Clone Sequence Records
BS06640.3prime Sequence
952 bp (853 high quality bases) assembled on 2005-12-04
> BS06640.3prime
ATGGTCTAGAAAGCTTTCAAATGTTGTTCTCCTTGGCGCCCTTGGCCCCG
GCACCGGAACCTGATCCCGAACCGGATCCGGCATTAGCTGTCGCTCCGGC
ATCATTATCGCTCTTGTTGTTACTGTTGTTGTTGCTATTGGTATTAGACG
CCGTCGACTCCTCGCCATCAGCTCCGTCGCCCTTTTCCTTTTCGTCCTTG
ATCTCGCTGGACGTCTCTGAGGATGCCTTGTTGCTGTTGGTGTCCTTGTC
GAGACGCGGCCGCTTCCGCTGACCCTTGTACGAACGGTTATCCCTCCGAC
CGCCCTCGCCCTCATCCTCCGAATCGGAGTACTCGTTCTCGGGCACAATG
CGCTTGTCCTTGTCGCTCTGCGGCAGGCGATCATCCTTGTCGACCTTGTC
CTCGTCGTCGGACTCATCGTTGATGGCATCCTCGGGAATCGCTTGGATTT
GAACGCCCGGAGCGTGAGGCAGCATGCGCAGGTTCTCGAACAGACGGTTC
TTGATCTTCTCCAGGTACTCGGATGTATTCTGATTCGTCATATTGCTGGG
ACTAATGTGCAGCTTAAAATCGGGCCCAAAGTACTCGAAGTAATCGTTGT
AGGGCAGTTCGTTGGCTATCTCCACGGCCAGTGCAACGGAGGTCTCATAG
GTCCAGCAGCGGGATACATTACGAATGGTATAACCACCACCGCCGACCAT
CAGGAATGGCAGATTATATTTCTTCACGAACTCCACGCATTTGCCGTGAC
CCTTGACGGTGAGATTGAAGCAACCTAACCGATCGCCAGTCAGCGAATCG
GCGCCACACTGCAGCACCACGGCTGCCGGCTGGGATGTTTCCATCACCTT
GCTGATAATGGGCACAATATGCTCTCGTACGCATCATCATCCATGCCATC
GCGCAGGGGTATATTAACCGCATAATACTTTCCCTTTGCGGCGCCATGTC
TC
BS06640.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7471-PA | 1566 | Rpd3-RA | 716..1566 | 867..17 | 4055 | 99 | Minus |
CG7471-PA | 1566 | Rpd3-RA | 646..716 | 936..866 | 280 | 95.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:53:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpd3-RA | 2124 | CG7471-RA | 835..1772 | 952..17 | 4445 | 98.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:53:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4628090..4628857 | 946..180 | 3610 | 98.3 | Minus |
3L | 28110227 | 3L | 4628951..4629115 | 181..17 | 810 | 99.4 | Minus |
Blast to na_te.dros performed 2015-02-12 00:53:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2380..2415 | 145..110 | 126 | 83.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2391 | 142..81 | 114 | 66.7 | Minus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 523..559 | 142..106 | 113 | 78.4 | Minus |
BS06640.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:47:37 Download gff for
BS06640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpd3-PA | 629..1566 | 17..952 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:28:53 Download gff for
BS06640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7471-PA | 629..1566 | 17..952 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:48:29 Download gff for
