Clone Sequence Records
BS06620.3prime Sequence
949 bp (855 high quality bases) assembled on 2005-12-04
> BS06620.3prime
ATGGTCTAGAAAGCTTCTACTTCTGTTCGACCGTGCTTAGCTGGTTCTTC
AGATGGTTGGCCACATACTGCCAGTACTTGCGACGAATCACATCGTGTTT
GGTGGCCATGTCCTCGCACAGACCGTACACCTTGCGGGCGAGTTGATCGC
TATCGCTGGCCTTTAGTTGGAGCGCCTGCTCCTGGTAGAGATCGATGAGG
AAGGCCAGCAGGTAGGGCGATCGATTGCCAGCCTGGTAGAGCTCCTCCAC
AAAGTCCACGACATCCGGGTAGCTGCTCAGCAGGGCATTTCCACTGTCGC
CCTGCCGCATCACGCCCACCAAATAGTTCCAGGCACTCTCGTTGTTTTTG
ATGATGCGAATGCGATTCATCGTGTACGACAGTTCGCGCTGGATCAGCTC
CGGCGTGAATCCAAAATGCTTGATCACAAAGAAGCGCTGGTTCCAGGCCG
AATTGTTGCGCTGATCCTCGCTAATGAGACGATCCACAAAGCTAAGTTCA
TCGTCATAGAGATTAAAGCTGCGAATGGCCCACTGGCGATGTTGCCAGGC
GTGGTAGTTCTTGGCATCGCCATCGTTGACCAGGGCGTTCTCAGTAAGCT
CCAGCTCGTTGCTGGGATCGTTCAGCATCTCGACGATGACGCGACGGTGG
TGCCAAACCTGGTAGTTTTTCGAGTTCTGGCCAATCACCTCGGTCAGATA
GTCCAGTTCCGCATACAGATCAGCCTTTAGTTCGCGCAGAACGTCGCGTC
TGTATTGCCAGACCGTGTAGTTAGCCGGATTCAGACGCAGTGCGTCCGTG
GTTAGGTCCAAGGCACGTTGGCTCTTCTCCCCCGCGCATTATGGCCCTCA
TGTAGTCGAAACCTCGCGAAACTTTTGACTGTAAGCATGGACACACCGGA
TTGGGGACGTCGTCCTGGGCGAGCGGTGCACATCTTCCCAGTCGGAGCG
BS06620.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2976-PA | 996 | CG2976-RA | 180..996 | 833..17 | 4085 | 100 | Minus |
CG2976-PA | 996 | CG2976-RA | 123..149 | 887..861 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:50:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fnta-RB | 1352 | CG2976-RB | 144..1086 | 949..13 | 4520 | 99 | Minus |
Fnta-RA | 1185 | CG2976-RA | 144..1086 | 949..13 | 4520 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 14:50:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4829480..4829984 | 13..517 | 2495 | 99.6 | Plus |
2L | 23513712 | 2L | 4830040..4830400 | 513..870 | 1655 | 99.2 | Plus |
2L | 23513712 | 2L | 4830469..4830550 | 871..949 | 230 | 93.9 | Plus |
Blast to na_te.dros performed on 2015-01-30 14:50:28 has no hits.
