Clone BS06640 Report

Search the DGRC for BS06640

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:66
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptRpd3-RA
Protein status:BS06640.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06640.3prime Sequence

952 bp (853 high quality bases) assembled on 2005-12-04

> BS06640.3prime
ATGGTCTAGAAAGCTTTCAAATGTTGTTCTCCTTGGCGCCCTTGGCCCCG
GCACCGGAACCTGATCCCGAACCGGATCCGGCATTAGCTGTCGCTCCGGC
ATCATTATCGCTCTTGTTGTTACTGTTGTTGTTGCTATTGGTATTAGACG
CCGTCGACTCCTCGCCATCAGCTCCGTCGCCCTTTTCCTTTTCGTCCTTG
ATCTCGCTGGACGTCTCTGAGGATGCCTTGTTGCTGTTGGTGTCCTTGTC
GAGACGCGGCCGCTTCCGCTGACCCTTGTACGAACGGTTATCCCTCCGAC
CGCCCTCGCCCTCATCCTCCGAATCGGAGTACTCGTTCTCGGGCACAATG
CGCTTGTCCTTGTCGCTCTGCGGCAGGCGATCATCCTTGTCGACCTTGTC
CTCGTCGTCGGACTCATCGTTGATGGCATCCTCGGGAATCGCTTGGATTT
GAACGCCCGGAGCGTGAGGCAGCATGCGCAGGTTCTCGAACAGACGGTTC
TTGATCTTCTCCAGGTACTCGGATGTATTCTGATTCGTCATATTGCTGGG
ACTAATGTGCAGCTTAAAATCGGGCCCAAAGTACTCGAAGTAATCGTTGT
AGGGCAGTTCGTTGGCTATCTCCACGGCCAGTGCAACGGAGGTCTCATAG
GTCCAGCAGCGGGATACATTACGAATGGTATAACCACCACCGCCGACCAT
CAGGAATGGCAGATTATATTTCTTCACGAACTCCACGCATTTGCCGTGAC
CCTTGACGGTGAGATTGAAGCAACCTAACCGATCGCCAGTCAGCGAATCG
GCGCCACACTGCAGCACCACGGCTGCCGGCTGGGATGTTTCCATCACCTT
GCTGATAATGGGCACAATATGCTCTCGTACGCATCATCATCCATGCCATC
GCGCAGGGGTATATTAACCGCATAATACTTTCCCTTTGCGGCGCCATGTC
TC

BS06640.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7471-PA 1566 Rpd3-RA 716..1566 867..17 4055 99 Minus
CG7471-PA 1566 Rpd3-RA 646..716 936..866 280 95.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:53:21
Subject Length Description Subject Range Query Range Score Percent Strand
Rpd3-RA 2124 CG7471-RA 835..1772 952..17 4445 98.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:53:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4628090..4628857 946..180 3610 98.3 Minus
3L 28110227 3L 4628951..4629115 181..17 810 99.4 Minus
Blast to na_te.dros performed 2015-02-12 00:53:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2380..2415 145..110 126 83.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2329..2391 142..81 114 66.7 Minus
Doc3-element 4740 Doc3-element DOC3 4740bp 523..559 142..106 113 78.4 Minus

BS06640.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:47:37 Download gff for BS06640.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpd3-PA 629..1566 17..952 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:28:53 Download gff for BS06640.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7471-PA 629..1566 17..952 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:48:29 Download gff for BS06640.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpd3-RA 835..1772 17..952 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:21:43 Download gff for BS06640.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpd3-RA 835..1772 17..952 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:21:43 Download gff for BS06640.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4628083..4628856 181..952 98 -> Minus
3L 4628952..4629115 17..180 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:48:29 Download gff for BS06640.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4628083..4628856 181..952 98 -> Minus
arm_3L 4628952..4629115 17..180 99   Minus

BS06640.5prime Sequence

900 bp (755 high quality bases) assembled on 2005-12-04

> BS06640.5prime
GAAGTTATCAGTCGACATGCAGTCTCACAGCAAAAAGCGCGTTTGTTACT
ACTACGACAGCGACATTGGCAACTACTACTATGGCCAGGGTCATCCCATG
AAGCCCCATCGCATACGCATGACCCACAACCTGCTGCTCAACTATGGGCT
CTATCGAAAAATGGAAATATACCGTCCCCATAAAGCCACTGCCGATGAGA
TGACCAAGTTCCACTCGGACGAGTACGTCCGGTTCTTGCGATCCATTCGG
CCGGACAACATGTCGGAGTACAACAAGCAGATGCAGCGATTCAATGTCGG
CGAAGATTGTCCCGTCTTCGATGGACTATACGAGTTTTGCCAACTCTCCG
CCGGAGGATCCGTAGCTGCGGCCGTAAAACTGAATAAGCAAGCCTCGGAG
ATTTGCATCAATTGGGGCGGTGGGCTGCATCACGCCAAAAAATCGGAGGC
CTCGGGCTTCTGCTACGTCAACGACATTGTTCTGGGAATTCTGGAACTGC
TTAAATACCATCAGCGTGTTCTCTACATAGATATAGACGTCCATCACGGC
GATGGCGTGGAGGAGGCGTTCTATACCACCGATCGTGTGATGACTGTCAG
CTTCCACAAGTACGGAGAGTATTTCCCGGGCACCGGCGATCTGCGAGACA
TTGGCGCCGGCAAGGGAAAGTATTATGCGGTTAATATACCCCTGCGCGAT
GGCATGGATGATGATGCGTACGAGAGCATATTTGTGCCCATTATCAGCAA
GGTGATGGAAACATTCCAGCCGGCAGCCGTGGTGCTGCAGTGTGGCGCCG
ATTCGCTGACTGGCGATCGGTTAGGTTGCTTTCATCTCACCGTCAAGGGT
CACGGCAAATGCGTGGAAGTCGTGAAGAAATATAATCTGCCATTCCTGAT

