Clone Sequence Records
BS06642.3prime Sequence
983 bp (836 high quality bases) assembled on 2005-12-04
> BS06642.3prime
ATGGTCTAGAAAGCTTTCATTGAAAAAATTGACGACAACGCTTTTTCGGT
TTCCTTGGCTGCGGTTTGGAGTGCAGCGCCTGCGCTTCGAACACTTTAAA
ATCATAATCGCCAGCAGCATTTAAGCGCAGAATAGCCGCTTTGTTGCCGC
AGCGATAGCAATAGTTGGGTGCTGACCATATGGTAACAAGAAGTTGGCCA
AAATGCCAACGGAAGCCATCCTGGGCCAACTGATGAGCGCGGCATATGAG
AGAGATTCCATTTGCGCGCGTAAACTCCTCAACAACATCGCCACCGAAGA
GTTTTCCATGTCCTCGTGGCGATGCCGCCCATCCAGGCGCTTCCTGTGGA
TCGCTCCAGAGAAGATCAGCTATAATTCCACTTTCGGGTATCTCGTGGCA
GCGATCCAGGCTACGTAAGTCATCCAATCGTTGCATATCCGGCGACAGGC
CGCCATGAACACACAATATATTGCCATCAATGATAGCCGCCAGCGGCAAG
AGATCGAAGACACGGCAGCACATCCTCCAGACATTCGCAGAGCCGTACCG
CGAAAGGCACTCCTCGTAGAATCCATAGGATCGAGTGGCACTGCGGCACT
CATGATTGCCCCGTAGCAGGCTAACTTGTGCCGGATGTCGCACCTTGAGA
GCAGCTAGCAGAAGAAAGGTCTCCACGCTGTTCTTGCCCCGATCCACCAG
GTCACCCAGGAACAAGTAGCGATGCTCCTGCACCGAACCGCCCAATTCCA
GCAGGTGGAGCAGATCCTCGAACTGACCGTGAATGTCACCGCATACGATC
TGCGGACTCTGCAGGCTCAGTAGATTCGACTCGCCGACGAGCAAGTCACT
CAACGAGCGGCACAGCTGGCGAACCCTCCACTCCTGGGCAGGCGGACCGG
CACATGGCGCAGATTTTCCACCAGACGATCCGCATCATTCATTGCCTCGG
GGCACAAGGCAGACATCATGTCGACTGATAACT
BS06642.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11597-PA | 954 | CG11597-RA | 96..954 | 875..17 | 4295 | 100 | Minus |
CG11597-PB | 954 | CG11597-RB | 96..954 | 875..17 | 4295 | 100 | Minus |
CG11597-PA | 954 | CG11597-RA | 1..87 | 969..883 | 435 | 100 | Minus |
CG11597-PB | 954 | CG11597-RB | 1..87 | 969..883 | 435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:54:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11597-RC | 1806 | CG11597-RC | 712..1665 | 969..17 | 4700 | 99.7 | Minus |
CG11597-RB | 1686 | CG11597-RB | 592..1545 | 969..17 | 4700 | 99.7 | Minus |
CG11597-RA | 1449 | CG11597-RA | 355..1308 | 969..17 | 4700 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:54:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11820479..11821432 | 17..969 | 4675 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-03 12:54:35 has no hits.
