Clone BS06642 Report

Search the DGRC for BS06642

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:66
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG11597-RA
Protein status:BS06642.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06642.3prime Sequence

983 bp (836 high quality bases) assembled on 2005-12-04

> BS06642.3prime
ATGGTCTAGAAAGCTTTCATTGAAAAAATTGACGACAACGCTTTTTCGGT
TTCCTTGGCTGCGGTTTGGAGTGCAGCGCCTGCGCTTCGAACACTTTAAA
ATCATAATCGCCAGCAGCATTTAAGCGCAGAATAGCCGCTTTGTTGCCGC
AGCGATAGCAATAGTTGGGTGCTGACCATATGGTAACAAGAAGTTGGCCA
AAATGCCAACGGAAGCCATCCTGGGCCAACTGATGAGCGCGGCATATGAG
AGAGATTCCATTTGCGCGCGTAAACTCCTCAACAACATCGCCACCGAAGA
GTTTTCCATGTCCTCGTGGCGATGCCGCCCATCCAGGCGCTTCCTGTGGA
TCGCTCCAGAGAAGATCAGCTATAATTCCACTTTCGGGTATCTCGTGGCA
GCGATCCAGGCTACGTAAGTCATCCAATCGTTGCATATCCGGCGACAGGC
CGCCATGAACACACAATATATTGCCATCAATGATAGCCGCCAGCGGCAAG
AGATCGAAGACACGGCAGCACATCCTCCAGACATTCGCAGAGCCGTACCG
CGAAAGGCACTCCTCGTAGAATCCATAGGATCGAGTGGCACTGCGGCACT
CATGATTGCCCCGTAGCAGGCTAACTTGTGCCGGATGTCGCACCTTGAGA
GCAGCTAGCAGAAGAAAGGTCTCCACGCTGTTCTTGCCCCGATCCACCAG
GTCACCCAGGAACAAGTAGCGATGCTCCTGCACCGAACCGCCCAATTCCA
GCAGGTGGAGCAGATCCTCGAACTGACCGTGAATGTCACCGCATACGATC
TGCGGACTCTGCAGGCTCAGTAGATTCGACTCGCCGACGAGCAAGTCACT
CAACGAGCGGCACAGCTGGCGAACCCTCCACTCCTGGGCAGGCGGACCGG
CACATGGCGCAGATTTTCCACCAGACGATCCGCATCATTCATTGCCTCGG
GGCACAAGGCAGACATCATGTCGACTGATAACT

BS06642.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG11597-PA 954 CG11597-RA 96..954 875..17 4295 100 Minus
CG11597-PB 954 CG11597-RB 96..954 875..17 4295 100 Minus
CG11597-PA 954 CG11597-RA 1..87 969..883 435 100 Minus
CG11597-PB 954 CG11597-RB 1..87 969..883 435 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:54:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11597-RC 1806 CG11597-RC 712..1665 969..17 4700 99.7 Minus
CG11597-RB 1686 CG11597-RB 592..1545 969..17 4700 99.7 Minus
CG11597-RA 1449 CG11597-RA 355..1308 969..17 4700 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11820479..11821432 17..969 4675 99.6 Plus
Blast to na_te.dros performed on 2015-02-03 12:54:35 has no hits.

BS06642.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:47:41 Download gff for BS06642.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11597-PA 1..954 17..969 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:28:59 Download gff for BS06642.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11597-PB 1..954 17..969 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:55:04 Download gff for BS06642.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11597-RA 325..1293 10..981 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:45:28 Download gff for BS06642.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11597-RA 343..1311 10..981 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:45:28 Download gff for BS06642.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11820476..11821444 10..981 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:55:04 Download gff for BS06642.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11813576..11814544 10..981 98   Plus

