Clone Sequence Records
BS06626.3prime Sequence
937 bp (855 high quality bases) assembled on 2005-12-04
> BS06626.3prime
ATGGTCTAGAAAGCTTTTATTTGAGCGACAGCTTTTTTTGCTCGATTTCC
AATAGTTTCTTTTTCAGTTCTATTTTCTCAGCCATTAACTGTTCAATTGC
CAAGTGATGTCGCTTGTCCTCGTACAGCTTCTGCTTGTACAGGACAAAAA
ATTCATTGAGTGCAAGTTGAACGCTGTTGGCGGTATCGTGCACCATTTCT
AGGTTATTGCTAATCTTGTCAAGCAGTGTGGTCTCCTCCTCCGCCAGTCG
ACTGCTGGCCAATGCGGCCCGTTTGTTAGATTGCAGGTAAAGCGGGTCAA
TGTCCGTTTTGTTCTCCTCCGGTTCGTAAACGTACTCGGCGGAAGTCTGA
AGGGCGCCACCATCTTCTTCCGGGACCACATCCTCTACTTCGTCCACATC
AAATTCCGTGGTGGAATTCTCATGCATTTCATCGTCGGAGACCTTCATAA
TAATCTGACTTACATCCTCGTTTAATCTACACAGTGTGGCTATTGTTTCC
TCCGACGAAGTAAGACTGGTGCCAAAAGGCATGTTCTGCATCTCATTCTT
TTCCACCTTTCTCAGGATAAACCTCTTCCAGTCCTTTAAGGCCCTTCTCC
AGGTGGCTATATCTTTTCGCGGCGGACCGTGGCTATTAAGTTCGGATGAC
AGTTCCTCCCACAGCGACTCCAGATTGCCCCGTGTTTCCCACGTCGGATT
CTGAAGCAGACGCGGATGTTTCTTCACGAATTCTAACAATATCAGCTCTT
GCGTTGAGTTGCGCGGCTTGGCTTTGTTCCGGTCGATGGCGATGGTGGTC
TGCGGCTGGAATTTGTACTTGGAGTTCCGGTTGAGTCCCGATGTGGGGTG
CATCCTGTTCATGTGCTTGCTTAGATTCGTGGTGGTCGTCTTGTAAGAGA
GCTTCGCCTTGCAGATATACACACCGCAAACGTGTCC
BS06626.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3995-PA | 969 | CG3995-RA | 68..969 | 918..17 | 4510 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:50:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3995-RA | 1185 | CG3995-RA | 123..1043 | 936..17 | 4580 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 14:49:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17042038..17042614 | 17..593 | 2885 | 100 | Plus |
3R | 32079331 | 3R | 17042669..17043014 | 592..936 | 1680 | 99.7 | Plus |
Blast to na_te.dros performed 2015-01-30 14:50:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 3635..3676 | 74..33 | 111 | 73.8 | Minus |
BS06626.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:47:09 Download gff for
BS06626.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3995-PA | 48..969 | 17..937 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:28:15 Download gff for
BS06626.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3995-PA | 48..969 | 17..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:06:56 Download gff for
BS06626.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3995-RA | 122..1043 | 17..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:37:30 Download gff for
BS06626.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3995-RA | 122..1043 | 17..937 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:37:30 Download gff for
BS06626.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17042038..17042613 | 17..592 | 100 | <- | Plus |
3R | 17042670..17043014 | 593..937 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:06:56 Download gff for
BS06626.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12867760..12868335 | 17..592 | 100 | <- | Plus |
arm_3R | 12868392..12868736 | 593..937 | 99 | | Plus |
BS06626.5prime Sequence
900 bp (848 high quality bases) assembled on 2005-12-04
> BS06626.5prime
GAAGTTATCAGTCGACATGAAGCGGAAAACGAGCGAGATCTGGTGCTTTT
TCCGGGCGGTGGACGACACGTTTGCGGTGTGTAATATCTGCAAGGCGAAG
CTCTCTTACAAGACGACCACCACGAATCTAAGCAAGCACATGAACAGGAT