BS06642.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:47:41 Download gff for
BS06642.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11597-PA | 1..954 | 17..969 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:28:59 Download gff for
BS06642.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11597-PB | 1..954 | 17..969 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:55:04 Download gff for
BS06642.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11597-RA | 325..1293 | 10..981 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:45:28 Download gff for
BS06642.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11597-RA | 343..1311 | 10..981 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:45:28 Download gff for
BS06642.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11820476..11821444 | 10..981 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:55:04 Download gff for
BS06642.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11813576..11814544 | 10..981 | 98 | | Plus |
BS06642.5prime Sequence
862 bp (860 high quality bases) assembled on 2005-12-04
> BS06642.5prime
GAAGTTATCAGTCGACATGATGTCTGCCTTGTGCCCCGAGGCAATGAATG
ATGCGGATCGTCTGGTGGAAAATCTGCGCCATGTGCCGGTCCGCCTGCCC
AGGGAGTTGGAGGTTCGCCAGCTGTGCCGCTCGTTGAGTGACTTGCTCGT
CGGCGAGTCGAATCTACTGAGCCTGCAGAGTCCGCAGATCGTATGCGGTG
ACATTCACGGTCAGTTCGAGGATCTGCTCCACCTGCTGGAATTGGGCGGT
TCGGTGCAGGAGCATCGCTACTTGTTCCTGGGTGACCTGGTGGATCGGGG
CAAGAACAGCGTGGAGACCTTTCTTCTGCTAGCTGCTCTCAAGGTGCGAC
ATCCGGCACAAGTTAGCCTGCTACGGGGCAATCATGAGTGCCGCAGTGCC
ACTCGATCCTATGGATTCTACGAGGAGTGCCTTTCGCGGTACGGCTCTGC
GAATGTCTGGAGGATGTGCTGCCGTGTCTTCGATCTCTTGCCGCTGGCGG
CTATCATTGATGGCAATATATTGTGTGTTCATGGCGGCCTGTCGCCGGAT
ATGCAACGATTGGATGACTTACGTAGCCTGGATCGCTGCCACGAGATACC
CGAAAGTGGAATTATAGCTGATCTTCTCTGGAGCGATCCACAGGAAGCGC
CTGGATGGGCGGCATCGCCACGAGGACATGGAAAACTCTTCGGTGGCGAT
GTTGTTGAGGAGTTTACGCGCGCAAATGGAATCTCTCTCATATGCCGCGC
TCATCAGTTGGCCCAGGATGGCTTCCGTTGGCATTTTGGCCAACTTCTTG
TTACCATATGGTCAGCACCCAACTATTGCTATCGCTGCGGCAACAAAGCG
GCTATTCTGCGC
BS06642.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11597-PA | 954 | CG11597-RA | 1..846 | 17..862 | 4230 | 100 | Plus |
CG11597-PB | 954 | CG11597-RB | 1..846 | 17..862 | 4230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:52:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11597-RC | 1806 | CG11597-RC | 712..1557 | 17..862 | 4230 | 100 | Plus |
CG11597-RB | 1686 | CG11597-RB | 592..1437 | 17..862 | 4230 | 100 | Plus |
CG11597-RA | 1449 | CG11597-RA | 355..1200 | 17..862 | 4230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:52:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11820587..11821432 | 862..17 | 4230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:52:54 has no hits.
BS06642.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:47:42 Download gff for
BS06642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11597-PA | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:29:01 Download gff for
BS06642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11597-PB | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:05:01 Download gff for
BS06642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11597-RA | 325..1182 | 5..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:31:29 Download gff for
BS06642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11597-RA | 343..1200 | 5..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:31:29 Download gff for
BS06642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11820587..11821444 | 5..862 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:05:01 Download gff for
BS06642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11813687..11814544 | 5..862 | 99 | | Minus |
BS06642.complete Sequence
986 bp (986 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635574
> BS06642.complete
