Clone BS06632 Report

Search the DGRC for BS06632

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:66
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptCG12200-RA
Protein status:BS06632.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06632.3prime Sequence

666 bp (665 high quality bases) assembled on 2005-12-04

> BS06632.3prime
ATGGTCTAGAAAGCTTCTAAAGACGAAAGCCTTTAGTGTCGCTGCCAAAA
GATCTTCTCCGCGTTGACTGGGTATCCAAGTCCGCGGACCGGCGGGAGCT
ATCAGAAGGCATATCCGACGGCGATTTGTCCGAAGTGCTGATAGAGGTGT
TCCAGGCCTCCTTGAACTCCGGCGTATGGAATCTCTCACCTGCACTGTGC
CGGCGCCTCGTCATCCTCTGCGCATTCTCGTGGTAAGCGATGTAGGTGCG
CAATTCAGCGATTCGCTTCTTTTCCTCCACGACCTTCTGGTTCAGCTGCG
CCTCCATCTTGCAAAAGCCCTCCAGCTGGCGCTTGTTTTGCTCCAGCTGC
TGCAACTGACGGTAGAAACCCAGGTTGTCCGATGCTCGCTGGTCCGCTTG
GAACTTGGAGATCTTGCGGTAGATCTGCTGGAATCGCAGGGGATCCGCGA
AGTAGTTGGCCACGCTAGTTGGCATATCCCGGTTGATCTGGATCGCTTTG
AGCACCTGGCCGCATAGCGGGCAGTTCTTTTCTAGCGAGGATTGGCCCAA
ACAGGGGCCGCAGATCACGTGCCGGCACTGGGTCAAGTGGAAGGGCACGG
CTGGATCAGTTTTGCGATGACGGAAACACTTGTTGCAATGCACTCGAAAC
ATGTCGACTGATAACT

BS06632.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG12200-PA 636 CG12200-RA 1..636 652..17 3180 100 Minus
CG31053-PA 660 CG31053-RA 217..290 436..363 195 90.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:29:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG12200-RA 993 CG12200-RA 105..740 652..17 3180 100 Minus
CG31053-RA 818 CG31053-RA 19..431 652..240 535 75.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:29:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19475167..19475802 652..17 3180 100 Minus
3R 32079331 3R 27927744..27928156 240..652 535 75.3 Plus
Blast to na_te.dros performed on 2015-02-01 08:29:40 has no hits.

BS06632.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:47:21 Download gff for BS06632.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12200-PA 1..636 17..652 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:28:34 Download gff for BS06632.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12200-PA 1..636 17..652 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:25:26 Download gff for BS06632.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12200-RA 94..745 12..663 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:52:38 Download gff for BS06632.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12200-RA 94..745 12..663 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:52:38 Download gff for BS06632.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19475156..19475807 12..663 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:25:26 Download gff for BS06632.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19369189..19369840 12..663 98   Minus

BS06632.5prime Sequence

666 bp (665 high quality bases) assembled on 2005-12-04

> BS06632.5prime
GAAGTTATCAGTCGACATGTTTCGAGTGCATTGCAACAAGTGTTTCCGTC
ATCGCAAAACTGATCCAGCCGTGCCCTTCCACTTGACCCAGTGCCGGCAC
GTGATCTGCGGCCCCTGTTTGGGCCAATCCTCGCTAGAAAAGAACTGCCC
GCTATGCGGCCAGGTGCTCAAAGCGATCCAGATCAACCGGGATATGCCAA
CTAGCGTGGCCAACTACTTCGCGGATCCCCTGCGATTCCAGCAGATCTAC
CGCAAGATCTCCAAGTTCCAAGCGGACCAGCGAGCATCGGACAACCTGGG
TTTCTACCGTCAGTTGCAGCAGCTGGAGCAAAACAAGCGCCAGCTGGAGG
GCTTTTGCAAGATGGAGGCGCAGCTGAACCAGAAGGTCGTGGAGGAAAAG
AAGCGAATCGCTGAATTGCGCACCTACATCGCTTACCACGAGAATGCGCA
GAGGATGACGAGGCGCCGGCACAGTGCAGGTGAGAGATTCCATACGCCGG
AGTTCAAGGAGGCCTGGAACACCTCTATCAGCACTTCGGACAAATCGCCG
TCGGATATGCCTTCTGATAGCTCCCGCCGGTCCGCGGACTTGGATACCCA
GTCAACGCGGAGAAGATCTTTTGGCAGCGACACTAAAGGCTTTCGTCTTT
AGAAGCTTTCTAGACC

BS06632.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG12200-PA 636 CG12200-RA 1..636 17..652 3180 100 Plus
CG31053-PA 660 CG31053-RA 217..290 233..306 195 90.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:31:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG12200-RA 993 CG12200-RA 105..740 17..652 3180 100 Plus
CG31053-RA 818 CG31053-RA 19..431 17..429 535 75.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:31:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19475167..19475802 17..652 3180 100 Plus
3R 32079331 3R 27927744..27928156 429..17 535 75.3 Minus
Blast to na_te.dros performed on 2015-02-04 02:31:35 has no hits.

