Clone BS06628 Report

Search the DGRC for BS06628

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:66
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCG7810-RA
Protein status:BS06628.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06628.3prime Sequence

839 bp (815 high quality bases) assembled on 2005-12-04

> BS06628.3prime
ATGGTCTAGAAAGCTTTTATCCGTGACTATTCTGGAGACTGTGATGATTG
CTTAGATGCCTCATGTAGATATCCAAGTCATCTTCGCTAGATATAGCATT
CTCATCCGCAGCATGCTCCTCCAATTCCTCCTCGTCCTCGCTATCCTCAA
AGTAGGCATCTTCTTCATCCTGCTCAATTTGCTTCAGATCATCCAGCAAA
GTGTTATCATCTACGGCCTTATAATCAAAATCCTTGTCTTCGCCACTAAG
AAAGCGTTCCTTCATCATACTCAAGAACTCATTGCGTAGTAGTTCTCGCT
CTCCAGGATTATAGAACTCCGGTGTGGAGATCATAGTTGTATTCATTGGA
GCTCGGACTTCCGCATTTCGACTCGTTGAACAGGCCACTGGTTCATCATC
TTCAAATCCACCCCACTGCTTTCGGCAAGCGACAGGAACGTCACAGTCTG
CCTGAGGATTGGATTCACTTGTGACCTGCACGCTCTGCTTTCCTTCCTGC
TGCGTTTCCTCTAGTAATTCATCTCTTTGCTTTTTCTCCAACGTATGCAT
TAGTATTCCTGAGAAGCTAGTATTCCGAACATCGTAACTATCCCGAGCCT
TCTTTTCCGCCTCCGTTAGGTACTGACCCACTAGCTCCTGGTAGAGATCC
GGCGCCCTTTGCATCATCTCGTGTTCGCTAAAGTATTCTCCCTTGTCAAG
GAGCTGCTGCATGGCATGGTATCTTCGGTTTTTAATGGATACCGCACGAG
TGTTGAGTTTCCTCCTAAAATCCTCTAGCAGCAGGCACATCTCCTCCAGA
TTTTCATCTGCTTTAATGGGTTCCTTGACAGCCAGTTCC

BS06628.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:29:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG7810-PA 1095 CG7810-RA 273..1095 839..17 4115 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:39:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7810-RA 1320 CG7810-RA 345..1167 839..17 4115 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:39:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8310029..8310851 17..839 4115 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:39:46 has no hits.

BS06628.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:47:14 Download gff for BS06628.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7810-PA 273..1095 17..839 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:28:21 Download gff for BS06628.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7810-PA 273..1095 17..839 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:14:37 Download gff for BS06628.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7810-RA 345..1167 17..839 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:20 Download gff for BS06628.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7810-RA 345..1167 17..839 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:20 Download gff for BS06628.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8310029..8310851 17..839 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:14:37 Download gff for BS06628.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8310029..8310851 17..839 100   Plus

BS06628.5prime Sequence

888 bp (821 high quality bases) assembled on 2005-12-04

> BS06628.5prime
GAAGTTATCAGTCGACATGACAACTGGAAGCGATGCTGACGGGGATGGTG
ACCACCAGGGCAACAATGACATCGTCCCAAATCCAGAACATCCTCCGGAG
ATAATAGACATCTTCAAATCCTTGGCCGAAAACAATCAAATCGTCTTTAA
GTCGCAGCAAATTGATGATCCGGAAATTCCGGTCGAAGAGAAGCAACAAA
TAGCACGAGATGCCTTCGATAAGAACCGTGAGAACTTTCTCATCCGATTT
GGAGGCTTCCTGAATGTAAGACAACTGGGTTCCTTCCAGGAACTGGCTGT
CAAGGAACCCATTAAAGCAGATGAAAATCTGGAGGAGATGTGCCTGCTGC
TAGAGGATTTTAGGAGGAAACTCAACACTCGTGCGGTATCCATTAAAAAC
CGAAGATACCATGCCATGCAGCAGCTCCTTGACAAGGGAGAATACTTTAG
CGAACACGAGATGATGCAAAGGGCGCCGGATCTCTACCAGGAGCTAGTGG
GTCAGTACCTAACGGAGGCGGAAAAGAAGGCTCGGGATAGTTACGATGTT
CGGAATACTAGCTTCTCAGGAATACTAATGCATACGTTGGAGAAAAAGCA
AAGAGATGAATTACTAGAGGAAACGCAGCAGGAAGGAAAGCAGAGCGTGC
AGGTCACAAGTGAATCCAATCCTCAGGCAGACTGTGACGTTCCTGTCGCT
TGCCGAAAGCAGTGGGGTGGATTTGAAGATGATGAACCAGTGGCCTGTTC
AACGAGTCGAAATGCGGAAGTCCGAGCTCCAATGAATACAACTATGATCT
CCACACCGGAGTTCTATAATCCTGGAGAGCGAGAACTACTACGCAATGAG
TTCTTGAGTATGATGAAGGAACGCTTTCTTAGTGGCGA

BS06628.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG7810-PA 1095 CG7810-RA 1..872 17..888 4360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7810-RA 1320 CG7810-RA 73..944 17..888 4360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:31:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8310252..8311123 888..17 4360 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:31:49 has no hits.

