Clone BS06626 Report

Search the DGRC for BS06626

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:66
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptCG3995-RA
Protein status:BS06626.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06626.3prime Sequence

937 bp (855 high quality bases) assembled on 2005-12-04

> BS06626.3prime
ATGGTCTAGAAAGCTTTTATTTGAGCGACAGCTTTTTTTGCTCGATTTCC
AATAGTTTCTTTTTCAGTTCTATTTTCTCAGCCATTAACTGTTCAATTGC
CAAGTGATGTCGCTTGTCCTCGTACAGCTTCTGCTTGTACAGGACAAAAA
ATTCATTGAGTGCAAGTTGAACGCTGTTGGCGGTATCGTGCACCATTTCT
AGGTTATTGCTAATCTTGTCAAGCAGTGTGGTCTCCTCCTCCGCCAGTCG
ACTGCTGGCCAATGCGGCCCGTTTGTTAGATTGCAGGTAAAGCGGGTCAA
TGTCCGTTTTGTTCTCCTCCGGTTCGTAAACGTACTCGGCGGAAGTCTGA
AGGGCGCCACCATCTTCTTCCGGGACCACATCCTCTACTTCGTCCACATC
AAATTCCGTGGTGGAATTCTCATGCATTTCATCGTCGGAGACCTTCATAA
TAATCTGACTTACATCCTCGTTTAATCTACACAGTGTGGCTATTGTTTCC
TCCGACGAAGTAAGACTGGTGCCAAAAGGCATGTTCTGCATCTCATTCTT
TTCCACCTTTCTCAGGATAAACCTCTTCCAGTCCTTTAAGGCCCTTCTCC
AGGTGGCTATATCTTTTCGCGGCGGACCGTGGCTATTAAGTTCGGATGAC
AGTTCCTCCCACAGCGACTCCAGATTGCCCCGTGTTTCCCACGTCGGATT
CTGAAGCAGACGCGGATGTTTCTTCACGAATTCTAACAATATCAGCTCTT
GCGTTGAGTTGCGCGGCTTGGCTTTGTTCCGGTCGATGGCGATGGTGGTC
TGCGGCTGGAATTTGTACTTGGAGTTCCGGTTGAGTCCCGATGTGGGGTG
CATCCTGTTCATGTGCTTGCTTAGATTCGTGGTGGTCGTCTTGTAAGAGA
GCTTCGCCTTGCAGATATACACACCGCAAACGTGTCC

BS06626.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3995-PA 969 CG3995-RA 68..969 918..17 4510 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:50:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG3995-RA 1185 CG3995-RA 123..1043 936..17 4580 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 14:49:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17042038..17042614 17..593 2885 100 Plus
3R 32079331 3R 17042669..17043014 592..936 1680 99.7 Plus
Blast to na_te.dros performed 2015-01-30 14:50:00
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 3635..3676 74..33 111 73.8 Minus

BS06626.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:47:09 Download gff for BS06626.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3995-PA 48..969 17..937 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:28:15 Download gff for BS06626.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3995-PA 48..969 17..937 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:06:56 Download gff for BS06626.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3995-RA 122..1043 17..937 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:37:30 Download gff for BS06626.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3995-RA 122..1043 17..937 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:37:30 Download gff for BS06626.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17042038..17042613 17..592 100 <- Plus
3R 17042670..17043014 593..937 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:06:56 Download gff for BS06626.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12867760..12868335 17..592 100 <- Plus
arm_3R 12868392..12868736 593..937 99   Plus

BS06626.5prime Sequence

900 bp (848 high quality bases) assembled on 2005-12-04

> BS06626.5prime
GAAGTTATCAGTCGACATGAAGCGGAAAACGAGCGAGATCTGGTGCTTTT
TCCGGGCGGTGGACGACACGTTTGCGGTGTGTAATATCTGCAAGGCGAAG
CTCTCTTACAAGACGACCACCACGAATCTAAGCAAGCACATGAACAGGAT
GCACCCCACATCGGGACTCAACCGGAACTCCAAGTACAAATTCCAGCCGC
AGACCACCATCGCCATCGACCGGAACAAAGCCAAGCCGCGCAACTCAACG
CAAGAGCTGATATTGTTAGAATTCGTGAAGAAACATCCGCGTCTGCTTCA
GAATCCGACGTGGGAAACACGGGGCAATCTGGAGTCGCTGTGGGAGGAAC
TGTCATCCGAACTTAATAGCCACGGTCCGCCGCGAAAAGATATAGCCACC
TGGAGAAGGGCCTTAAAGGACTGGAAGAGGTTTATCCTGAGAAAGGTGGA
AAAGAATGAGATGCAGAACATGCCTTTTGGCACCAGTCTTACTTCGTCGG
AGGAAACAATAGCCACACTGTGTAGATTAAACGAGGATGTAAGTCAGATT
ATTATGAAGGTCTCCGACGATGAAATGCATGAGAATTCCACCACGGAATT
TGATGTGGACGAAGTAGAGGATGTGGTCCCGGAAGAAGATGGTGGCGCCC
TTCAGACTTCCGCCGAGTACGTTTACGAACCGGAGGAGAACAAAACGGAC
ATTGACCCGCTTTACCTGCAATCTAACAAACGGGCCGCATTGGCCAGCAG
TCGACTGGCGGAGGAGGAGACCACACTGCTTGACAAGATTAGCAATAACC
TAGAAATGGTGCACGATACCGCCAACAGCGTTCAACTTGCACTCAATGAA
TTTTTTGTCCTGTACAAGCAGAAGCTGTACGAGGACAAGCGACATCACTT

BS06626.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG3995-PA 969 CG3995-RA 1..884 17..900 4420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:32:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG3995-RA 1185 CG3995-RA 68..958 10..900 4440 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:32:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17042123..17042614 900..409 2460 100 Minus
3R 32079331 3R 17042669..17043069 410..10 1990 99.8 Minus
Blast to na_te.dros performed on 2015-02-11 10:32:06 has no hits.