BS06632.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:47:22 Download gff for BS06632.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12200-PA 1..636 17..652 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:28:35 Download gff for BS06632.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12200-PA 1..636 17..652 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:51:21 Download gff for BS06632.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12200-RA 94..745 6..657 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:37:15 Download gff for BS06632.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12200-RA 94..745 6..657 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:37:15 Download gff for BS06632.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19475156..19475807 6..657 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:51:21 Download gff for BS06632.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19369189..19369840 6..657 98   Plus

BS06632.complete Sequence

668 bp (668 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635571

> BS06632.complete
GAAGTTATCAGTCGACATGTTTCGAGTGCATTGCAACAAGTGTTTCCGTC
ATCGCAAAACTGATCCAGCCGTGCCCTTCCACTTGACCCAGTGCCGGCAC
GTGATCTGCGGCCCCTGTTTGGGCCAATCCTCGCTAGAAAAGAACTGCCC
GCTATGCGGCCAGGTGCTCAAAGCGATCCAGATCAACCGGGATATGCCAA
CTAGCGTGGCCAACTACTTCGCGGATCCCCTGCGATTCCAGCAGATCTAC
CGCAAGATCTCCAAGTTCCAAGCGGACCAGCGAGCATCGGACAACCTGGG
TTTCTACCGTCAGTTGCAGCAGCTGGAGCAAAACAAGCGCCAGCTGGAGG
GCTTTTGCAAGATGGAGGCGCAGCTGAACCAGAAGGTCGTGGAGGAAAAG
AAGCGAATCGCTGAATTGCGCACCTACATCGCTTACCACGAGAATGCGCA
GAGGATGACGAGGCGCCGGCACAGTGCAGGTGAGAGATTCCATACGCCGG
AGTTCAAGGAGGCCTGGAACACCTCTATCAGCACTTCGGACAAATCGCCG
TCGGATATGCCTTCTGATAGCTCCCGCCGGTCCGCGGACTTGGATACCCA
GTCAACGCGGAGAAGATCTTTTGGCAGCGACACTAAAGGCTTTCGTCTTT
AGAAGCTTTCTAGACCAT

BS06632.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:12:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG12200-RA 636 CG12200-PA 1..636 17..652 3180 100 Plus
CG31053-RA 660 CG31053-PA 1..413 17..429 535 75.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG12200-RA 993 CG12200-RA 105..740 17..652 3180 100 Plus
CG31053-RA 818 CG31053-RA 19..431 17..429 535 75.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19475167..19475802 17..652 3180 100 Plus
3R 32079331 3R 27927744..27928156 429..17 535 75.3 Minus
Blast to na_te.dros performed on 2014-11-28 01:12:45 has no hits.

BS06632.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:49 Download gff for BS06632.complete
Subject Subject Range Query Range Percent Splice Strand
CG12200-RA 1..636 17..652 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:43 Download gff for BS06632.complete
Subject Subject Range Query Range Percent Splice Strand
CG12200-RA 30..681 6..657 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:42:26 Download gff for BS06632.complete
Subject Subject Range Query Range Percent Splice Strand
CG12200-RA 111..740 23..652 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:50 Download gff for BS06632.complete
Subject Subject Range Query Range Percent Splice Strand
CG12200-RA 30..681 6..657 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:38 Download gff for BS06632.complete
Subject Subject Range Query Range Percent Splice Strand
CG12200-RA 111..740 23..652 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:38 Download gff for BS06632.complete
Subject Subject Range Query Range Percent Splice Strand
X 19475173..19475802 23..652 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:42:26 Download gff for BS06632.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19369206..19369835 23..652 100   Plus

BS06632.pep Sequence

Translation from 16 to 651

> BS06632.pep
MFRVHCNKCFRHRKTDPAVPFHLTQCRHVICGPCLGQSSLEKNCPLCGQV
LKAIQINRDMPTSVANYFADPLRFQQIYRKISKFQADQRASDNLGFYRQL
QQLEQNKRQLEGFCKMEAQLNQKVVEEKKRIAELRTYIAYHENAQRMTRR
RHSAGERFHTPEFKEAWNTSISTSDKSPSDMPSDSSRRSADLDTQSTRRR
SFGSDTKGFRL*

BS06632.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG12200-PA 211 CG12200-PA 1..211 1..211 1122 100 Plus
CG31053-PA 219 CG31053-PA 1..219 1..211 555 50 Plus