Clone Sequence Records
BS06632.3prime Sequence
666 bp (665 high quality bases) assembled on 2005-12-04
> BS06632.3prime
ATGGTCTAGAAAGCTTCTAAAGACGAAAGCCTTTAGTGTCGCTGCCAAAA
GATCTTCTCCGCGTTGACTGGGTATCCAAGTCCGCGGACCGGCGGGAGCT
ATCAGAAGGCATATCCGACGGCGATTTGTCCGAAGTGCTGATAGAGGTGT
TCCAGGCCTCCTTGAACTCCGGCGTATGGAATCTCTCACCTGCACTGTGC
CGGCGCCTCGTCATCCTCTGCGCATTCTCGTGGTAAGCGATGTAGGTGCG
CAATTCAGCGATTCGCTTCTTTTCCTCCACGACCTTCTGGTTCAGCTGCG
CCTCCATCTTGCAAAAGCCCTCCAGCTGGCGCTTGTTTTGCTCCAGCTGC
TGCAACTGACGGTAGAAACCCAGGTTGTCCGATGCTCGCTGGTCCGCTTG
GAACTTGGAGATCTTGCGGTAGATCTGCTGGAATCGCAGGGGATCCGCGA
AGTAGTTGGCCACGCTAGTTGGCATATCCCGGTTGATCTGGATCGCTTTG
AGCACCTGGCCGCATAGCGGGCAGTTCTTTTCTAGCGAGGATTGGCCCAA
ACAGGGGCCGCAGATCACGTGCCGGCACTGGGTCAAGTGGAAGGGCACGG
CTGGATCAGTTTTGCGATGACGGAAACACTTGTTGCAATGCACTCGAAAC
ATGTCGACTGATAACT
BS06632.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12200-PA | 636 | CG12200-RA | 1..636 | 652..17 | 3180 | 100 | Minus |
CG31053-PA | 660 | CG31053-RA | 217..290 | 436..363 | 195 | 90.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:29:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12200-RA | 993 | CG12200-RA | 105..740 | 652..17 | 3180 | 100 | Minus |
CG31053-RA | 818 | CG31053-RA | 19..431 | 652..240 | 535 | 75.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:29:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19475167..19475802 | 652..17 | 3180 | 100 | Minus |
3R | 32079331 | 3R | 27927744..27928156 | 240..652 | 535 | 75.3 | Plus |
Blast to na_te.dros performed on 2015-02-01 08:29:40 has no hits.
BS06632.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:47:21 Download gff for
BS06632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12200-PA | 1..636 | 17..652 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:28:34 Download gff for
BS06632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12200-PA | 1..636 | 17..652 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:25:26 Download gff for
BS06632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12200-RA | 94..745 | 12..663 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:52:38 Download gff for
BS06632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12200-RA | 94..745 | 12..663 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:52:38 Download gff for
BS06632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19475156..19475807 | 12..663 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:25:26 Download gff for
BS06632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19369189..19369840 | 12..663 | 98 | | Minus |
BS06632.5prime Sequence
666 bp (665 high quality bases) assembled on 2005-12-04
> BS06632.5prime
GAAGTTATCAGTCGACATGTTTCGAGTGCATTGCAACAAGTGTTTCCGTC
ATCGCAAAACTGATCCAGCCGTGCCCTTCCACTTGACCCAGTGCCGGCAC
GTGATCTGCGGCCCCTGTTTGGGCCAATCCTCGCTAGAAAAGAACTGCCC
GCTATGCGGCCAGGTGCTCAAAGCGATCCAGATCAACCGGGATATGCCAA
CTAGCGTGGCCAACTACTTCGCGGATCCCCTGCGATTCCAGCAGATCTAC
CGCAAGATCTCCAAGTTCCAAGCGGACCAGCGAGCATCGGACAACCTGGG
TTTCTACCGTCAGTTGCAGCAGCTGGAGCAAAACAAGCGCCAGCTGGAGG
GCTTTTGCAAGATGGAGGCGCAGCTGAACCAGAAGGTCGTGGAGGAAAAG
AAGCGAATCGCTGAATTGCGCACCTACATCGCTTACCACGAGAATGCGCA
GAGGATGACGAGGCGCCGGCACAGTGCAGGTGAGAGATTCCATACGCCGG
AGTTCAAGGAGGCCTGGAACACCTCTATCAGCACTTCGGACAAATCGCCG
TCGGATATGCCTTCTGATAGCTCCCGCCGGTCCGCGGACTTGGATACCCA
GTCAACGCGGAGAAGATCTTTTGGCAGCGACACTAAAGGCTTTCGTCTTT
AGAAGCTTTCTAGACC
BS06632.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12200-PA | 636 | CG12200-RA | 1..636 | 17..652 | 3180 | 100 | Plus |
CG31053-PA | 660 | CG31053-RA | 217..290 | 233..306 | 195 | 90.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:31:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12200-RA | 993 | CG12200-RA | 105..740 | 17..652 | 3180 | 100 | Plus |
CG31053-RA | 818 | CG31053-RA | 19..431 | 17..429 | 535 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:31:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19475167..19475802 | 17..652 | 3180 | 100 | Plus |
3R | 32079331 | 3R | 27927744..27928156 | 429..17 | 535 | 75.3 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:31:35 has no hits.
