Clone Sequence Records
BS06621.3prime Sequence
840 bp (839 high quality bases) assembled on 2005-12-04
> BS06621.3prime
ATGGTCTAGAAAGCTTCTAATTTGGTAGGCACCTCGTCTGAAAGTACTTC
TCATCGACGAAGCGACAGAACTCGACCAAGTGCTGGAACTTCTGCACCGT
TTGGGCCAGCGCCATGTTCGGCAGCGTGGTGGTCAGAATGCTGAAGAGGT
GGCCGAAGGCGATGGCGTCCAGTTCGCAGGGCTGATCGCCGTAGAAGAAT
GGCGTTTCCGGCGACTCTTTCAGCTTGTATTCGAGCGTCTCACAGCACTT
GGCCACCTTGTCAATGACGCTATCGATGTCCAGGTCGTCCCACTGATAGA
CCTTCAACAGACGCAGCGCGTTCCGCCGCTTTCCATAGTTCTGCATGTGA
TTGAGGGGCCAGGGAAAAACGACTCCGTTCCTGGGCGCTGTGACCTCTTT
GTAGACGCGTTCGTTCTTGAAGCTAATGTACAGCTCAGCCATGGTGAAGA
TGTTCTCCACCAGCGACACATAGGTGCGCATGTCGGCCTTCTCGTCCTCG
TCCTGCCAGCTGCCAATGGCCAGTTCCTTCTGCTCCACAAAGTTCACGAT
CGGCTCGAATTCGGCAAAGATGAATGCTCCTGCGCGGATGAAGGGCAACT
TGGTCATCCTGCCGCCCGGCGACATGTGCTCCGCGTTGGCACAGGACCGA
ATCAAAAAGGGGAGGTTGCACATCTTCAGGTAAGCCTTCACAGCAAGGCA
ACTGGCGTTTTCCGGCAGTAGGATCTGTTCCGCTTCATACGGCTGGTAGA
GGGTGGCGTCTTCGGGCCAGGGCTCGGCGGACAATTTGTCGGCCGTTATT
AGCTGGCTCAGGTACTGGGATGTCATGTCGACTGATAACT
BS06621.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8004-PA | 810 | CG8004-RA | 1..810 | 826..17 | 4050 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:50:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8004-RA | 1242 | CG8004-RA | 72..881 | 826..17 | 4050 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 14:50:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19927555..19928283 | 17..745 | 3645 | 100 | Plus |
3L | 28110227 | 3L | 19928354..19928437 | 743..826 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 14:50:15 has no hits.
BS06621.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:58 Download gff for
BS06621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8004-PA | 1..810 | 17..826 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:28:02 Download gff for
BS06621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8004-PA | 1..810 | 17..826 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:06:59 Download gff for
BS06621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8004-RA | 72..883 | 11..826 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:37:31 Download gff for
BS06621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8004-RA | 72..883 | 11..826 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:37:31 Download gff for
BS06621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19927553..19928280 | 11..742 | 99 | <- | Plus |
3L | 19928354..19928437 | 743..826 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:06:59 Download gff for
BS06621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19920653..19921380 | 11..742 | 99 | <- | Plus |
arm_3L | 19921454..19921537 | 743..826 | 100 | | Plus |
BS06621.5prime Sequence
840 bp (737 high quality bases) assembled on 2005-12-04
> BS06621.5prime
GAAGTTATCAGTCGACATGACATCCCAGTACCTGAGCCAGCTAATAACGG
CCGACAAATTGTCCGCCGAGCCCTGGCCCGAAGACGCCACCCTCTACCAG
CCGTATGAAGCGGAACAGATCCTACTGCCGGAAAACGCCAGTTGCCTTGC
TGTGAAGGCTTACCTGAAGATGTGCAACCTCCCCTTTTTGATTCGGTCCT
GTGCCAACGCGGAGCACATGTCGCCGGGCGGCAGGATGACCAAGTTGCCC
TTCATCCGCGCAGGAGCATTCATCTTTGCCGAATTCGAGCCGATCGTGAA
CTTTGTGGAGCAGAAGGAACTGGCCATTGGCAGCTGGCAGGACGAGGACG
AGAAGGCCGACATGCGCACCTATGTGTCGCTGGTGGAGAACATCTTCACC
ATGGCTGAGCTGTACATTAGCTTCAAGAACGAACGCGTCTACAAAGAGGT
CACAGCGCCCAGGAACGGAGTCGTTTTTCCCTGGCCCCTCAATCACATGC
AGAACTATGGAAAGCGGCGGAACGCGCTGCGTCTGTTGAAGGTCTATCAG
TGGGACGACCTGGACATCGATAGCGTCATTGACAAGGTGGCCAAGTGCTG
TGAGACGCTCGAATACAAGCTGAAAGAGTCGCCGGAAACGCCATTCTTCT
ACGGCGATCAGCCCTGCGAACTGGACGCCATCGCCTTCGGCCACCTCTTC
AGCATTCTGACCACCACGCTGCCGAACATGGCGCTGGCCCAAACGGTGCA
GAAGTTCCAGCACTTGGTCGAGTTCTGTCGCTTCGTCGATGAGAAGTACT
TTCAGACGAGGTGCCTACCAAATTAGAAGCTTTCTAGACC
BS06621.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8004-PA | 810 | CG8004-RA | 1..810 | 17..826 | 4050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:40:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8004-RA | 1242 | CG8004-RA | 72..881 | 17..826 | 4050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:40:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19927555..19928283 | 826..98 | 3645 | 100 | Minus |
3L | 28110227 | 3L | 19928354..19928437 | 100..17 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 22:40:27 has no hits.