GCACCCCACATCGGGACTCAACCGGAACTCCAAGTACAAATTCCAGCCGC
AGACCACCATCGCCATCGACCGGAACAAAGCCAAGCCGCGCAACTCAACG
CAAGAGCTGATATTGTTAGAATTCGTGAAGAAACATCCGCGTCTGCTTCA
GAATCCGACGTGGGAAACACGGGGCAATCTGGAGTCGCTGTGGGAGGAAC
TGTCATCCGAACTTAATAGCCACGGTCCGCCGCGAAAAGATATAGCCACC
TGGAGAAGGGCCTTAAAGGACTGGAAGAGGTTTATCCTGAGAAAGGTGGA
AAAGAATGAGATGCAGAACATGCCTTTTGGCACCAGTCTTACTTCGTCGG
AGGAAACAATAGCCACACTGTGTAGATTAAACGAGGATGTAAGTCAGATT
ATTATGAAGGTCTCCGACGATGAAATGCATGAGAATTCCACCACGGAATT
TGATGTGGACGAAGTAGAGGATGTGGTCCCGGAAGAAGATGGTGGCGCCC
TTCAGACTTCCGCCGAGTACGTTTACGAACCGGAGGAGAACAAAACGGAC
ATTGACCCGCTTTACCTGCAATCTAACAAACGGGCCGCATTGGCCAGCAG
TCGACTGGCGGAGGAGGAGACCACACTGCTTGACAAGATTAGCAATAACC
TAGAAATGGTGCACGATACCGCCAACAGCGTTCAACTTGCACTCAATGAA
TTTTTTGTCCTGTACAAGCAGAAGCTGTACGAGGACAAGCGACATCACTT
BS06626.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3995-PA | 969 | CG3995-RA | 1..884 | 17..900 | 4420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:32:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3995-RA | 1185 | CG3995-RA | 68..958 | 10..900 | 4440 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:32:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17042123..17042614 | 900..409 | 2460 | 100 | Minus |
3R | 32079331 | 3R | 17042669..17043069 | 410..10 | 1990 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:32:06 has no hits.
BS06626.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:47:10 Download gff for
BS06626.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3995-PA | 1..884 | 17..900 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:28:16 Download gff for
BS06626.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3995-PA | 1..884 | 17..900 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:22:40 Download gff for
BS06626.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3995-RA | 63..958 | 2..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:26:30 Download gff for
BS06626.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3995-RA | 63..958 | 2..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:26:30 Download gff for
BS06626.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17042123..17042613 | 410..900 | 100 | <- | Minus |
3R | 17042670..17043074 | 2..409 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:22:40 Download gff for
BS06626.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12867845..12868335 | 410..900 | 100 | <- | Minus |
arm_3R | 12868392..12868796 | 2..409 | 98 | | Minus |
BS06626.complete Sequence
1001 bp (1001 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635567
> BS06626.complete
GAAGTTATCAGTCGACATGAAGCGGAAAACGAGCGAGATCTGGTGCTTTT
TCCGGGCGGTGGACGACACGTTTGCGGTGTGTAATATCTGCAAGGCGAAG
CTCTCTTACAAGACGACCACCACGAATCTAAGCAAGCACATGAACAGGAT
GCACCCCACATCGGGACTCAACCGGAACTCCAAGTACAAATTCCAGCCGC
AGACCACCATCGCCATCGACCGGAACAAAGCCAAGCCGCGCAACTCAACG
CAAGAGCTGATATTGTTAGAATTCGTGAAGAAACATCCGCGTCTGCTTCA
GAATCCGACGTGGGAAACACGGGGCAATCTGGAGTCGCTGTGGGAGGAAC
TGTCATCCGAACTTAATAGCCACGGTCCGCCGCGAAAAGATATAGCCACC
TGGAGAAGGGCCTTAAAGGACTGGAAGAGGTTTATCCTGAGAAAGGTGGA
AAAGAATGAGATGCAGAACATGCCTTTTGGCACCAGTCTTACTTCGTCGG
AGGAAACAATAGCCACACTGTGTAGATTAAACGAGGATGTAAGTCAGATT
