Clone Sequence Records
BS06630.3prime Sequence
801 bp (800 high quality bases) assembled on 2005-12-04
> BS06630.3prime
ATGGTCTAGAAAGCTTTCAATAGAAGAGGTTGTTTACGTTGTACTCCTCC
TTGGCGCTGCACAGATACTTGTACTTGGGATTGGTACCGGTGGTACACTT
GCTGGCCGCCTTGGAGCAGGAACTGTACATCTTGATGCCCAGAACATTGG
TGGCCGCATAGTTACAGGCCAGCAGGAAGGCCTTGTACGATTGGCCGGAC
ACGGAGTACGTGGCCGCGGCACAACCCACTTCCGTATTCCGATCGGCAAC
GAGCACCGTGAAATGTCCAATGGCCGGACCATTGTAGTTCGACGGATAGG
CATCGATGTAGGCCTGTTTGGTGTACACCGCCTCATCGTACCACATATCG
ACGCCCCATTCTAGATAGTGTGTAACATTTAGCGGATTGTAGTAGCCCAT
CCAGGCCAGATTCTGGCCAGACCAGTCGAAAGCATCCGTATTGTGGCAGC
CGTCGTGTTTCATTTGACAACTTTTCACGTTCAAACTGGCCAAGTAAGCC
AGTTCATCGTTCCACTTGATCGTGGCCATTCGACAGGCGGCACTCAGATT
GGCATTCAGTCCGCCGGCGATGTGGTTGCGATACTCGTTCGTCCTGGCCA
CCAGTGCATCCTTCTCAGCGCTGGAGAGGGTCAACAGGGTGGCGTCACTG
GGACAGCTTGAGGCCCAGGCTCCATTATTGTCGCATCCCAGATTCTTGGT
GCTTCCGCAGCTCTTTTTGCAATAATCGGTGGCGGAGGCGATGCCAAATG
CCAGAGATAGGCTAAATATGATCACGAAGTTGCGCATGTCGACTGATAAC
T
BS06630.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9538-PA | 771 | Ag5r-RA | 1..771 | 787..17 | 3855 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:30:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ag5r-RC | 1760 | CG9538-RC | 342..1112 | 787..17 | 3855 | 100 | Minus |
| Ag5r-RB | 1446 | CG9538-RB | 28..798 | 787..17 | 3855 | 100 | Minus |
| Ag5r-RA | 1011 | CG9538-RA | 28..798 | 787..17 | 3855 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:30:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14785312..14785965 | 17..670 | 3270 | 100 | Plus |
| X | 23542271 | X | 14786093..14786210 | 670..787 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:30:35 has no hits.
BS06630.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:47:18 Download gff for
BS06630.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ag5r-PA | 1..771 | 17..787 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:28:28 Download gff for
BS06630.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9538-PA | 1..771 | 17..787 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:44:18 Download gff for
BS06630.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ag5r-RA | 25..801 | 13..790 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:52:26 Download gff for
BS06630.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ag5r-RA | 25..801 | 13..790 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:52:26 Download gff for
BS06630.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14785309..14785965 | 13..670 | 99 | <- | Plus |
| X | 14786094..14786213 | 671..790 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:44:18 Download gff for
BS06630.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14679342..14679998 | 13..670 | 99 | <- | Plus |
| arm_X | 14680127..14680246 | 671..790 | 99 | | Plus |
BS06630.5prime Sequence
801 bp (749 high quality bases) assembled on 2005-12-04
> BS06630.5prime
GAAGTTATCAGTCGACATGCGCAACTTCGTGATCATATTTAGCCTATCTC
TGGCATTTGGCATCGCCTCCGCCACCGATTATTGCAAAAAGAGCTGCGGA
AGCACCAAGAATCTGGGATGCGACAATAATGGAGCCTGGGCCTCAAGCTG
TCCCAGTGACGCCACCCTGTTGACCCTCTCCAGCGCTGAGAAGGATGCAC
TGGTGGCCAGGACGAACGAGTATCGCAACCACATCGCCGGCGGACTGAAT
GCCAATCTGAGTGCCGCCTGTCGAATGGCCACGATCAAGTGGAACGATGA
ACTGGCTTACTTGGCCAGTTTGAACGTGAAAAGTTGTCAAATGAAACACG
ACGGCTGCCACAATACGGATGCTTTCGACTGGTCTGGCCAGAATCTGGCC
TGGATGGGCTACTACAATCCGCTAAATGTTACACACTATCTAGAATGGGG
CGTCGATATGTGGTACGATGAGGCGGTGTACACCAAACAGGCCTACATCG
ATGCCTATCCGTCGAACTACAATGGTCCGGCCATTGGACATTTCACGGTG
CTCGTTGCCGATCGGAATACGGAAGTGGGTTGTGCCGCGGCCACGTACTC
CGTGTCCGGCCAATCGTACAAGGCCTTCCTGCTGGCCTGTAACTATGCGG
CCACCAATGTTCTGGGCATCAAGATGTACAGTTCCTGCTCCAAGGCGGCC
AGCAAGTGTACCACCGGTACCAATCCCAAGTACAAGTATCTGTGCAGCGC
CAAGGAGGAGTACAACGTANACAACCTCTTCTATTGAAAGCTTTCTAGAC
C
BS06630.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9538-PA | 771 | Ag5r-RA | 1..771 | 17..787 | 3836 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:10:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ag5r-RC | 1760 | CG9538-RC | 342..1112 | 17..787 | 3844 | 99.9 | Plus |
| Ag5r-RB | 1446 | CG9538-RB | 28..798 | 17..787 | 3844 | 99.9 | Plus |
| Ag5r-RA | 1011 | CG9538-RA | 28..798 | 17..787 | 3844 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:09:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14785312..14785965 | 787..134 | 3259 | 99.8 | Minus |
| X | 23542271 | X | 14786093..14786210 | 134..17 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:10:01 has no hits.