BS06620.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:56 Download gff for
BS06620.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2976-PA | 58..996 | 17..949 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:27:59 Download gff for
BS06620.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2976-PA | 58..996 | 17..949 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:07:01 Download gff for
BS06620.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2976-RA | 144..1086 | 13..949 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:37:33 Download gff for
BS06620.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fnta-RA | 144..1086 | 13..949 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:37:33 Download gff for
BS06620.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4829480..4829979 | 13..512 | 99 | <- | Plus |
2L | 4830040..4830400 | 513..870 | 99 | <- | Plus |
2L | 4830469..4830550 | 871..949 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:07:01 Download gff for
BS06620.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4829480..4829979 | 13..512 | 99 | <- | Plus |
arm_2L | 4830040..4830400 | 513..870 | 99 | <- | Plus |
arm_2L | 4830469..4830550 | 871..949 | 93 | | Plus |
BS06620.5prime Sequence
914 bp (857 high quality bases) assembled on 2005-12-04
> BS06620.5prime
GAAGTTATCAGTCGACATGGGAGACAGTTCAGATGAGGAATATCTGGGCA
CGGACTGGCTGGCTTACAGCGAACGCTCCGACTGGGAAGATGTGCAACCG
CTCGCCCAGGACGACGGTCCCAATCCGGTGGTGTCCATTGCTTACAGTCA
AAAGTTTCGCGAGGTCTTCGACTACATGAGGGCCATAATTGCGCGGGGGG
AGAAGAGCCAACGTGCCTTGGACCTAACCACGGACGCACTGCGTCTGAAT
CCGGCTAACTACACGGTCTGGCAATACAGACGCGACGTTCTGCGCGAACT
AAAGGCTGATCTGTATGCGGAACTGGACTATCTGACCGAGGTGATTGGCC
AGAACTCGAAAAACTACCAGGTTTGGCACCACCGTCGCGTCATCGTCGAG
ATGCTGAACGATCCCAGCAACGAGCTGGAGCTTACTGAGAACGCCCTGGT
CAACGATGGCGATGCCAAGAACTACCACGCCTGGCAACATCGCCAGTGGG
CCATTCGCAGCTTTAATCTCTATGACGATGAACTTAGCTTTGTGGATCGT
CTCATTAGCGAGGATCAGCGCAACAATTCGGCCTGGAACCAGCGCTTCTT
TGTGATCAAGCATTTTGGATTCACGCCGGAGCTGATCCAGCGCGAACTGT
CGTACACGATGAATCGCATTCGCATCATCAAAAACAACGAGAGTGCCTGG
AACTATTTGGTGGGCGTGATGCGGCAGGGCGACAGTGGAAATGCCCTGCT
GAGCAGCTACCCGGATGTCGTGGACTTTGTGGAGGAGCTCTACCAGGCTG
GCAATCGATCGCCCTACCTGCTGGCCTTCCTCATCGATCTCTACCAGGAG
CAGGCGCTCCNACTAAAGGCCAGCGATAGCGATCAACTCGCCCGCAAGGT
GTACGGTCTGTGCG
BS06620.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2976-PA | 996 | CG2976-RA | 1..898 | 17..914 | 4471 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:16:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fnta-RB | 1352 | CG2976-RB | 87..984 | 17..914 | 4479 | 99.9 | Plus |
Fnta-RA | 1185 | CG2976-RA | 87..984 | 17..914 | 4479 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:16:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4829582..4829984 | 914..512 | 1989 | 99.5 | Minus |
2L | 23513712 | 2L | 4830040..4830400 | 516..156 | 1805 | 100 | Minus |
2L | 23513712 | 2L | 4830469..4830607 | 155..17 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 11:16:25 has no hits.
BS06620.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:57 Download gff for
BS06620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2976-PA | 1..898 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:28:01 Download gff for
BS06620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2976-PA | 1..898 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:37:38 Download gff for
BS06620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2976-RA | 83..984 | 13..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:45:42 Download gff for
BS06620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fnta-RA | 83..984 | 13..914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:45:42 Download gff for
BS06620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4829582..4829979 | 517..914 | 99 | <- | Minus |
2L | 4830040..4830400 | 156..516 | 100 | <- | Minus |
2L | 4830469..4830609 | 13..155 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:37:38 Download gff for
BS06620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4829582..4829979 | 517..914 | 99 | <- | Minus |
