Clone BS06643 Report

Search the DGRC for BS06643

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:66
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCoIV-RA
Protein status:BS06643.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06643.3prime Sequence

579 bp (578 high quality bases) assembled on 2005-12-04

> BS06643.3prime
ATGGTCTAGAAAGCTTTTAGTTCTTCCACTTCTTGTTCTCGTAGTCCCAC
TTGGAGGTCAATCCGGTGACGGGGTTGATTTCCAGGTCGATGATGCGCTG
CAGCTGCGCCTTCTGGTGCTCCTCGTCGAAGGTAACGGGCAGCTCATCGT
ACACGAAGATGTTCATCAGTACGGCCACCCAGATGGCGGCGGCGCAGAAG
AGGAGTGAAACGCCCAGGTGGAGCTTCCACTCCCCGGATCCAGCCTGGAC
CTCGGCGATAGTCTGGCAGAAGCTGGCGCGGTACAGGGCCTTGATCTCCT
GGGTGCTGAGCTTCTTCCAGTCTCCCTGCTCCTTGGCGCGCAGAGCGTTG
ATCTCGTTGGTGGGCTCACGGAAGCGCACGGCGGGCAGAGGGTAGTCCAC
GCGATCCGCGTAGCAGGCGGTGCCGTTCCAGCCGTAGCCAACGATCTCCC
GCTTGCCGATCTTGTCCAGTGTGTGGACGGCGGCCACGCTGCCCACCTGG
GCACTCTTGGGCAGCTGAGAGGCCAGCTGGCGGAGCACAGCACTGTTGAG
TAGTCGCAGGGCCATGTCGACTGATAACT

BS06643.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG10664-PA 549 CG10664-RA 1..549 565..17 2720 99.8 Minus
CG10664-PB 549 CG10664-RB 1..549 565..17 2720 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:22:12
Subject Length Description Subject Range Query Range Score Percent Strand
CoIV-RD 1114 CG10664-RD 449..997 565..17 2730 99.8 Minus
CoIV-RC 818 CG10664-RC 92..640 565..17 2730 99.8 Minus
CoIV-RB 796 CG10664-RB 70..618 565..17 2730 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:22:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19959280..19959691 565..154 2060 100 Minus
2L 23513712 2L 19959750..19959887 154..17 675 99.3 Minus
Blast to na_te.dros performed on 2015-02-11 10:22:10 has no hits.

BS06643.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:47:43 Download gff for BS06643.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10664-PB 1..549 17..565 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:29:03 Download gff for BS06643.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10664-PB 1..549 17..565 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:06:27 Download gff for BS06643.3prime
Subject Subject Range Query Range Percent Splice Strand
CoIV-RB 65..622 13..572 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:20:52 Download gff for BS06643.3prime
Subject Subject Range Query Range Percent Splice Strand
CoIV-RB 65..622 13..572 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:20:52 Download gff for BS06643.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19959275..19959691 154..572 99 -> Minus
2L 19959751..19959891 13..153 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:06:27 Download gff for BS06643.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19959275..19959691 154..572 99 -> Minus
arm_2L 19959751..19959891 13..153 97   Minus

BS06643.5prime Sequence

579 bp (578 high quality bases) assembled on 2005-12-04

> BS06643.5prime
GAAGTTATCAGTCGACATGGCCCTGCGACTACTCAACAGTGCTGTGCTCC
GCCAGCTGGCCTCTCAGCTGCCCAAGAGTGCCCAGGTGGGCAGCGTGGCC
GCCGTCCACACACTGGACAAGATCGGCAAGCGGGAGATCGTTGGCTACGG
CTGGAACGGCACCGCCTGCTACGCGGATCGCGTGGACTACCCTCTGCCCG
CCGTGCGCTTCCGTGAGCCCACCAACGAGATCAACGCTCTGCGCGCCAAG
GAGCAGGGAGACTGGAAGAAGCTCAGCACCCAGGAGATCAAGGCCCTGTA
CCGCGCCAGCTTCTGCCAGACTATCGCCGAGGTCCAGGCTGGATCCGGGG
AGTGGAAGCTCCACCTGGGCGTTTCACTCCTCTTCTGCGCCGCCGCCATC
TGGGTGGCCGTACTGATGAACATCTTCGTGTACGATGAGCTGCCCGTTAC
CTTCGACGAGGAGCACCAGAAGGCGCAGCTGCAGCGCATCATCGACCTGG
AAATCAACCCCGTCACCGGATTGACCTCCAAGTGGGACTACGAGAACAAG
AAGTGGAAGAACTAAAAGCTTTCTAGACC

BS06643.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG10664-PA 549 CG10664-RA 1..549 17..565 2720 99.8 Plus
CG10664-PB 549 CG10664-RB 1..549 17..565 2720 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
CoIV-RD 1114 CG10664-RD 449..997 17..565 2730 99.8 Plus
CoIV-RC 818 CG10664-RC 92..640 17..565 2730 99.8 Plus
CoIV-RB 796 CG10664-RB 70..618 17..565 2730 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19959280..19959691 17..428 2060 100 Plus
2L 23513712 2L 19959750..19959887 428..565 675 99.3 Plus
Blast to na_te.dros performed on 2015-02-09 22:40:05 has no hits.

