Clone BS06621 Report

Search the DGRC for BS06621

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:66
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptCG8004-RA
Protein status:BS06621.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06621.3prime Sequence

840 bp (839 high quality bases) assembled on 2005-12-04

> BS06621.3prime
ATGGTCTAGAAAGCTTCTAATTTGGTAGGCACCTCGTCTGAAAGTACTTC
TCATCGACGAAGCGACAGAACTCGACCAAGTGCTGGAACTTCTGCACCGT
TTGGGCCAGCGCCATGTTCGGCAGCGTGGTGGTCAGAATGCTGAAGAGGT
GGCCGAAGGCGATGGCGTCCAGTTCGCAGGGCTGATCGCCGTAGAAGAAT
GGCGTTTCCGGCGACTCTTTCAGCTTGTATTCGAGCGTCTCACAGCACTT
GGCCACCTTGTCAATGACGCTATCGATGTCCAGGTCGTCCCACTGATAGA
CCTTCAACAGACGCAGCGCGTTCCGCCGCTTTCCATAGTTCTGCATGTGA
TTGAGGGGCCAGGGAAAAACGACTCCGTTCCTGGGCGCTGTGACCTCTTT
GTAGACGCGTTCGTTCTTGAAGCTAATGTACAGCTCAGCCATGGTGAAGA
TGTTCTCCACCAGCGACACATAGGTGCGCATGTCGGCCTTCTCGTCCTCG
TCCTGCCAGCTGCCAATGGCCAGTTCCTTCTGCTCCACAAAGTTCACGAT
CGGCTCGAATTCGGCAAAGATGAATGCTCCTGCGCGGATGAAGGGCAACT
TGGTCATCCTGCCGCCCGGCGACATGTGCTCCGCGTTGGCACAGGACCGA
ATCAAAAAGGGGAGGTTGCACATCTTCAGGTAAGCCTTCACAGCAAGGCA
ACTGGCGTTTTCCGGCAGTAGGATCTGTTCCGCTTCATACGGCTGGTAGA
GGGTGGCGTCTTCGGGCCAGGGCTCGGCGGACAATTTGTCGGCCGTTATT
AGCTGGCTCAGGTACTGGGATGTCATGTCGACTGATAACT

BS06621.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG8004-PA 810 CG8004-RA 1..810 826..17 4050 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG8004-RA 1242 CG8004-RA 72..881 826..17 4050 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 14:50:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19927555..19928283 17..745 3645 100 Plus
3L 28110227 3L 19928354..19928437 743..826 420 100 Plus
Blast to na_te.dros performed on 2015-01-30 14:50:15 has no hits.

BS06621.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:58 Download gff for BS06621.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8004-PA 1..810 17..826 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:28:02 Download gff for BS06621.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8004-PA 1..810 17..826 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:06:59 Download gff for BS06621.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8004-RA 72..883 11..826 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:37:31 Download gff for BS06621.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8004-RA 72..883 11..826 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:37:31 Download gff for BS06621.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19927553..19928280 11..742 99 <- Plus
3L 19928354..19928437 743..826 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:06:59 Download gff for BS06621.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19920653..19921380 11..742 99 <- Plus
arm_3L 19921454..19921537 743..826 100   Plus

BS06621.5prime Sequence

840 bp (737 high quality bases) assembled on 2005-12-04

> BS06621.5prime
GAAGTTATCAGTCGACATGACATCCCAGTACCTGAGCCAGCTAATAACGG
CCGACAAATTGTCCGCCGAGCCCTGGCCCGAAGACGCCACCCTCTACCAG
CCGTATGAAGCGGAACAGATCCTACTGCCGGAAAACGCCAGTTGCCTTGC
TGTGAAGGCTTACCTGAAGATGTGCAACCTCCCCTTTTTGATTCGGTCCT
GTGCCAACGCGGAGCACATGTCGCCGGGCGGCAGGATGACCAAGTTGCCC
TTCATCCGCGCAGGAGCATTCATCTTTGCCGAATTCGAGCCGATCGTGAA
CTTTGTGGAGCAGAAGGAACTGGCCATTGGCAGCTGGCAGGACGAGGACG
AGAAGGCCGACATGCGCACCTATGTGTCGCTGGTGGAGAACATCTTCACC
ATGGCTGAGCTGTACATTAGCTTCAAGAACGAACGCGTCTACAAAGAGGT
CACAGCGCCCAGGAACGGAGTCGTTTTTCCCTGGCCCCTCAATCACATGC
AGAACTATGGAAAGCGGCGGAACGCGCTGCGTCTGTTGAAGGTCTATCAG
TGGGACGACCTGGACATCGATAGCGTCATTGACAAGGTGGCCAAGTGCTG
TGAGACGCTCGAATACAAGCTGAAAGAGTCGCCGGAAACGCCATTCTTCT
ACGGCGATCAGCCCTGCGAACTGGACGCCATCGCCTTCGGCCACCTCTTC
AGCATTCTGACCACCACGCTGCCGAACATGGCGCTGGCCCAAACGGTGCA
GAAGTTCCAGCACTTGGTCGAGTTCTGTCGCTTCGTCGATGAGAAGTACT
TTCAGACGAGGTGCCTACCAAATTAGAAGCTTTCTAGACC

BS06621.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG8004-PA 810 CG8004-RA 1..810 17..826 4050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG8004-RA 1242 CG8004-RA 72..881 17..826 4050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:40:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19927555..19928283 826..98 3645 100 Minus
3L 28110227 3L 19928354..19928437 100..17 420 100 Minus
Blast to na_te.dros performed on 2015-02-09 22:40:27 has no hits.