BS06630.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:47:19 Download gff for
BS06630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ag5r-PA | 1..771 | 17..787 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:28:29 Download gff for
BS06630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9538-PA | 1..771 | 17..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:38:00 Download gff for
BS06630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ag5r-RA | 25..801 | 14..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:44 Download gff for
BS06630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ag5r-RA | 25..801 | 14..791 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:44 Download gff for
BS06630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14785309..14785965 | 134..791 | 99 | <- | Minus |
| X | 14786094..14786213 | 14..133 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:38:00 Download gff for
BS06630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14679342..14679998 | 134..791 | 99 | <- | Minus |
| arm_X | 14680127..14680246 | 14..133 | 99 | | Minus |
BS06630.complete Sequence
803 bp (803 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635570
> BS06630.complete
GAAGTTATCAGTCGACATGCGCAACTTCGTGATCATATTTAGCCTATCTC
TGGCATTTGGCATCGCCTCCGCCACCGATTATTGCAAAAAGAGCTGCGGA
AGCACCAAGAATCTGGGATGCGACAATAATGGAGCCTGGGCCTCAAGCTG
TCCCAGTGACGCCACCCTGTTGACCCTCTCCAGCGCTGAGAAGGATGCAC
TGGTGGCCAGGACGAACGAGTATCGCAACCACATCGCCGGCGGACTGAAT
GCCAATCTGAGTGCCGCCTGTCGAATGGCCACGATCAAGTGGAACGATGA
ACTGGCTTACTTGGCCAGTTTGAACGTGAAAAGTTGTCAAATGAAACACG
ACGGCTGCCACAATACGGATGCTTTCGACTGGTCTGGCCAGAATCTGGCC
TGGATGGGCTACTACAATCCGCTAAATGTTACACACTATCTAGAATGGGG
CGTCGATATGTGGTACGATGAGGCGGTGTACACCAAACAGGCCTACATCG
ATGCCTATCCGTCGAACTACAATGGTCCGGCCATTGGACATTTCACGGTG
CTCGTTGCCGATCGGAATACGGAAGTGGGTTGTGCCGCGGCCACGTACTC
CGTGTCCGGCCAATCGTACAAGGCCTTCCTGCTGGCCTGTAACTATGCGG
CCACCAATGTTCTGGGCATCAAGATGTACAGTTCCTGCTCCAAGGCGGCC
AGCAAGTGTACCACCGGTACCAATCCCAAGTACAAGTATCTGTGCAGCGC
CAAGGAGGAGTACAACGTAAACAACCTCTTCTATTGAAAGCTTTCTAGAC
CAT
BS06630.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:12:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ag5r-RC | 771 | CG9538-PC | 1..771 | 17..787 | 3855 | 100 | Plus |
| Ag5r-RB | 771 | CG9538-PB | 1..771 | 17..787 | 3855 | 100 | Plus |
| Ag5r-RA | 771 | CG9538-PA | 1..771 | 17..787 | 3855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ag5r-RC | 1760 | CG9538-RC | 342..1112 | 17..787 | 3855 | 100 | Plus |
| Ag5r-RB | 1446 | CG9538-RB | 28..798 | 17..787 | 3855 | 100 | Plus |
| Ag5r-RA | 1011 | CG9538-RA | 28..798 | 17..787 | 3855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14785312..14785965 | 787..134 | 3270 | 100 | Minus |
| X | 23542271 | X | 14786093..14786210 | 134..17 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:12:52 has no hits.
BS06630.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:21 Download gff for
BS06630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ag5r-RA | 1..771 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:14 Download gff for
BS06630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ag5r-RA | 21..797 | 14..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:45 Download gff for
BS06630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ag5r-RA | 28..797 | 17..786 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:21 Download gff for
BS06630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ag5r-RA | 21..797 | 14..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:03 Download gff for
BS06630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ag5r-RA | 28..797 | 17..786 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:03 Download gff for
BS06630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14786094..14786210 | 17..133 | 100 | | Minus |
| X | 14785313..14785965 | 134..786 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:45 Download gff for
BS06630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14679346..14679998 | 134..786 | 100 | <- | Minus |
| arm_X | 14680127..14680243 | 17..133 | 100 | | Minus |
BS06630.pep Sequence
Translation from 16 to 786
> BS06630.pep
MRNFVIIFSLSLAFGIASATDYCKKSCGSTKNLGCDNNGAWASSCPSDAT
LLTLSSAEKDALVARTNEYRNHIAGGLNANLSAACRMATIKWNDELAYLA
SLNVKSCQMKHDGCHNTDAFDWSGQNLAWMGYYNPLNVTHYLEWGVDMWY
DEAVYTKQAYIDAYPSNYNGPAIGHFTVLVADRNTEVGCAAATYSVSGQS
YKAFLLACNYAATNVLGIKMYSSCSKAASKCTTGTNPKYKYLCSAKEEYN
VNNLFY*
BS06630.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ag5r-PC | 256 | CG9538-PC | 1..256 | 1..256 | 1388 | 100 | Plus |
| Ag5r-PB | 256 | CG9538-PB | 1..256 | 1..256 | 1388 | 100 | Plus |
| Ag5r-PA | 256 | CG9538-PA | 1..256 | 1..256 | 1388 | 100 | Plus |
| Ag5r2-PA | 254 | CG9540-PA | 9..253 | 10..253 | 637 | 50.4 | Plus |
| CG9822-PA | 263 | CG9822-PA | 6..263 | 4..256 | 419 | 36.9 | Plus |