BS06628.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:47:15 Download gff for BS06628.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7810-PA 1..871 17..887 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:28:23 Download gff for BS06628.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7810-PA 1..871 17..887 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:12:50 Download gff for BS06628.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7810-RA 73..943 17..887 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:59:54 Download gff for BS06628.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7810-RA 73..943 17..887 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:59:54 Download gff for BS06628.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8310253..8311123 17..887 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:12:50 Download gff for BS06628.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8310253..8311123 17..887 100   Minus

BS06628.complete Sequence

1127 bp (1127 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635569

> BS06628.complete
GAAGTTATCAGTCGACATGACAACTGGAAGCGATGCTGACGGGGATGGTG
ACCACCAGGGCAACAATGACATCGTCCCAAATCCAGAACATCCTCCGGAG
ATAATAGACATCTTCAAATCCTTGGCCGAAAACAATCAAATCGTCTTTAA
GTCGCAGCAAATTGATGATCCGGAAATTCCGGTCGAAGAGAAGCAACAAA
TAGCACGAGATGCCTTCGATAAGAACCGTGAGAACTTTCTCATCCGATTT
GGAGGCTTCCTGAATGTAAGACAACTGGGTTCCTTCCAGGAACTGGCTGT
CAAGGAACCCATTAAAGCAGATGAAAATCTGGAGGAGATGTGCCTGCTGC
TAGAGGATTTTAGGAGGAAACTCAACACTCGTGCGGTATCCATTAAAAAC
CGAAGATACCATGCCATGCAGCAGCTCCTTGACAAGGGAGAATACTTTAG
CGAACACGAGATGATGCAAAGGGCGCCGGATCTCTACCAGGAGCTAGTGG
GTCAGTACCTAACGGAGGCGGAAAAGAAGGCTCGGGATAGTTACGATGTT
CGGAATACTAGCTTCTCAGGAATACTAATGCATACGTTGGAGAAAAAGCA
AAGAGATGAATTACTAGAGGAAACGCAGCAGGAAGGAAAGCAGAGCGTGC
AGGTCACAAGTGAATCCAATCCTCAGGCAGACTGTGACGTTCCTGTCGCT
TGCCGAAAGCAGTGGGGTGGATTTGAAGATGATGAACCAGTGGCCTGTTC
AACGAGTCGAAATGCGGAAGTCCGAGCTCCAATGAATACAACTATGATCT
CCACACCGGAGTTCTATAATCCTGGAGAGCGAGAACTACTACGCAATGAG
TTCTTGAGTATGATGAAGGAACGCTTTCTTAGTGGCGAAGACAAGGATTT
TGATTATAAGGCCGTAGATGATAACACTTTGCTGGATGATCTGAAGCAAA
TTGAGCAGGATGAAGAAGATGCCTACTTTGAGGATAGCGAGGACGAGGAG
GAATTGGAGGAGCATGCTGCGGATGAGAATGCTATATCTAGCGAAGATGA
CTTGGATATCTACATGAGGCATCTAAGCAATCATCACAGTCTCCAGAATA
GTCACGGATAAAAGCTTTCTAGACCAT

BS06628.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:01:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG7810-RA 1095 CG7810-PA 1..1095 17..1111 5475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG7810-RA 1320 CG7810-RA 73..1167 17..1111 5475 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8310029..8311123 1111..17 5475 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:01:11 has no hits.

BS06628.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:20 Download gff for BS06628.complete
Subject Subject Range Query Range Percent Splice Strand
CG7810-RA 1..1095 17..1111 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:13 Download gff for BS06628.complete
Subject Subject Range Query Range Percent Splice Strand
CG7810-RA 22..1116 17..1111 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:45 Download gff for BS06628.complete
Subject Subject Range Query Range Percent Splice Strand
CG7810-RA 73..1165 17..1109 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:20 Download gff for BS06628.complete
Subject Subject Range Query Range Percent Splice Strand
CG7810-RA 22..1116 17..1111 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:26 Download gff for BS06628.complete
Subject Subject Range Query Range Percent Splice Strand
CG7810-RA 73..1165 17..1109 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:08:26 Download gff for BS06628.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8310031..8311123 17..1109 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:45 Download gff for BS06628.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8310031..8311123 17..1109 100   Minus

BS06628.pep Sequence

Translation from 16 to 1110

> BS06628.pep
MTTGSDADGDGDHQGNNDIVPNPEHPPEIIDIFKSLAENNQIVFKSQQID
DPEIPVEEKQQIARDAFDKNRENFLIRFGGFLNVRQLGSFQELAVKEPIK
ADENLEEMCLLLEDFRRKLNTRAVSIKNRRYHAMQQLLDKGEYFSEHEMM
QRAPDLYQELVGQYLTEAEKKARDSYDVRNTSFSGILMHTLEKKQRDELL
EETQQEGKQSVQVTSESNPQADCDVPVACRKQWGGFEDDEPVACSTSRNA
EVRAPMNTTMISTPEFYNPGERELLRNEFLSMMKERFLSGEDKDFDYKAV
DDNTLLDDLKQIEQDEEDAYFEDSEDEEELEEHAADENAISSEDDLDIYM
RHLSNHHSLQNSHG*

BS06628.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG7810-PA 364 CG7810-PA 1..364 1..364 1902 100 Plus