BS06640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpd3-RA | 835..1772 | 17..952 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:21:43 Download gff for
BS06640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpd3-RA | 835..1772 | 17..952 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:21:43 Download gff for
BS06640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4628083..4628856 | 181..952 | 98 | -> | Minus |
3L | 4628952..4629115 | 17..180 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:48:29 Download gff for
BS06640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4628083..4628856 | 181..952 | 98 | -> | Minus |
arm_3L | 4628952..4629115 | 17..180 | 99 | | Minus |
BS06640.5prime Sequence
900 bp (755 high quality bases) assembled on 2005-12-04
> BS06640.5prime
GAAGTTATCAGTCGACATGCAGTCTCACAGCAAAAAGCGCGTTTGTTACT
ACTACGACAGCGACATTGGCAACTACTACTATGGCCAGGGTCATCCCATG
AAGCCCCATCGCATACGCATGACCCACAACCTGCTGCTCAACTATGGGCT
CTATCGAAAAATGGAAATATACCGTCCCCATAAAGCCACTGCCGATGAGA
TGACCAAGTTCCACTCGGACGAGTACGTCCGGTTCTTGCGATCCATTCGG
CCGGACAACATGTCGGAGTACAACAAGCAGATGCAGCGATTCAATGTCGG
CGAAGATTGTCCCGTCTTCGATGGACTATACGAGTTTTGCCAACTCTCCG
CCGGAGGATCCGTAGCTGCGGCCGTAAAACTGAATAAGCAAGCCTCGGAG
ATTTGCATCAATTGGGGCGGTGGGCTGCATCACGCCAAAAAATCGGAGGC
CTCGGGCTTCTGCTACGTCAACGACATTGTTCTGGGAATTCTGGAACTGC
TTAAATACCATCAGCGTGTTCTCTACATAGATATAGACGTCCATCACGGC
GATGGCGTGGAGGAGGCGTTCTATACCACCGATCGTGTGATGACTGTCAG
CTTCCACAAGTACGGAGAGTATTTCCCGGGCACCGGCGATCTGCGAGACA
TTGGCGCCGGCAAGGGAAAGTATTATGCGGTTAATATACCCCTGCGCGAT
GGCATGGATGATGATGCGTACGAGAGCATATTTGTGCCCATTATCAGCAA
GGTGATGGAAACATTCCAGCCGGCAGCCGTGGTGCTGCAGTGTGGCGCCG
ATTCGCTGACTGGCGATCGGTTAGGTTGCTTTCATCTCACCGTCAAGGGT
CACGGCAAATGCGTGGAAGTCGTGAAGAAATATAATCTGCCATTCCTGAT
BS06640.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7471-PA | 1566 | Rpd3-RA | 1..884 | 17..900 | 4045 | 98.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:34:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpd3-RA | 2124 | CG7471-RA | 207..1090 | 17..900 | 4195 | 98.3 | Plus |
Hdac3-RA | 1660 | CG2128-RA | 689..880 | 425..616 | 285 | 77.2 | Plus |
CG45100-RA | 1660 | CG45100-RA | 689..880 | 425..616 | 285 | 77.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:34:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4627611..4628338 | 173..900 | 3415 | 97.9 | Plus |
3L | 28110227 | 3L | 4627420..4627532 | 60..172 | 565 | 100 | Plus |
3R | 32079331 | 3R | 5473590..5473781 | 616..425 | 285 | 76.6 | Minus |
3L | 28110227 | 3L | 4626940..4626983 | 17..60 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:34:20 has no hits.
