Clone BS06639 Report

Search the DGRC for BS06639

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:66
Well:39
Vector:pDNR-Dual
Associated Gene/Transcriptscramb1-RA
Protein status:BS06639.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06639.3prime Sequence

873 bp (865 high quality bases) assembled on 2005-12-04

> BS06639.3prime
ATGGTCTAGAAAGCTTCTAAAGCATTCCGGGCCTATCGGTCTCTTGGTTT
CCGGCTTTCTCAAAGAACATGGCATCTATGAGGAATGTGGCGCCTAGCAA
AACGGCCTTCATGCGCACATCCAAGTCCAGTGGGAAATTGATGCCGAAGA
AGTCCGCATCCGTGAAAATTTCACGTGCCAGGCCCGACCACTGTTTCGAG
ATCTTGCCTATCTTCTCACCAGTGAGCGAAACAACATTGAACTCGACGTC
GCCGCAGAGCGAAAAGGTGCAGAAAGGTCCTTCGATGCGCATCACCGTGT
CACCCACGTGGTTGAGAATGCGGAAGGATGGCGAACAAATGGACCACTCC
TGCTCAATGGTGCCGATAACATTGCCGGGTGGTGCCGAGACCTCGATACT
CTGCAGACAGCAGGGAAACAGACAGGAGGAGCAGGCCAGCGGGCGGTGCA
TGTGGATCACTTCCTGCTGGAAGTTATCAAAGACACGCATGTCGAAGGGA
CGCGCAGGACCACAGCAATTGCGCGTGCAGCAGTCGTTGTCCTCCGCCGC
GAAATAGACCTTCTGACCCAGGGCGTTCTTGATCGTGAACTTGTTGTTGG
TCTCGAAACCAGTGAAGGCCTCGAGCAGCTCGACCTTTTGCTTAACTAAA
AGCTGGTCGATAGTCGTAAGGTACTCCAATCCGCGCGGACAGTTCGGAAT
TCCTGTAGGTATACTCATCCAGTCTCCTGCTGGTCCGCCCTGTGGGGCCA
TCCCTGGACCCATTCCCGGTCCCATTCCCGGTTGCGTGACAATGGGCTGT
TGTGGTTGTCCCGGTGGATAACCGCCGAATGCGTTTGGTGGTCCTCCTGG
TCCTGCTGGTCCGGGAGGATATC

BS06639.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG32056-PA 1251 CG32056-RA 395..1251 873..17 4110 99.1 Minus
CG32056-PB 702 CG32056-RB 1..702 718..17 3335 99 Minus
CG32056-PC 999 CG32056-RC 300..999 716..17 3325 99 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
scramb1-RA 2049 CG32056-RA 605..1461 873..17 4180 99.2 Minus
scramb1-RB 1655 CG32056-RB 350..1065 732..17 3460 98.9 Minus
scramb1-RC 1640 CG32056-RC 353..1052 716..17 3395 99 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10221609..10222105 234..730 2410 99 Plus
3L 28110227 3L 10221393..10221552 76..235 770 98.8 Plus
3L 28110227 3L 10223867..10224014 726..873 740 100 Plus
3L 28110227 3L 10221073..10221132 17..76 300 100 Plus
Blast to na_te.dros performed on 2015-02-10 19:08:51 has no hits.

BS06639.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:47:34 Download gff for BS06639.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32056-PA 395..1251 17..873 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:28:50 Download gff for BS06639.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32056-PA 395..1251 17..873 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:14:23 Download gff for BS06639.3prime
Subject Subject Range Query Range Percent Splice Strand
scramb1-RA 605..1461 17..873 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:28:50 Download gff for BS06639.3prime
Subject Subject Range Query Range Percent Splice Strand
scramb1-RA 605..1461 17..873 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:28:50 Download gff for BS06639.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 10221073..10221132 17..76 100 <- Plus
3L 10221394..10221552 77..235 98 <- Plus
3L 10221611..10222098 236..723 98 <- Plus
3L 10223864..10224014 724..873 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:14:23 Download gff for BS06639.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10214173..10214232 17..76 100 <- Plus
arm_3L 10214494..10214652 77..235 98 <- Plus
arm_3L 10214711..10215198 236..723 98 <- Plus
arm_3L 10216964..10217114 724..873 98   Plus