BS06632.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:47:22 Download gff for
BS06632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12200-PA | 1..636 | 17..652 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:28:35 Download gff for
BS06632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12200-PA | 1..636 | 17..652 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:51:21 Download gff for
BS06632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12200-RA | 94..745 | 6..657 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:37:15 Download gff for
BS06632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12200-RA | 94..745 | 6..657 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:37:15 Download gff for
BS06632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19475156..19475807 | 6..657 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:51:21 Download gff for
BS06632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19369189..19369840 | 6..657 | 98 | | Plus |
BS06632.complete Sequence
668 bp (668 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635571
> BS06632.complete
GAAGTTATCAGTCGACATGTTTCGAGTGCATTGCAACAAGTGTTTCCGTC
ATCGCAAAACTGATCCAGCCGTGCCCTTCCACTTGACCCAGTGCCGGCAC
GTGATCTGCGGCCCCTGTTTGGGCCAATCCTCGCTAGAAAAGAACTGCCC
GCTATGCGGCCAGGTGCTCAAAGCGATCCAGATCAACCGGGATATGCCAA
CTAGCGTGGCCAACTACTTCGCGGATCCCCTGCGATTCCAGCAGATCTAC
CGCAAGATCTCCAAGTTCCAAGCGGACCAGCGAGCATCGGACAACCTGGG
TTTCTACCGTCAGTTGCAGCAGCTGGAGCAAAACAAGCGCCAGCTGGAGG
GCTTTTGCAAGATGGAGGCGCAGCTGAACCAGAAGGTCGTGGAGGAAAAG
AAGCGAATCGCTGAATTGCGCACCTACATCGCTTACCACGAGAATGCGCA
GAGGATGACGAGGCGCCGGCACAGTGCAGGTGAGAGATTCCATACGCCGG
AGTTCAAGGAGGCCTGGAACACCTCTATCAGCACTTCGGACAAATCGCCG
TCGGATATGCCTTCTGATAGCTCCCGCCGGTCCGCGGACTTGGATACCCA
GTCAACGCGGAGAAGATCTTTTGGCAGCGACACTAAAGGCTTTCGTCTTT
AGAAGCTTTCTAGACCAT
BS06632.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:12:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12200-RA | 636 | CG12200-PA | 1..636 | 17..652 | 3180 | 100 | Plus |
CG31053-RA | 660 | CG31053-PA | 1..413 | 17..429 | 535 | 75.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12200-RA | 993 | CG12200-RA | 105..740 | 17..652 | 3180 | 100 | Plus |
CG31053-RA | 818 | CG31053-RA | 19..431 | 17..429 | 535 | 75.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19475167..19475802 | 17..652 | 3180 | 100 | Plus |
3R | 32079331 | 3R | 27927744..27928156 | 429..17 | 535 | 75.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:12:45 has no hits.
BS06632.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:49 Download gff for
BS06632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12200-RA | 1..636 | 17..652 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:43 Download gff for
BS06632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12200-RA | 30..681 | 6..657 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:42:26 Download gff for
BS06632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12200-RA | 111..740 | 23..652 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:50 Download gff for
BS06632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12200-RA | 30..681 | 6..657 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:38 Download gff for
BS06632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12200-RA | 111..740 | 23..652 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:38 Download gff for
BS06632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19475173..19475802 | 23..652 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:42:26 Download gff for
BS06632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19369206..19369835 | 23..652 | 100 | | Plus |
BS06632.pep Sequence
Translation from 16 to 651
> BS06632.pep
MFRVHCNKCFRHRKTDPAVPFHLTQCRHVICGPCLGQSSLEKNCPLCGQV
LKAIQINRDMPTSVANYFADPLRFQQIYRKISKFQADQRASDNLGFYRQL
QQLEQNKRQLEGFCKMEAQLNQKVVEEKKRIAELRTYIAYHENAQRMTRR
RHSAGERFHTPEFKEAWNTSISTSDKSPSDMPSDSSRRSADLDTQSTRRR
SFGSDTKGFRL*
BS06632.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12200-PA | 211 | CG12200-PA | 1..211 | 1..211 | 1122 | 100 | Plus |
CG31053-PA | 219 | CG31053-PA | 1..219 | 1..211 | 555 | 50 | Plus |