BS06640.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:47:38 Download gff for
BS06640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpd3-PA | 1..884 | 17..900 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:28:55 Download gff for
BS06640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7471-PA | 1..884 | 17..900 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:15:20 Download gff for
BS06640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpd3-RA | 207..1090 | 17..900 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:44:08 Download gff for
BS06640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpd3-RA | 207..1090 | 17..900 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:44:08 Download gff for
BS06640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4626940..4626982 | 17..59 | 100 | -> | Plus |
3L | 4627420..4627532 | 60..172 | 100 | -> | Plus |
3L | 4627611..4628338 | 173..900 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:15:20 Download gff for
BS06640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4626940..4626982 | 17..59 | 100 | -> | Plus |
arm_3L | 4627420..4627532 | 60..172 | 100 | -> | Plus |
arm_3L | 4627611..4628338 | 173..900 | 97 | | Plus |
BS06640.complete Sequence
1598 bp (1598 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635573
> BS06640.complete
GAAGTTATCAGTCGACATGCAGTCTCACAGCAAAAAGCGCGTTTGTTACT
ACTACGACAGCGACATTGGCAACTACTACTATGGCCAGGGTCATCCCATG
AAGCCCCATCGCATACGCATGACCCACAACCTGCTGCTCAACTATGGGCT
CTATCGAAAAATGGAAATATACCGTCCCCATAAAGCCACTGCCGATGAGA
TGACCAAGTTCCACTCGGACGAGTACGTCCGGTTCTTGCGATCCATTCGG
CCGGACAACATGTCGGAGTACAACAAGCAGATGCAGCGATTCAATGTCGG
CGAAGATTGTCCCGTCTTCGATGGACTATACGAGTTTTGCCAACTCTCCG
CCGGAGGATCCGTAGCTGCGGCCGTAAAACTGAATAAGCAAGCCTCGGAG
ATTTGCATCAATTGGGGCGGTGGGCTGCATCACGCCAAAAAATCGGAGGC
CTCGGGCTTCTGCTACGTCAACGACATTGTTCTGGGAATTCTGGAACTGC
TTAAATACCATCAGCGTGTTCTCTACATAGATATAGACGTCCATCACGGC
GATGGCGTGGAGGAGGCGTTCTATACCACCGATCGTGTGATGACTGTCAG
CTTCCACAAGTACGGAGAGTATTTCCCGGGCACCGGCGATCTGCGAGACA
TTGGCGCCGGCAAGGGAAAGTATTATGCGGTTAATATACCCCTGCGCGAT
GGCATGGATGATGATGCGTACGAGAGCATATTTGTGCCCATTATCAGCAA
GGTGATGGAAACATTCCAGCCGGCAGCCGTGGTGCTGCAGTGTGGCGCCG
ATTCGCTGACTGGCGATCGGTTAGGTTGCTTCAATCTCACCGTCAAGGGT
CACGGCAAATGCGTGGAGTTCGTGAAGAAATATAATCTGCCATTCCTGAT
GGTCGGCGGTGGTGGTTATACCATTCGTAATGTATCCCGCTGCTGGACCT
ATGAGACCTCCGTTGCACTGGCCGTGGAGATAGCCAACGAACTGCCCTAC
AACGATTACTTCGAGTACTTTGGGCCCGATTTTAAGCTGCACATTAGTCC
CAGCAATATGACGAATCAGAATACATCCGAGTACCTGGAGAAGATCAAGA
ACCGTCTGTTCGAGAACCTGCGCATGCTGCCTCACGCTCCGGGCGTTCAA
ATCCAAGCGATTCCCGAGGATGCCATCAACGATGAGTCCGACGACGAGGA
CAAGGTCGACAAGGATGATCGCCTGCCGCAGAGCGACAAGGACAAGCGCA
TTGTGCCCGAGAACGAGTACTCCGATTCGGAGGATGAGGGCGAGGGCGGT
CGGAGGGATAACCGTTCGTACAAGGGTCAGCGGAAGCGGCCGCGTCTCGA
CAAGGACACCAACAGCAACAAGGCATCCTCAGAGACGTCCAGCGAGATCA
AGGACGAAAAGGAAAAGGGCGACGGAGCTGATGGCGAGGAGTCGACGGCG
TCTAATACCAATAGCAACAACAACAGTAACAACAAGAGCGATAATGATGC
CGGAGCGACAGCTAATGCCGGATCCGGTTCGGGATCAGGTTCCGGTGCCG
GGGCCAAGGGCGCCAAGGAGAACAACATTTGAAAGCTTTCTAGACCAT
BS06640.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:31:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpd3-RA | 1566 | CG7471-PA | 1..1566 | 17..1582 | 7620 | 99.1 | Plus |
Hdac3-RA | 1317 | CG2128-PA | 412..603 | 425..616 | 285 | 76.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:31:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpd3-RA | 2124 | CG7471-RA | 207..1772 | 17..1582 | 7620 | 99.1 | Plus |
Hdac3-RA | 1660 | CG2128-RA | 689..880 | 425..616 | 285 | 76.6 | Plus |