BS06639.5prime Sequence

896 bp (712 high quality bases) assembled on 2005-12-04

> BS06639.5prime
GAAGTTATCAGTCGACATGAAGAGTAACGTCAATCAGGGCGGTTACGCCC
CACCCGGTTTCGGATCCGGATTCCAGCCAAATGCTCCGCCCGCCGAAGGA
TTCGGCTACCCACCGCCCACTGGGGGCCACAACGCCCCCTATCCCCCCGC
ACCCGGTCATCCACAGCCGCCGCCGCCCACGAATTACGGGTTTATGCCAG
GTCCTCAGCCAGCCGGATACGCTCCAGTTCCCCAAATGCCGCCGTACGGA
GAAGCTCCGCCCTACGGAGCCGGACAACCACCTTACATGGGTGGTCCAGG
TGGTCAGCCACCTTATGCGGGTGGTCCAGGCGGACAGCCACCTTATGTAG
GTGGTCCTGGTGGACAGCCACACTACGGAGGAGGAGCACCACCGCCCCAG
GCCTTCGGCGGATATCCTCCCGGACCAGCAGGACCAGGAGGACCACCAAA
CGCATTCGGCGGTTATCCACCGGGACAACCACAACAGCCCATTGTCACGC
AACCGGGAATGGGACCGGGAATGGGTCCAGGGATGGCCCCACAGGGCGGA
CCAGCAGGAGACTGGATGAGTATACCTACAGGAATTCCGAACTGTCCGCG
CGGATTGGAGTACCTTACGACTATCGACCAGCTTTTAGTTAAGCAAAAGG
TCGAGCTGCTCGAGGCCTTCACTGGTTTCGAGACCAACAACAAGTTCACG
ATCAAGAACGCCCTGGGTCAGAAGGTCTATTTCGCGGCGGAGGACAACGA
CTGCTGCACGCGCAATTGCTGTGGTCCTGCGCGTCCCTTCGACATGCGTG
TCTTTGATAACTTCCAGCAGGAAGTGATCCACATGCACCGCCCGCTGGCC
TGCTCCTCCTGTCTGTTTCCCTGCTGTCTGCAGAGTATCGAGGTCT

BS06639.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG32056-PA 1251 CG32056-RA 1..880 17..896 4325 99.6 Plus
CG32056-PB 702 CG32056-RB 1..331 566..896 1605 99.3 Plus
CG32056-PC 999 CG32056-RC 300..628 568..896 1595 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:39:51
Subject Length Description Subject Range Query Range Score Percent Strand
scramb1-RA 2049 CG32056-RA 207..1090 13..896 4360 99.5 Plus
scramb1-RB 1655 CG32056-RB 350..694 552..896 1680 99.1 Plus
scramb1-RC 1640 CG32056-RC 353..681 568..896 1615 99.4 Plus
scramb1-RA 2049 CG32056-RA 472..535 308..371 185 85.9 Plus
scramb1-RA 2049 CG32056-RA 502..565 278..341 185 85.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:39:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10223867..10224237 558..188 1840 99.7 Minus
3L 28110227 3L 10221763..10222105 896..554 1685 99.4 Minus
3L 28110227 3L 10224859..10225034 188..13 865 99.4 Minus
3L 28110227 3L 10224054..10224117 341..278 185 85.9 Minus
3L 28110227 3L 10224084..10224147 371..308 185 85.9 Minus
Blast to na_te.dros performed on 2015-02-09 22:39:49 has no hits.