BS06642.5prime Sequence

862 bp (860 high quality bases) assembled on 2005-12-04

> BS06642.5prime
GAAGTTATCAGTCGACATGATGTCTGCCTTGTGCCCCGAGGCAATGAATG
ATGCGGATCGTCTGGTGGAAAATCTGCGCCATGTGCCGGTCCGCCTGCCC
AGGGAGTTGGAGGTTCGCCAGCTGTGCCGCTCGTTGAGTGACTTGCTCGT
CGGCGAGTCGAATCTACTGAGCCTGCAGAGTCCGCAGATCGTATGCGGTG
ACATTCACGGTCAGTTCGAGGATCTGCTCCACCTGCTGGAATTGGGCGGT
TCGGTGCAGGAGCATCGCTACTTGTTCCTGGGTGACCTGGTGGATCGGGG
CAAGAACAGCGTGGAGACCTTTCTTCTGCTAGCTGCTCTCAAGGTGCGAC
ATCCGGCACAAGTTAGCCTGCTACGGGGCAATCATGAGTGCCGCAGTGCC
ACTCGATCCTATGGATTCTACGAGGAGTGCCTTTCGCGGTACGGCTCTGC
GAATGTCTGGAGGATGTGCTGCCGTGTCTTCGATCTCTTGCCGCTGGCGG
CTATCATTGATGGCAATATATTGTGTGTTCATGGCGGCCTGTCGCCGGAT
ATGCAACGATTGGATGACTTACGTAGCCTGGATCGCTGCCACGAGATACC
CGAAAGTGGAATTATAGCTGATCTTCTCTGGAGCGATCCACAGGAAGCGC
CTGGATGGGCGGCATCGCCACGAGGACATGGAAAACTCTTCGGTGGCGAT
GTTGTTGAGGAGTTTACGCGCGCAAATGGAATCTCTCTCATATGCCGCGC
TCATCAGTTGGCCCAGGATGGCTTCCGTTGGCATTTTGGCCAACTTCTTG
TTACCATATGGTCAGCACCCAACTATTGCTATCGCTGCGGCAACAAAGCG
GCTATTCTGCGC

BS06642.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG11597-PA 954 CG11597-RA 1..846 17..862 4230 100 Plus
CG11597-PB 954 CG11597-RB 1..846 17..862 4230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:52:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG11597-RC 1806 CG11597-RC 712..1557 17..862 4230 100 Plus
CG11597-RB 1686 CG11597-RB 592..1437 17..862 4230 100 Plus
CG11597-RA 1449 CG11597-RA 355..1200 17..862 4230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:52:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11820587..11821432 862..17 4230 100 Minus
Blast to na_te.dros performed on 2015-02-12 12:52:54 has no hits.

BS06642.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:47:42 Download gff for BS06642.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11597-PA 1..846 17..862 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:29:01 Download gff for BS06642.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11597-PB 1..846 17..862 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:05:01 Download gff for BS06642.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11597-RA 325..1182 5..862 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:31:29 Download gff for BS06642.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11597-RA 343..1200 5..862 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:31:29 Download gff for BS06642.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11820587..11821444 5..862 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:05:01 Download gff for BS06642.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11813687..11814544 5..862 99   Minus