BS06640.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG7471-PA 1566 Rpd3-RA 1..884 17..900 4045 98.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
Rpd3-RA 2124 CG7471-RA 207..1090 17..900 4195 98.3 Plus
Hdac3-RA 1660 CG2128-RA 689..880 425..616 285 77.2 Plus
CG45100-RA 1660 CG45100-RA 689..880 425..616 285 77.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4627611..4628338 173..900 3415 97.9 Plus
3L 28110227 3L 4627420..4627532 60..172 565 100 Plus
3R 32079331 3R 5473590..5473781 616..425 285 76.6 Minus
3L 28110227 3L 4626940..4626983 17..60 220 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:34:20 has no hits.

BS06640.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:47:38 Download gff for BS06640.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpd3-PA 1..884 17..900 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:28:55 Download gff for BS06640.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7471-PA 1..884 17..900 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:15:20 Download gff for BS06640.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpd3-RA 207..1090 17..900 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:44:08 Download gff for BS06640.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpd3-RA 207..1090 17..900 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:44:08 Download gff for BS06640.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4626940..4626982 17..59 100 -> Plus
3L 4627420..4627532 60..172 100 -> Plus
3L 4627611..4628338 173..900 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:15:20 Download gff for BS06640.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4626940..4626982 17..59 100 -> Plus
arm_3L 4627420..4627532 60..172 100 -> Plus
arm_3L 4627611..4628338 173..900 97   Plus

BS06640.complete Sequence

1598 bp (1598 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635573

> BS06640.complete
GAAGTTATCAGTCGACATGCAGTCTCACAGCAAAAAGCGCGTTTGTTACT
ACTACGACAGCGACATTGGCAACTACTACTATGGCCAGGGTCATCCCATG
AAGCCCCATCGCATACGCATGACCCACAACCTGCTGCTCAACTATGGGCT
CTATCGAAAAATGGAAATATACCGTCCCCATAAAGCCACTGCCGATGAGA
TGACCAAGTTCCACTCGGACGAGTACGTCCGGTTCTTGCGATCCATTCGG
CCGGACAACATGTCGGAGTACAACAAGCAGATGCAGCGATTCAATGTCGG
CGAAGATTGTCCCGTCTTCGATGGACTATACGAGTTTTGCCAACTCTCCG
CCGGAGGATCCGTAGCTGCGGCCGTAAAACTGAATAAGCAAGCCTCGGAG
ATTTGCATCAATTGGGGCGGTGGGCTGCATCACGCCAAAAAATCGGAGGC
CTCGGGCTTCTGCTACGTCAACGACATTGTTCTGGGAATTCTGGAACTGC
TTAAATACCATCAGCGTGTTCTCTACATAGATATAGACGTCCATCACGGC
GATGGCGTGGAGGAGGCGTTCTATACCACCGATCGTGTGATGACTGTCAG
CTTCCACAAGTACGGAGAGTATTTCCCGGGCACCGGCGATCTGCGAGACA
TTGGCGCCGGCAAGGGAAAGTATTATGCGGTTAATATACCCCTGCGCGAT
GGCATGGATGATGATGCGTACGAGAGCATATTTGTGCCCATTATCAGCAA
GGTGATGGAAACATTCCAGCCGGCAGCCGTGGTGCTGCAGTGTGGCGCCG
ATTCGCTGACTGGCGATCGGTTAGGTTGCTTCAATCTCACCGTCAAGGGT
CACGGCAAATGCGTGGAGTTCGTGAAGAAATATAATCTGCCATTCCTGAT
GGTCGGCGGTGGTGGTTATACCATTCGTAATGTATCCCGCTGCTGGACCT
ATGAGACCTCCGTTGCACTGGCCGTGGAGATAGCCAACGAACTGCCCTAC
AACGATTACTTCGAGTACTTTGGGCCCGATTTTAAGCTGCACATTAGTCC
CAGCAATATGACGAATCAGAATACATCCGAGTACCTGGAGAAGATCAAGA
ACCGTCTGTTCGAGAACCTGCGCATGCTGCCTCACGCTCCGGGCGTTCAA
ATCCAAGCGATTCCCGAGGATGCCATCAACGATGAGTCCGACGACGAGGA
CAAGGTCGACAAGGATGATCGCCTGCCGCAGAGCGACAAGGACAAGCGCA
TTGTGCCCGAGAACGAGTACTCCGATTCGGAGGATGAGGGCGAGGGCGGT
CGGAGGGATAACCGTTCGTACAAGGGTCAGCGGAAGCGGCCGCGTCTCGA
CAAGGACACCAACAGCAACAAGGCATCCTCAGAGACGTCCAGCGAGATCA
AGGACGAAAAGGAAAAGGGCGACGGAGCTGATGGCGAGGAGTCGACGGCG
TCTAATACCAATAGCAACAACAACAGTAACAACAAGAGCGATAATGATGC
CGGAGCGACAGCTAATGCCGGATCCGGTTCGGGATCAGGTTCCGGTGCCG
GGGCCAAGGGCGCCAAGGAGAACAACATTTGAAAGCTTTCTAGACCAT