BS06639.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:47:36 Download gff for BS06639.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32056-PA 1..880 17..896 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:28:51 Download gff for BS06639.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32056-PA 1..880 17..896 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:27:03 Download gff for BS06639.5prime
Subject Subject Range Query Range Percent Splice Strand
scramb1-RA 205..1090 9..896 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:47:17 Download gff for BS06639.5prime
Subject Subject Range Query Range Percent Splice Strand
scramb1-RA 205..1090 9..896 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:47:17 Download gff for BS06639.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 10221763..10222098 561..896 99 <- Minus
3L 10223864..10224237 188..560 99 <- Minus
3L 10224860..10225036 9..187 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:27:03 Download gff for BS06639.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10214863..10215198 561..896 99 <- Minus
arm_3L 10216964..10217337 188..560 99 <- Minus
arm_3L 10217960..10218136 9..187 98   Minus

BS06639.complete Sequence

1283 bp (1283 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635572

> BS06639.complete
GAAGTTATCAGTCGACATGAAGAGTAACGTCAATCAGGGCGGTTACGCCC
CACCCGGTTTCGGATCCGGATTCCAGCCAAATGCTCCGCCCGCCGAAGGA
TTCGGCTACCCACCGCCCACTGGGGGCCACAACGCCCCCTATCCCCCCGC
ACCCGGTCATCCACAGCCGCCGCCGCCCACGAATTACGGGTTTATGCCAG
GTCCTCAGCCAGCCGGATACGCTCCAGTTCCCCAAATGCCGCCGTACGGA
GAAGCTCCGCCCTACGGAGCCGGACAACCACCTTACATGGGTGGTCCAGG
TGGTCAGCCACCTTATGCGGGTGGTCCAGGCGGACAGCCACCTTATGTAG
GTGGTCCTGGTGGACAGCCACACTACGGAGGAGGAGCACCACCGCCCCAG
GCCTTCGGCGGATATCCTCCCGGACCAGCAGGACCAGGAGGACCACCAAA
CGCATTCGGCGGTTATCCACCGGGACAACCACAACAGCCCATTGTCACGC
AACCGGGAATGGGACCGGGAATGGGTCCAGGGATGGCCCCACAGGGCGGA
CCAGCAGGAGACTGGATGAGTATACCTACAGGAATTCCGAACTGTCCGCG
CGGATTGGAGTACCTTACGACTATCGACCAGCTTTTAGTTAAGCAAAAGG
TCGAGCTGCTCGAGGCCTTCACTGGTTTCGAGACCAACAACAAGTTCACG
ATCAAGAACGCCCTGGGTCAGAAGGTCTATTTCGCGGCGGAGGACAACGA
CTGCTGCACGCGCAATTGCTGTGGTCCTGCGCGTCCCTTCGACATGCGTG
TCTTTGATAACTTCCAGCAGGAAGTGATCCACATGCACCGCCCGCTGGCC
TGCTCCTCCTGTCTGTTTCCCTGCTGTCTGCAGAGTATCGAGGTCTCGGC
ACCACCCGGCAATGTTATCGGCACCATTGAGCAGGAGTGGTCCATTTGTT
CGCCATCCTTCCGCATTCTCAACCACGTGGGTGACACGGTGATGCGCATC
GAAGGACCTTTCTGCACCTTTTCGCTCTGCGGCGACGTCGAGTTCAATGT
TGTTTCGCTCACTGGTGAGAAGATAGGCAAGATCTCGAAACAGTGGTCGG
GCCTGGCACGTGAAATTTTCACGGATGCGGACTTCTTCGGCATCAATTTC
CCACTGGACTTGGATGTGCGCATGAAGGCCGTTTTGCTAGGCGCCACATT
CCTCATAGATGCCATGTTCTTTGAGAAAGCCGGAAACCAAGAGACCGATA
GGCCCGGAATGCTTTAGAAGCTTTCTAGACCAT