arm_2L | 4830040..4830400 | 156..516 | 100 | <- | Minus |
arm_2L | 4830469..4830609 | 13..155 | 98 | | Minus |
BS06620.complete Sequence
1028 bp (1028 high quality bases) assembled on 2005-12-21
GenBank Submission: MN238602
> BS06620.complete
GAAGTTATCAGTCGACATGGGAGACAGTTCAGATGAGGAATATCTGGGCA
CGGACTGGCTGGCTTACAGCGAACGCTCCGACTGGGAAGATGTGCAACCG
CTCGCCCAGGACGACGGTCCCAATCCGGTGGTGTCCATTGCTTACAGTCA
AAAGTTTCGCGAGGTCTTCGACTACATGAGGGCCATAATTGCGCGGGGGG
AGAAGAGCCAACGTGCCTTGGACCTAACCACGGACGCACTGCGTCTGAAT
CCGGCTAACTACACGGTCTGGCAATACAGACGCGACGTTCTGCGCGAACT
AAAGGCTGATCTGTATGCGGAACTGGACTATCTGACCGAGGTGATTGGCC
AGAACTCGAAAAACTACCAGGTTTGGCACCACCGTCGCGTCATCGTCGAG
ATGCTGAACGATCCCAGCAACGAGCTGGAGCTTACTGAGAACGCCCTGGT
CAACGATGGCGATGCCAAGAACTACCACGCCTGGCAACATCGCCAGTGGG
CCATTCGCAGCTTTAATCTCTATGACGATGAACTTAGCTTTGTGGATCGT
CTCATTAGCGAGGATCAGCGCAACAATTCGGCCTGGAACCAGCGCTTCTT
TGTGATCAAGCATTTTGGATTCACGCCGGAGCTGATCCAGCGCGAACTGT
CGTACACGATGAATCGCATTCGCATCATCAAAAACAACGAGAGTGCCTGG
AACTATTTGGTGGGCGTGATGCGGCAGGGCGACAGTGGAAATGCCCTGCT
GAGCAGCTACCCGGATGTCGTGGACTTTGTGGAGGAGCTCTACCAGGCTG
GCAATCGATCGCCCTACCTGCTGGCCTTCCTCATCGATCTCTACCAGGAG
CAGGCGCTCCAACTAAAGGCCAGCGATAGCGATCAACTCGCCCGCAAGGT
GTACGGTCTGTGCGAGGACATGGCCACCAAACACGATGTGATTCGTCGCA
AGTACTGGCAGTATGTGGCCAACCATCTGAAGAACCAGCTAAGCACGGTC
GAACAGAAGTAGAAGCTTTCTAGACCAT
BS06620.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:21:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fnta-RB | 996 | CG2976-PB | 1..996 | 17..1012 | 4980 | 100 | Plus |
Fnta-RA | 996 | CG2976-PA | 1..996 | 17..1012 | 4980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fnta-RB | 1352 | CG2976-RB | 87..1086 | 17..1016 | 4985 | 99.9 | Plus |
Fnta-RA | 1185 | CG2976-RA | 87..1086 | 17..1016 | 4985 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4829480..4829984 | 1016..512 | 2495 | 99.6 | Minus |
2L | 23513712 | 2L | 4830040..4830400 | 516..156 | 1805 | 100 | Minus |
2L | 23513712 | 2L | 4830469..4830607 | 155..17 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:21:51 has no hits.
BS06620.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:33 Download gff for
BS06620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2976-RA | 1..996 | 17..1012 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:29 Download gff for
BS06620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2976-RA | 60..1063 | 13..1016 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:00 Download gff for
BS06620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2976-RA | 87..1082 | 17..1012 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:33 Download gff for
BS06620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2976-RA | 60..1063 | 13..1016 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:42 Download gff for
BS06620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fnta-RA | 87..1082 | 17..1012 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:42 Download gff for
BS06620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4829484..4829979 | 517..1012 | 100 | <- | Minus |
2L | 4830040..4830400 | 156..516 | 100 | <- | Minus |
2L | 4830469..4830607 | 17..155 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:00 Download gff for
BS06620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4829484..4829979 | 517..1012 | 100 | <- | Minus |
arm_2L | 4830040..4830400 | 156..516 | 100 | <- | Minus |
arm_2L | 4830469..4830607 | 17..155 | 100 | | Minus |
BS06620.pep Sequence
Translation from 16 to 1011
> BS06620.pep
MGDSSDEEYLGTDWLAYSERSDWEDVQPLAQDDGPNPVVSIAYSQKFREV
FDYMRAIIARGEKSQRALDLTTDALRLNPANYTVWQYRRDVLRELKADLY
AELDYLTEVIGQNSKNYQVWHHRRVIVEMLNDPSNELELTENALVNDGDA
KNYHAWQHRQWAIRSFNLYDDELSFVDRLISEDQRNNSAWNQRFFVIKHF
GFTPELIQRELSYTMNRIRIIKNNESAWNYLVGVMRQGDSGNALLSSYPD
VVDFVEELYQAGNRSPYLLAFLIDLYQEQALQLKASDSDQLARKVYGLCE
DMATKHDVIRRKYWQYVANHLKNQLSTVEQK*
BS06620.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:09:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fnta-PB | 331 | CG2976-PB | 1..331 | 1..331 | 1745 | 100 | Plus |
Fnta-PA | 331 | CG2976-PA | 1..331 | 1..331 | 1745 | 100 | Plus |