ATTATGAAGGTCTCCGACGATGAAATGCATGAGAATTCCACCACGGAATT
TGATGTGGACGAAGTAGAGGATGTGGTCCCGGAAGAAGATGGTGGCGCCC
TTCAGACTTCCGCCGAGTACGTTTACGAACCGGAGGAGAACAAAACGGAC
ATTGACCCGCTTTACCTGCAATCTAACAAACGGGCCGCATTGGCCAGCAG
TCGACTGGCGGAGGAGGAGACCACACTGCTTGACAAGATTAGCAATAACC
TAGAAATGGTGCACGATACCGCCAACAGCGTTCAACTTGCACTCAATGAA
TTTTTTGTCCTGTACAAGCAGAAGCTGTACGAGGACAAGCGACATCACTT
GGCAATTGAACAGTTAATGGCTGAGAAAATAGAACTGAAAAAGAAACTAT
TGGAAATCGAGCAAAAAAAGCTGTCGCTCAAATAAAAGCTTTCTAGACCA
T
BS06626.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:19:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3995-RA | 969 | CG3995-PA | 1..969 | 17..985 | 4845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:19:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3995-RA | 1185 | CG3995-RA | 68..1043 | 10..985 | 4865 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:19:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17042038..17042614 | 985..409 | 2885 | 100 | Minus |
3R | 32079331 | 3R | 17042669..17043069 | 410..10 | 1990 | 99.8 | Minus |
Blast to na_te.dros performed 2014-11-27 20:19:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 3635..3676 | 928..969 | 111 | 73.8 | Plus |
BS06626.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:36 Download gff for
BS06626.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3995-RA | 1..969 | 17..985 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:33 Download gff for
BS06626.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3995-RA | 31..1011 | 2..985 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:30 Download gff for
BS06626.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3995-RA | 75..1041 | 17..983 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:36 Download gff for
BS06626.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3995-RA | 31..1011 | 2..985 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:26 Download gff for
BS06626.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3995-RA | 75..1041 | 17..983 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:26 Download gff for
BS06626.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17042040..17042613 | 410..983 | 100 | <- | Minus |
3R | 17042670..17043062 | 17..409 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:30 Download gff for
BS06626.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12867762..12868335 | 410..983 | 100 | <- | Minus |
arm_3R | 12868392..12868784 | 17..409 | 100 | | Minus |
BS06626.pep Sequence
Translation from 16 to 984
> BS06626.pep
MKRKTSEIWCFFRAVDDTFAVCNICKAKLSYKTTTTNLSKHMNRMHPTSG
LNRNSKYKFQPQTTIAIDRNKAKPRNSTQELILLEFVKKHPRLLQNPTWE
TRGNLESLWEELSSELNSHGPPRKDIATWRRALKDWKRFILRKVEKNEMQ
NMPFGTSLTSSEETIATLCRLNEDVSQIIMKVSDDEMHENSTTEFDVDEV
EDVVPEEDGGALQTSAEYVYEPEENKTDIDPLYLQSNKRAALASSRLAEE
ETTLLDKISNNLEMVHDTANSVQLALNEFFVLYKQKLYEDKRHHLAIEQL
MAEKIELKKKLLEIEQKKLSLK*
BS06626.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3995-PA | 322 | CG3995-PA | 1..322 | 1..322 | 1663 | 100 | Plus |
CG30428-PA | 263 | CG30428-PA | 3..256 | 73..301 | 187 | 25.6 | Plus |
CG30428-PB | 247 | CG30428-PB | 1..240 | 87..301 | 163 | 25 | Plus |