BS06639.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:37:14
Subject Length Description Subject Range Query Range Score Percent Strand
scramb1-RA 1251 CG32056-PA 1..1251 17..1267 6135 99.4 Plus
scramb1-RB 702 CG32056-PB 1..702 566..1267 3405 99 Plus
scramb1-RC 999 CG32056-PC 300..999 568..1267 3395 99 Plus
scramb1-RA 1251 CG32056-PA 262..325 308..371 185 85.9 Plus
scramb1-RA 1251 CG32056-PA 292..355 278..341 185 85.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:37:15
Subject Length Description Subject Range Query Range Score Percent Strand
scramb1-RA 2049 CG32056-RA 207..1461 13..1267 6140 99.3 Plus
scramb1-RB 1655 CG32056-RB 350..1065 552..1267 3460 98.9 Plus
scramb1-RC 1640 CG32056-RC 353..1052 568..1267 3395 99 Plus
scramb1-RA 2049 CG32056-RA 472..535 308..371 185 85.9 Plus
scramb1-RA 2049 CG32056-RA 502..565 278..341 185 85.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:37:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10221609..10222105 1050..554 2410 99 Minus
3L 28110227 3L 10223867..10224237 558..188 1840 99.7 Minus
3L 28110227 3L 10224859..10225034 188..13 865 99.4 Minus
3L 28110227 3L 10221393..10221552 1208..1049 770 98.8 Minus
3L 28110227 3L 10221073..10221132 1267..1208 300 100 Minus
3L 28110227 3L 10224054..10224117 341..278 185 85.9 Minus
3L 28110227 3L 10224084..10224147 371..308 185 85.9 Minus
Blast to na_te.dros performed on 2014-11-27 16:37:13 has no hits.

BS06639.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:22 Download gff for BS06639.complete
Subject Subject Range Query Range Percent Splice Strand
scramb1-RA 1..1251 17..1267 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:16 Download gff for BS06639.complete
Subject Subject Range Query Range Percent Splice Strand
scramb1-RA 205..1461 9..1267 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:46 Download gff for BS06639.complete
Subject Subject Range Query Range Percent Splice Strand
scramb1-RA 211..1461 17..1267 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:22 Download gff for BS06639.complete
Subject Subject Range Query Range Percent Splice Strand
scramb1-RA 205..1461 9..1267 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:22:44 Download gff for BS06639.complete
Subject Subject Range Query Range Percent Splice Strand
scramb1-RA 211..1461 17..1267 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:22:44 Download gff for BS06639.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10223864..10224237 188..560 99 <- Minus
3L 10224860..10225030 17..187 100   Minus
3L 10221073..10221132 1208..1267 100 <- Minus
3L 10221394..10221552 1049..1207 98 <- Minus
3L 10221611..10222098 561..1048 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:46 Download gff for BS06639.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10214173..10214232 1208..1267 100 <- Minus
arm_3L 10214494..10214652 1049..1207 98 <- Minus
arm_3L 10214711..10215198 561..1048 98 <- Minus
arm_3L 10216964..10217337 188..560 99 <- Minus
arm_3L 10217960..10218130 17..187 100   Minus

BS06639.pep Sequence

Translation from 16 to 1266

> BS06639.pep
MKSNVNQGGYAPPGFGSGFQPNAPPAEGFGYPPPTGGHNAPYPPAPGHPQ
PPPPTNYGFMPGPQPAGYAPVPQMPPYGEAPPYGAGQPPYMGGPGGQPPY
AGGPGGQPPYVGGPGGQPHYGGGAPPPQAFGGYPPGPAGPGGPPNAFGGY
PPGQPQQPIVTQPGMGPGMGPGMAPQGGPAGDWMSIPTGIPNCPRGLEYL
TTIDQLLVKQKVELLEAFTGFETNNKFTIKNALGQKVYFAAEDNDCCTRN
CCGPARPFDMRVFDNFQQEVIHMHRPLACSSCLFPCCLQSIEVSAPPGNV
IGTIEQEWSICSPSFRILNHVGDTVMRIEGPFCTFSLCGDVEFNVVSLTG
EKIGKISKQWSGLAREIFTDADFFGINFPLDLDVRMKAVLLGATFLIDAM
FFEKAGNQETDRPGML*

BS06639.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
scramb1-PA 416 CG32056-PA 1..416 1..416 2352 100 Plus
scramb1-PB 233 CG32056-PB 1..233 184..416 1250 100 Plus
scramb1-PC 332 CG32056-PC 101..332 185..416 1245 100 Plus
scramb2-PA 263 CG1893-PA 40..263 182..404 761 59.8 Plus
CG9084-PB 275 CG9084-PB 67..272 196..403 236 29.1 Plus