BS06626.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:47:10 Download gff for BS06626.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3995-PA 1..884 17..900 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:28:16 Download gff for BS06626.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3995-PA 1..884 17..900 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:22:40 Download gff for BS06626.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3995-RA 63..958 2..900 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:26:30 Download gff for BS06626.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3995-RA 63..958 2..900 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:26:30 Download gff for BS06626.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17042123..17042613 410..900 100 <- Minus
3R 17042670..17043074 2..409 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:22:40 Download gff for BS06626.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12867845..12868335 410..900 100 <- Minus
arm_3R 12868392..12868796 2..409 98   Minus

BS06626.complete Sequence

1001 bp (1001 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635567

> BS06626.complete
GAAGTTATCAGTCGACATGAAGCGGAAAACGAGCGAGATCTGGTGCTTTT
TCCGGGCGGTGGACGACACGTTTGCGGTGTGTAATATCTGCAAGGCGAAG
CTCTCTTACAAGACGACCACCACGAATCTAAGCAAGCACATGAACAGGAT
GCACCCCACATCGGGACTCAACCGGAACTCCAAGTACAAATTCCAGCCGC
AGACCACCATCGCCATCGACCGGAACAAAGCCAAGCCGCGCAACTCAACG
CAAGAGCTGATATTGTTAGAATTCGTGAAGAAACATCCGCGTCTGCTTCA
GAATCCGACGTGGGAAACACGGGGCAATCTGGAGTCGCTGTGGGAGGAAC
TGTCATCCGAACTTAATAGCCACGGTCCGCCGCGAAAAGATATAGCCACC
TGGAGAAGGGCCTTAAAGGACTGGAAGAGGTTTATCCTGAGAAAGGTGGA
AAAGAATGAGATGCAGAACATGCCTTTTGGCACCAGTCTTACTTCGTCGG
AGGAAACAATAGCCACACTGTGTAGATTAAACGAGGATGTAAGTCAGATT
ATTATGAAGGTCTCCGACGATGAAATGCATGAGAATTCCACCACGGAATT
TGATGTGGACGAAGTAGAGGATGTGGTCCCGGAAGAAGATGGTGGCGCCC
TTCAGACTTCCGCCGAGTACGTTTACGAACCGGAGGAGAACAAAACGGAC
ATTGACCCGCTTTACCTGCAATCTAACAAACGGGCCGCATTGGCCAGCAG
TCGACTGGCGGAGGAGGAGACCACACTGCTTGACAAGATTAGCAATAACC
TAGAAATGGTGCACGATACCGCCAACAGCGTTCAACTTGCACTCAATGAA
TTTTTTGTCCTGTACAAGCAGAAGCTGTACGAGGACAAGCGACATCACTT
GGCAATTGAACAGTTAATGGCTGAGAAAATAGAACTGAAAAAGAAACTAT
TGGAAATCGAGCAAAAAAAGCTGTCGCTCAAATAAAAGCTTTCTAGACCA
T

BS06626.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:19:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG3995-RA 969 CG3995-PA 1..969 17..985 4845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG3995-RA 1185 CG3995-RA 68..1043 10..985 4865 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:19:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17042038..17042614 985..409 2885 100 Minus
3R 32079331 3R 17042669..17043069 410..10 1990 99.8 Minus
Blast to na_te.dros performed 2014-11-27 20:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 3635..3676 928..969 111 73.8 Plus

BS06626.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:36 Download gff for BS06626.complete
Subject Subject Range Query Range Percent Splice Strand
CG3995-RA 1..969 17..985 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:33 Download gff for BS06626.complete
Subject Subject Range Query Range Percent Splice Strand
CG3995-RA 31..1011 2..985 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:30 Download gff for BS06626.complete
Subject Subject Range Query Range Percent Splice Strand
CG3995-RA 75..1041 17..983 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:36 Download gff for BS06626.complete
Subject Subject Range Query Range Percent Splice Strand
CG3995-RA 31..1011 2..985 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:26 Download gff for BS06626.complete
Subject Subject Range Query Range Percent Splice Strand
CG3995-RA 75..1041 17..983 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:26 Download gff for BS06626.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17042040..17042613 410..983 100 <- Minus
3R 17042670..17043062 17..409 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:30 Download gff for BS06626.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12867762..12868335 410..983 100 <- Minus
arm_3R 12868392..12868784 17..409 100   Minus

BS06626.pep Sequence

Translation from 16 to 984

> BS06626.pep
MKRKTSEIWCFFRAVDDTFAVCNICKAKLSYKTTTTNLSKHMNRMHPTSG
LNRNSKYKFQPQTTIAIDRNKAKPRNSTQELILLEFVKKHPRLLQNPTWE
TRGNLESLWEELSSELNSHGPPRKDIATWRRALKDWKRFILRKVEKNEMQ
NMPFGTSLTSSEETIATLCRLNEDVSQIIMKVSDDEMHENSTTEFDVDEV
EDVVPEEDGGALQTSAEYVYEPEENKTDIDPLYLQSNKRAALASSRLAEE
ETTLLDKISNNLEMVHDTANSVQLALNEFFVLYKQKLYEDKRHHLAIEQL
MAEKIELKKKLLEIEQKKLSLK*

BS06626.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3995-PA 322 CG3995-PA 1..322 1..322 1663 100 Plus
CG30428-PA 263 CG30428-PA 3..256 73..301 187 25.6 Plus
CG30428-PB 247 CG30428-PB 1..240 87..301 163 25 Plus