BS06640.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
Rpd3-RA 1566 CG7471-PA 1..1566 17..1582 7620 99.1 Plus
Hdac3-RA 1317 CG2128-PA 412..603 425..616 285 76.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:31:08
Subject Length Description Subject Range Query Range Score Percent Strand
Rpd3-RA 2124 CG7471-RA 207..1772 17..1582 7620 99.1 Plus
Hdac3-RA 1660 CG2128-RA 689..880 425..616 285 76.6 Plus
CG45100-RA 1660 CG45100-RA 689..880 425..616 285 76.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:31:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4627611..4628857 173..1419 6040 99 Plus
3L 28110227 3L 4628951..4629115 1418..1582 810 99.4 Plus
3L 28110227 3L 4627420..4627532 60..172 565 100 Plus
3R 32079331 3R 5473590..5473781 616..425 285 76.6 Minus
3L 28110227 3L 4626940..4626983 17..60 220 100 Plus
Blast to na_te.dros performed 2014-11-27 15:31:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2380..2415 1454..1489 126 83.3 Plus
Doc3-element 4740 Doc3-element DOC3 4740bp 523..559 1457..1493 113 78.4 Plus

BS06640.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:23 Download gff for BS06640.complete
Subject Subject Range Query Range Percent Splice Strand
Rpd3-RA 1..1566 17..1582 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:18 Download gff for BS06640.complete
Subject Subject Range Query Range Percent Splice Strand
Rpd3-RA 224..1789 17..1582 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:27 Download gff for BS06640.complete
Subject Subject Range Query Range Percent Splice Strand
Rpd3-RA 207..1771 17..1581 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:23 Download gff for BS06640.complete
Subject Subject Range Query Range Percent Splice Strand
Rpd3-RA 224..1789 17..1582 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:50 Download gff for BS06640.complete
Subject Subject Range Query Range Percent Splice Strand
Rpd3-RA 207..1771 17..1581 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:50 Download gff for BS06640.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4626940..4626982 17..59 100 -> Plus
3L 4627420..4627532 60..172 100 -> Plus
3L 4627611..4628856 173..1418 98 -> Plus
3L 4628952..4629114 1419..1581 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:27 Download gff for BS06640.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4626940..4626982 17..59 100 -> Plus
arm_3L 4627420..4627532 60..172 100 -> Plus
arm_3L 4627611..4628856 173..1418 98 -> Plus
arm_3L 4628952..4629114 1419..1581 99   Plus

BS06640.pep Sequence

Translation from 16 to 1581

> BS06640.pep
MQSHSKKRVCYYYDSDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKME
IYRPHKATADEMTKFHSDEYVRFLRSIRPDNMSEYNKQMQRFNVGEDCPV
FDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCY
VNDIVLGILELLKYHQRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKYG
EYFPGTGDLRDIGAGKGKYYAVNIPLRDGMDDDAYESIFVPIISKVMETF
QPAAVVLQCGADSLTGDRLGCFNLTVKGHGKCVEFVKKYNLPFLMVGGGG
YTIRNVSRCWTYETSVALAVEIANELPYNDYFEYFGPDFKLHISPSNMTN
QNTSEYLEKIKNRLFENLRMLPHAPGVQIQAIPEDAINDESDDEDKVDKD
DRLPQSDKDKRIVPENEYSDSEDEGEGGRRDNRSYKGQRKRPRLDKDTNS
NKASSETSSEIKDEKEKGDGADGEESTASNTNSNNNSNNKSDNDAGATAN
AGSGSGSGSGAGAKGAKENNI*

BS06640.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:51
Subject Length Description Subject Range Query Range Score Percent Strand
Rpd3-PA 521 CG7471-PA 1..521 1..521 2785 100 Plus
Hdac3-PA 438 CG2128-PA 4..429 7..424 1390 57.5 Plus
HDAC6-PD 883 CG6170-PD 458..776 8..318 329 30.2 Plus
HDAC6-PF 1022 CG6170-PF 540..858 8..318 329 30.2 Plus
HDAC6-PE 1108 CG6170-PE 513..831 8..318 329 30.2 Plus
HDAC6-PD 883 CG6170-PD 81..296 57..266 250 31.5 Plus
HDAC6-PF 1022 CG6170-PF 163..378 57..266 250 31.5 Plus