BS06621.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:59 Download gff for
BS06621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8004-PA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:28:03 Download gff for
BS06621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8004-PA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:27:10 Download gff for
BS06621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8004-RA | 72..883 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:47:24 Download gff for
BS06621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8004-RA | 72..883 | 17..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:47:24 Download gff for
BS06621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19927553..19928280 | 101..832 | 99 | <- | Minus |
3L | 19928354..19928437 | 17..100 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:27:10 Download gff for
BS06621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19921454..19921537 | 17..100 | 100 | | Minus |
arm_3L | 19920653..19921380 | 101..832 | 99 | <- | Minus |
BS06621.complete Sequence
842 bp (842 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635566
> BS06621.complete
GAAGTTATCAGTCGACATGACATCCCAGTACCTGAGCCAGCTAATAACGG
CCGACAAATTGTCCGCCGAGCCCTGGCCCGAAGACGCCACCCTCTACCAG
CCGTATGAAGCGGAACAGATCCTACTGCCGGAAAACGCCAGTTGCCTTGC
TGTGAAGGCTTACCTGAAGATGTGCAACCTCCCCTTTTTGATTCGGTCCT
GTGCCAACGCGGAGCACATGTCGCCGGGCGGCAGGATGACCAAGTTGCCC
TTCATCCGCGCAGGAGCATTCATCTTTGCCGAATTCGAGCCGATCGTGAA
CTTTGTGGAGCAGAAGGAACTGGCCATTGGCAGCTGGCAGGACGAGGACG
AGAAGGCCGACATGCGCACCTATGTGTCGCTGGTGGAGAACATCTTCACC
ATGGCTGAGCTGTACATTAGCTTCAAGAACGAACGCGTCTACAAAGAGGT
CACAGCGCCCAGGAACGGAGTCGTTTTTCCCTGGCCCCTCAATCACATGC
AGAACTATGGAAAGCGGCGGAACGCGCTGCGTCTGTTGAAGGTCTATCAG
TGGGACGACCTGGACATCGATAGCGTCATTGACAAGGTGGCCAAGTGCTG
TGAGACGCTCGAATACAAGCTGAAAGAGTCGCCGGAAACGCCATTCTTCT
ACGGCGATCAGCCCTGCGAACTGGACGCCATCGCCTTCGGCCACCTCTTC
AGCATTCTGACCACCACGCTGCCGAACATGGCGCTGGCCCAAACGGTGCA
GAAGTTCCAGCACTTGGTCGAGTTCTGTCGCTTCGTCGATGAGAAGTACT
TTCAGACGAGGTGCCTACCAAATTAGAAGCTTTCTAGACCAT
BS06621.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:39:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8004-RA | 810 | CG8004-PA | 1..810 | 17..826 | 4050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:39:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8004-RA | 1242 | CG8004-RA | 72..881 | 17..826 | 4050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:39:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19927555..19928283 | 826..98 | 3645 | 100 | Minus |
3L | 28110227 | 3L | 19928354..19928437 | 100..17 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:39:41 has no hits.
BS06621.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:34 Download gff for
BS06621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8004-RA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:31 Download gff for
BS06621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8004-RA | 50..861 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:50 Download gff for
BS06621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8004-RA | 72..881 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:34 Download gff for
BS06621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8004-RA | 50..861 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:13 Download gff for
BS06621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8004-RA | 72..881 | 17..826 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:13 Download gff for
BS06621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19927555..19928280 | 101..826 | 100 | <- | Minus |
3L | 19928354..19928437 | 17..100 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:50 Download gff for
BS06621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19920655..19921380 | 101..826 | 100 | <- | Minus |
arm_3L | 19921454..19921537 | 17..100 | 100 | | Minus |
BS06621.pep Sequence
Translation from 16 to 825
> BS06621.pep
MTSQYLSQLITADKLSAEPWPEDATLYQPYEAEQILLPENASCLAVKAYL
KMCNLPFLIRSCANAEHMSPGGRMTKLPFIRAGAFIFAEFEPIVNFVEQK
ELAIGSWQDEDEKADMRTYVSLVENIFTMAELYISFKNERVYKEVTAPRN
GVVFPWPLNHMQNYGKRRNALRLLKVYQWDDLDIDSVIDKVAKCCETLEY
KLKESPETPFFYGDQPCELDAIAFGHLFSILTTTLPNMALAQTVQKFQHL
VEFCRFVDEKYFQTRCLPN*
BS06621.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8004-PA | 269 | CG8004-PA | 1..269 | 1..269 | 1429 | 100 | Plus |
CG5662-PB | 292 | CG5662-PB | 11..275 | 6..267 | 622 | 46.8 | Plus |
CG5662-PA | 292 | CG5662-PA | 11..275 | 6..267 | 622 | 46.8 | Plus |