CG45100-RA | 1660 | CG45100-RA | 689..880 | 425..616 | 285 | 76.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:31:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4627611..4628857 | 173..1419 | 6040 | 99 | Plus |
3L | 28110227 | 3L | 4628951..4629115 | 1418..1582 | 810 | 99.4 | Plus |
3L | 28110227 | 3L | 4627420..4627532 | 60..172 | 565 | 100 | Plus |
3R | 32079331 | 3R | 5473590..5473781 | 616..425 | 285 | 76.6 | Minus |
3L | 28110227 | 3L | 4626940..4626983 | 17..60 | 220 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 15:31:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2380..2415 | 1454..1489 | 126 | 83.3 | Plus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 523..559 | 1457..1493 | 113 | 78.4 | Plus |
BS06640.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:23 Download gff for
BS06640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpd3-RA | 1..1566 | 17..1582 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:18 Download gff for
BS06640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpd3-RA | 224..1789 | 17..1582 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:27 Download gff for
BS06640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpd3-RA | 207..1771 | 17..1581 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:23 Download gff for
BS06640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpd3-RA | 224..1789 | 17..1582 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:50 Download gff for
BS06640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpd3-RA | 207..1771 | 17..1581 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:50 Download gff for
BS06640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4626940..4626982 | 17..59 | 100 | -> | Plus |
3L | 4627420..4627532 | 60..172 | 100 | -> | Plus |
3L | 4627611..4628856 | 173..1418 | 98 | -> | Plus |
3L | 4628952..4629114 | 1419..1581 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:27 Download gff for
BS06640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4626940..4626982 | 17..59 | 100 | -> | Plus |
arm_3L | 4627420..4627532 | 60..172 | 100 | -> | Plus |
arm_3L | 4627611..4628856 | 173..1418 | 98 | -> | Plus |
arm_3L | 4628952..4629114 | 1419..1581 | 99 | | Plus |
BS06640.pep Sequence
Translation from 16 to 1581
> BS06640.pep
MQSHSKKRVCYYYDSDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKME
IYRPHKATADEMTKFHSDEYVRFLRSIRPDNMSEYNKQMQRFNVGEDCPV
FDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCY
VNDIVLGILELLKYHQRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKYG
EYFPGTGDLRDIGAGKGKYYAVNIPLRDGMDDDAYESIFVPIISKVMETF
QPAAVVLQCGADSLTGDRLGCFNLTVKGHGKCVEFVKKYNLPFLMVGGGG
YTIRNVSRCWTYETSVALAVEIANELPYNDYFEYFGPDFKLHISPSNMTN
QNTSEYLEKIKNRLFENLRMLPHAPGVQIQAIPEDAINDESDDEDKVDKD
DRLPQSDKDKRIVPENEYSDSEDEGEGGRRDNRSYKGQRKRPRLDKDTNS
NKASSETSSEIKDEKEKGDGADGEESTASNTNSNNNSNNKSDNDAGATAN
AGSGSGSGSGAGAKGAKENNI*
BS06640.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpd3-PA | 521 | CG7471-PA | 1..521 | 1..521 | 2785 | 100 | Plus |
Hdac3-PA | 438 | CG2128-PA | 4..429 | 7..424 | 1390 | 57.5 | Plus |
HDAC6-PD | 883 | CG6170-PD | 458..776 | 8..318 | 329 | 30.2 | Plus |
HDAC6-PF | 1022 | CG6170-PF | 540..858 | 8..318 | 329 | 30.2 | Plus |
HDAC6-PE | 1108 | CG6170-PE | 513..831 | 8..318 | 329 | 30.2 | Plus |
HDAC6-PD | 883 | CG6170-PD | 81..296 | 57..266 | 250 | 31.5 | Plus |
HDAC6-PF | 1022 | CG6170-PF | 163..378 | 57..266 | 250 | 31.5 | Plus |