BS06642.complete Sequence

986 bp (986 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635574

> BS06642.complete
GAAGTTATCAGTCGACATGATGTCTGCCTTGTGCCCCGAGGCAATGAATG
ATGCGGATCGTCTGGTGGAAAATCTGCGCCATGTGCCGGTCCGCCTGCCC
AGGGAGTTGGAGGTTCGCCAGCTGTGCCGCTCGTTGAGTGACTTGCTCGT
CGGCGAGTCGAATCTACTGAGCCTGCAGAGTCCGCAGATCGTATGCGGTG
ACATTCACGGTCAGTTCGAGGATCTGCTCCACCTGCTGGAATTGGGCGGT
TCGGTGCAGGAGCATCGCTACTTGTTCCTGGGTGACCTGGTGGATCGGGG
CAAGAACAGCGTGGAGACCTTTCTTCTGCTAGCTGCTCTCAAGGTGCGAC
ATCCGGCACAAGTTAGCCTGCTACGGGGCAATCATGAGTGCCGCAGTGCC
ACTCGATCCTATGGATTCTACGAGGAGTGCCTTTCGCGGTACGGCTCTGC
GAATGTCTGGAGGATGTGCTGCCGTGTCTTCGATCTCTTGCCGCTGGCGG
CTATCATTGATGGCAATATATTGTGTGTTCATGGCGGCCTGTCGCCGGAT
ATGCAACGATTGGATGACTTACGTAGCCTGGATCGCTGCCACGAGATACC
CGAAAGTGGAATTATAGCTGATCTTCTCTGGAGCGATCCACAGGAAGCGC
CTGGATGGGCGGCATCGCCACGAGGACATGGAAAACTCTTCGGTGGCGAT
GTTGTTGAGGAGTTTACGCGCGCAAATGGAATCTCTCTCATATGCCGCGC
TCATCAGTTGGCCCAGGATGGCTTCCGTTGGCATTTTGGCCAACTTCTTG
TTACCATATGGTCAGCACCCAACTATTGCTATCGCTGCGGCAACAAAGCG
GCTATTCTGCGCTTAAATGCTGCTGGCGATTATGATTTTAAAGTGTTCGA
AGCGCAGGCGCTGCACTCCAAACCGCAGCCAAGGAAACCGAAAAAGCGTT
GTCGTCAATTTTTTCAATGAAAGCTTTCTAGACCAT

BS06642.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG11597-RC 954 CG11597-PC 1..954 17..970 4770 100 Plus
CG11597-RB 954 CG11597-PB 1..954 17..970 4770 100 Plus
CG11597-RA 954 CG11597-PA 1..954 17..970 4770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:38:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG11597-RC 1806 CG11597-RC 712..1665 17..970 4770 100 Plus
CG11597-RB 1686 CG11597-RB 592..1545 17..970 4770 100 Plus
CG11597-RA 1449 CG11597-RA 355..1308 17..970 4770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:38:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11820479..11821432 970..17 4770 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:38:04 has no hits.

BS06642.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:24 Download gff for BS06642.complete
Subject Subject Range Query Range Percent Splice Strand
CG11597-RB 1..954 17..970 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:19 Download gff for BS06642.complete
Subject Subject Range Query Range Percent Splice Strand
CG11597-RB 562..1530 5..977 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:02 Download gff for BS06642.complete
Subject Subject Range Query Range Percent Splice Strand
CG11597-RA 337..1289 17..969 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:25 Download gff for BS06642.complete
Subject Subject Range Query Range Percent Splice Strand
CG11597-RB 562..1530 5..977 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:03 Download gff for BS06642.complete
Subject Subject Range Query Range Percent Splice Strand
CG11597-RA 355..1307 17..969 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:03 Download gff for BS06642.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11820480..11821432 17..969 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:02 Download gff for BS06642.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11813580..11814532 17..969 100   Minus

BS06642.pep Sequence

Translation from 16 to 969

> BS06642.pep
MMSALCPEAMNDADRLVENLRHVPVRLPRELEVRQLCRSLSDLLVGESNL
LSLQSPQIVCGDIHGQFEDLLHLLELGGSVQEHRYLFLGDLVDRGKNSVE
TFLLLAALKVRHPAQVSLLRGNHECRSATRSYGFYEECLSRYGSANVWRM
CCRVFDLLPLAAIIDGNILCVHGGLSPDMQRLDDLRSLDRCHEIPESGII
ADLLWSDPQEAPGWAASPRGHGKLFGGDVVEEFTRANGISLICRAHQLAQ
DGFRWHFGQLLVTIWSAPNYCYRCGNKAAILRLNAAGDYDFKVFEAQALH
SKPQPRKPKKRCRQFFQ*

BS06642.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG11597-PC 317 CG11597-PC 1..317 1..317 1694 100 Plus
CG11597-PB 317 CG11597-PB 1..317 1..317 1694 100 Plus
CG11597-PA 317 CG11597-PA 1..317 1..317 1694 100 Plus
Pp4-19C-PH 307 CG32505-PH 5..299 11..307 913 56.6 Plus
Pp4-19C-PG 307 CG32505-PG 5..299 11..307 913 56.6 Plus