GAAGTTATCAGTCGACATGATGTCTGCCTTGTGCCCCGAGGCAATGAATG
ATGCGGATCGTCTGGTGGAAAATCTGCGCCATGTGCCGGTCCGCCTGCCC
AGGGAGTTGGAGGTTCGCCAGCTGTGCCGCTCGTTGAGTGACTTGCTCGT
CGGCGAGTCGAATCTACTGAGCCTGCAGAGTCCGCAGATCGTATGCGGTG
ACATTCACGGTCAGTTCGAGGATCTGCTCCACCTGCTGGAATTGGGCGGT
TCGGTGCAGGAGCATCGCTACTTGTTCCTGGGTGACCTGGTGGATCGGGG
CAAGAACAGCGTGGAGACCTTTCTTCTGCTAGCTGCTCTCAAGGTGCGAC
ATCCGGCACAAGTTAGCCTGCTACGGGGCAATCATGAGTGCCGCAGTGCC
ACTCGATCCTATGGATTCTACGAGGAGTGCCTTTCGCGGTACGGCTCTGC
GAATGTCTGGAGGATGTGCTGCCGTGTCTTCGATCTCTTGCCGCTGGCGG
CTATCATTGATGGCAATATATTGTGTGTTCATGGCGGCCTGTCGCCGGAT
ATGCAACGATTGGATGACTTACGTAGCCTGGATCGCTGCCACGAGATACC
CGAAAGTGGAATTATAGCTGATCTTCTCTGGAGCGATCCACAGGAAGCGC
CTGGATGGGCGGCATCGCCACGAGGACATGGAAAACTCTTCGGTGGCGAT
GTTGTTGAGGAGTTTACGCGCGCAAATGGAATCTCTCTCATATGCCGCGC
TCATCAGTTGGCCCAGGATGGCTTCCGTTGGCATTTTGGCCAACTTCTTG
TTACCATATGGTCAGCACCCAACTATTGCTATCGCTGCGGCAACAAAGCG
GCTATTCTGCGCTTAAATGCTGCTGGCGATTATGATTTTAAAGTGTTCGA
AGCGCAGGCGCTGCACTCCAAACCGCAGCCAAGGAAACCGAAAAAGCGTT
GTCGTCAATTTTTTCAATGAAAGCTTTCTAGACCAT
BS06642.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:38:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11597-RC | 954 | CG11597-PC | 1..954 | 17..970 | 4770 | 100 | Plus |
CG11597-RB | 954 | CG11597-PB | 1..954 | 17..970 | 4770 | 100 | Plus |
CG11597-RA | 954 | CG11597-PA | 1..954 | 17..970 | 4770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:38:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11597-RC | 1806 | CG11597-RC | 712..1665 | 17..970 | 4770 | 100 | Plus |
CG11597-RB | 1686 | CG11597-RB | 592..1545 | 17..970 | 4770 | 100 | Plus |
CG11597-RA | 1449 | CG11597-RA | 355..1308 | 17..970 | 4770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:38:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11820479..11821432 | 970..17 | 4770 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:38:04 has no hits.
BS06642.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:24 Download gff for
BS06642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11597-RB | 1..954 | 17..970 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:19 Download gff for
BS06642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11597-RB | 562..1530 | 5..977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:02 Download gff for
BS06642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11597-RA | 337..1289 | 17..969 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:25 Download gff for
BS06642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11597-RB | 562..1530 | 5..977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:03 Download gff for
BS06642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11597-RA | 355..1307 | 17..969 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:03 Download gff for
BS06642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11820480..11821432 | 17..969 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:02 Download gff for
BS06642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11813580..11814532 | 17..969 | 100 | | Minus |
BS06642.pep Sequence
Translation from 16 to 969
> BS06642.pep
MMSALCPEAMNDADRLVENLRHVPVRLPRELEVRQLCRSLSDLLVGESNL
LSLQSPQIVCGDIHGQFEDLLHLLELGGSVQEHRYLFLGDLVDRGKNSVE
TFLLLAALKVRHPAQVSLLRGNHECRSATRSYGFYEECLSRYGSANVWRM
CCRVFDLLPLAAIIDGNILCVHGGLSPDMQRLDDLRSLDRCHEIPESGII
ADLLWSDPQEAPGWAASPRGHGKLFGGDVVEEFTRANGISLICRAHQLAQ
DGFRWHFGQLLVTIWSAPNYCYRCGNKAAILRLNAAGDYDFKVFEAQALH
SKPQPRKPKKRCRQFFQ*
BS06642.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11597-PC | 317 | CG11597-PC | 1..317 | 1..317 | 1694 | 100 | Plus |
CG11597-PB | 317 | CG11597-PB | 1..317 | 1..317 | 1694 | 100 | Plus |
CG11597-PA | 317 | CG11597-PA | 1..317 | 1..317 | 1694 | 100 | Plus |
Pp4-19C-PH | 307 | CG32505-PH | 5..299 | 11..307 | 913 | 56.6 | Plus |
Pp4-19C-PG | 307 | CG32505-PG | 5..299 | 11..307 | 913 | 56.6 | Plus |