BS06621.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:46:59 Download gff for BS06621.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8004-PA 1..810 17..826 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:28:03 Download gff for BS06621.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8004-PA 1..810 17..826 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:27:10 Download gff for BS06621.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8004-RA 72..883 17..832 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:47:24 Download gff for BS06621.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8004-RA 72..883 17..832 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:47:24 Download gff for BS06621.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19927553..19928280 101..832 99 <- Minus
3L 19928354..19928437 17..100 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:27:10 Download gff for BS06621.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19921454..19921537 17..100 100   Minus
arm_3L 19920653..19921380 101..832 99 <- Minus

BS06621.complete Sequence

842 bp (842 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635566

> BS06621.complete
GAAGTTATCAGTCGACATGACATCCCAGTACCTGAGCCAGCTAATAACGG
CCGACAAATTGTCCGCCGAGCCCTGGCCCGAAGACGCCACCCTCTACCAG
CCGTATGAAGCGGAACAGATCCTACTGCCGGAAAACGCCAGTTGCCTTGC
TGTGAAGGCTTACCTGAAGATGTGCAACCTCCCCTTTTTGATTCGGTCCT
GTGCCAACGCGGAGCACATGTCGCCGGGCGGCAGGATGACCAAGTTGCCC
TTCATCCGCGCAGGAGCATTCATCTTTGCCGAATTCGAGCCGATCGTGAA
CTTTGTGGAGCAGAAGGAACTGGCCATTGGCAGCTGGCAGGACGAGGACG
AGAAGGCCGACATGCGCACCTATGTGTCGCTGGTGGAGAACATCTTCACC
ATGGCTGAGCTGTACATTAGCTTCAAGAACGAACGCGTCTACAAAGAGGT
CACAGCGCCCAGGAACGGAGTCGTTTTTCCCTGGCCCCTCAATCACATGC
AGAACTATGGAAAGCGGCGGAACGCGCTGCGTCTGTTGAAGGTCTATCAG
TGGGACGACCTGGACATCGATAGCGTCATTGACAAGGTGGCCAAGTGCTG
TGAGACGCTCGAATACAAGCTGAAAGAGTCGCCGGAAACGCCATTCTTCT
ACGGCGATCAGCCCTGCGAACTGGACGCCATCGCCTTCGGCCACCTCTTC
AGCATTCTGACCACCACGCTGCCGAACATGGCGCTGGCCCAAACGGTGCA
GAAGTTCCAGCACTTGGTCGAGTTCTGTCGCTTCGTCGATGAGAAGTACT
TTCAGACGAGGTGCCTACCAAATTAGAAGCTTTCTAGACCAT

BS06621.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:39:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG8004-RA 810 CG8004-PA 1..810 17..826 4050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:39:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG8004-RA 1242 CG8004-RA 72..881 17..826 4050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:39:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19927555..19928283 826..98 3645 100 Minus
3L 28110227 3L 19928354..19928437 100..17 420 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:39:41 has no hits.

BS06621.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:34 Download gff for BS06621.complete
Subject Subject Range Query Range Percent Splice Strand
CG8004-RA 1..810 17..826 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:31 Download gff for BS06621.complete
Subject Subject Range Query Range Percent Splice Strand
CG8004-RA 50..861 17..832 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:50 Download gff for BS06621.complete
Subject Subject Range Query Range Percent Splice Strand
CG8004-RA 72..881 17..826 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:34 Download gff for BS06621.complete
Subject Subject Range Query Range Percent Splice Strand
CG8004-RA 50..861 17..832 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:13 Download gff for BS06621.complete
Subject Subject Range Query Range Percent Splice Strand
CG8004-RA 72..881 17..826 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:13 Download gff for BS06621.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19927555..19928280 101..826 100 <- Minus
3L 19928354..19928437 17..100 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:50 Download gff for BS06621.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19920655..19921380 101..826 100 <- Minus
arm_3L 19921454..19921537 17..100 100   Minus

BS06621.pep Sequence

Translation from 16 to 825

> BS06621.pep
MTSQYLSQLITADKLSAEPWPEDATLYQPYEAEQILLPENASCLAVKAYL
KMCNLPFLIRSCANAEHMSPGGRMTKLPFIRAGAFIFAEFEPIVNFVEQK
ELAIGSWQDEDEKADMRTYVSLVENIFTMAELYISFKNERVYKEVTAPRN
GVVFPWPLNHMQNYGKRRNALRLLKVYQWDDLDIDSVIDKVAKCCETLEY
KLKESPETPFFYGDQPCELDAIAFGHLFSILTTTLPNMALAQTVQKFQHL
VEFCRFVDEKYFQTRCLPN*

BS06621.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG8004-PA 269 CG8004-PA 1..269 1..269 1429 100 Plus
CG5662-PB 292 CG5662-PB 11..275 6..267 622 46.8 Plus
CG5662-PA 292 CG5662-PA 11..275 6..267 622 46.8 Plus