L 4830469..4830609 13..155 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:37:38 Download gff for BS06620.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4829582..4829979 517..914 99 <- Minus
arm_2L 4830040..4830400 156..516 100 <- Minus
arm_2L 4830469..4830609 13..155 98   Minus

BS06620.complete Sequence

1028 bp (1028 high quality bases) assembled on 2005-12-21

GenBank Submission: MN238602

> BS06620.complete
GAAGTTATCAGTCGACATGGGAGACAGTTCAGATGAGGAATATCTGGGCA
CGGACTGGCTGGCTTACAGCGAACGCTCCGACTGGGAAGATGTGCAACCG
CTCGCCCAGGACGACGGTCCCAATCCGGTGGTGTCCATTGCTTACAGTCA
AAAGTTTCGCGAGGTCTTCGACTACATGAGGGCCATAATTGCGCGGGGGG
AGAAGAGCCAACGTGCCTTGGACCTAACCACGGACGCACTGCGTCTGAAT
CCGGCTAACTACACGGTCTGGCAATACAGACGCGACGTTCTGCGCGAACT
AAAGGCTGATCTGTATGCGGAACTGGACTATCTGACCGAGGTGATTGGCC
AGAACTCGAAAAACTACCAGGTTTGGCACCACCGTCGCGTCATCGTCGAG
ATGCTGAACGATCCCAGCAACGAGCTGGAGCTTACTGAGAACGCCCTGGT
CAACGATGGCGATGCCAAGAACTACCACGCCTGGCAACATCGCCAGTGGG
CCATTCGCAGCTTTAATCTCTATGACGATGAACTTAGCTTTGTGGATCGT
CTCATTAGCGAGGATCAGCGCAACAATTCGGCCTGGAACCAGCGCTTCTT
TGTGATCAAGCATTTTGGATTCACGCCGGAGCTGATCCAGCGCGAACTGT
CGTACACGATGAATCGCATTCGCATCATCAAAAACAACGAGAGTGCCTGG
AACTATTTGGTGGGCGTGATGCGGCAGGGCGACAGTGGAAATGCCCTGCT
GAGCAGCTACCCGGATGTCGTGGACTTTGTGGAGGAGCTCTACCAGGCTG
GCAATCGATCGCCCTACCTGCTGGCCTTCCTCATCGATCTCTACCAGGAG
CAGGCGCTCCAACTAAAGGCCAGCGATAGCGATCAACTCGCCCGCAAGGT
GTACGGTCTGTGCGAGGACATGGCCACCAAACACGATGTGATTCGTCGCA
AGTACTGGCAGTATGTGGCCAACCATCTGAAGAACCAGCTAAGCACGGTC
GAACAGAAGTAGAAGCTTTCTAGACCAT

BS06620.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:21:52
Subject Length Description Subject Range Query Range Score Percent Strand
Fnta-RB 996 CG2976-PB 1..996 17..1012 4980 100 Plus
Fnta-RA 996 CG2976-PA 1..996 17..1012 4980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:53
Subject Length Description Subject Range Query Range Score Percent Strand
Fnta-RB 1352 CG2976-RB 87..1086 17..1016 4985 99.9 Plus
Fnta-RA 1185 CG2976-RA 87..1086 17..1016 4985 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4829480..4829984 1016..512 2495 99.6 Minus
2L 23513712 2L 4830040..4830400 516..156 1805 100 Minus
2L 23513712 2L 4830469..4830607 155..17 695 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:21:51 has no hits.

BS06620.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:33 Download gff for BS06620.complete
Subject Subject Range Query Range Percent Splice Strand
CG2976-RA 1..996 17..1012 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:29 Download gff for BS06620.complete
Subject Subject Range Query Range Percent Splice Strand
CG2976-RA 60..1063 13..1016 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:00 Download gff for BS06620.complete
Subject Subject Range Query Range Percent Splice Strand
CG2976-RA 87..1082 17..1012 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:33 Download gff for BS06620.complete
Subject Subject Range Query Range Percent Splice Strand
CG2976-RA 60..1063 13..1016 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:42 Download gff for BS06620.complete
Subject Subject Range Query Range Percent Splice Strand
Fnta-RA 87..1082 17..1012 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:42 Download gff for BS06620.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4829484..4829979 517..1012 100 <- Minus
2L 4830040..4830400 156..516 100 <- Minus
2L 4830469..4830607 17..155 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:00 Download gff for BS06620.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4829484..4829979 517..1012 100 <- Minus
arm_2L 4830040..4830400 156..516 100 <- Minus
arm_2L 4830469..4830607 17..155 100   Minus

BS06620.pep Sequence

Translation from 16 to 1011

> BS06620.pep
MGDSSDEEYLGTDWLAYSERSDWEDVQPLAQDDGPNPVVSIAYSQKFREV
FDYMRAIIARGEKSQRALDLTTDALRLNPANYTVWQYRRDVLRELKADLY
AELDYLTEVIGQNSKNYQVWHHRRVIVEMLNDPSNELELTENALVNDGDA
KNYHAWQHRQWAIRSFNLYDDELSFVDRLISEDQRNNSAWNQRFFVIKHF
GFTPELIQRELSYTMNRIRIIKNNESAWNYLVGVMRQGDSGNALLSSYPD
VVDFVEELYQAGNRSPYLLAFLIDLYQEQALQLKASDSDQLARKVYGLCE
DMATKHDVIRRKYWQYVANHLKNQLSTVEQK*

BS06620.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
Fnta-PB 331 CG2976-PB 1..331 1..331 1745 100 Plus
Fnta-PA 331 CG2976-PA 1..331 1..331 1745 100 Plus