BS06643.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:47:44 Download gff for BS06643.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10664-PB 1..549 17..565 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:29:05 Download gff for BS06643.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10664-PB 1..549 17..565 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:27:06 Download gff for BS06643.5prime
Subject Subject Range Query Range Percent Splice Strand
CoIV-RB 65..622 10..569 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:47:20 Download gff for BS06643.5prime
Subject Subject Range Query Range Percent Splice Strand
CoIV-RB 65..622 10..569 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:47:20 Download gff for BS06643.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19959275..19959691 10..428 99 -> Plus
2L 19959751..19959891 429..569 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:27:06 Download gff for BS06643.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19959275..19959691 10..428 99 -> Plus
arm_2L 19959751..19959891 429..569 97   Plus

BS06643.complete Sequence

581 bp (581 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635575

> BS06643.complete
GAAGTTATCAGTCGACATGGCCCTGCGACTACTCAACAGTGCTGTGCTCC
GCCAGCTGGCCTCTCAGCTGCCCAAGAGTGCCCAGGTGGGCAGCGTGGCC
GCCGTCCACACACTGGACAAGATCGGCAAGCGGGAGATCGTTGGCTACGG
CTGGAACGGCACCGCCTGCTACGCGGATCGCGTGGACTACCCTCTGCCCG
CCGTGCGCTTCCGTGAGCCCACCAACGAGATCAACGCTCTGCGCGCCAAG
GAGCAGGGAGACTGGAAGAAGCTCAGCACCCAGGAGATCAAGGCCCTGTA
CCGCGCCAGCTTCTGCCAGACTATCGCCGAGGTCCAGGCTGGATCCGGGG
AGTGGAAGCTCCACCTGGGCGTTTCACTCCTCTTCTGCGCCGCCGCCATC
TGGGTGGCCGTACTGATGAACATCTTCGTGTACGATGAGCTGCCCGTTAC
CTTCGACGAGGAGCACCAGAAGGCGCAGCTGCAGCGCATCATCGACCTGG
AAATCAACCCCGTCACCGGATTGACCTCCAAGTGGGACTACGAGAACAAG
AAGTGGAAGAACTAAAAGCTTTCTAGACCAT

BS06643.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:01:38
Subject Length Description Subject Range Query Range Score Percent Strand
CoIV-RD 549 CG10664-PD 1..549 17..565 2730 99.8 Plus
CoIV-RC 549 CG10664-PC 1..549 17..565 2730 99.8 Plus
CoIV-RB 549 CG10664-PB 1..549 17..565 2730 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
CoIV-RD 1114 CG10664-RD 449..997 17..565 2730 99.8 Plus
CoIV-RC 818 CG10664-RC 92..640 17..565 2730 99.8 Plus
CoIV-RB 796 CG10664-RB 70..618 17..565 2730 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:01:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19959280..19959691 17..428 2060 100 Plus
2L 23513712 2L 19959750..19959887 428..565 675 99.3 Plus
Blast to na_te.dros performed on 2014-11-28 01:01:37 has no hits.

BS06643.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:25 Download gff for BS06643.complete
Subject Subject Range Query Range Percent Splice Strand
CG10664-RB 1..549 17..565 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:05 Download gff for BS06643.complete
Subject Subject Range Query Range Percent Splice Strand
CG10664-RA 62..619 10..569 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:47 Download gff for BS06643.complete
Subject Subject Range Query Range Percent Splice Strand
CoIV-RB 70..616 17..563 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:25 Download gff for BS06643.complete
Subject Subject Range Query Range Percent Splice Strand
CG10664-RB 41..598 10..569 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:36 Download gff for BS06643.complete
Subject Subject Range Query Range Percent Splice Strand
CoIV-RB 70..616 17..563 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:36 Download gff for BS06643.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19959280..19959691 17..428 100 -> Plus
2L 19959751..19959885 429..563 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:47 Download gff for BS06643.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19959280..19959691 17..428 100 -> Plus
arm_2L 19959751..19959885 429..563 99   Plus

BS06643.pep Sequence

Translation from 16 to 564

> BS06643.pep
MALRLLNSAVLRQLASQLPKSAQVGSVAAVHTLDKIGKREIVGYGWNGTA
CYADRVDYPLPAVRFREPTNEINALRAKEQGDWKKLSTQEIKALYRASFC
QTIAEVQAGSGEWKLHLGVSLLFCAAAIWVAVLMNIFVYDELPVTFDEEH
QKAQLQRIIDLEINPVTGLTSKWDYENKKWKN*

BS06643.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:49
Subject Length Description Subject Range Query Range Score Percent Strand
CoIV-PD 182 CG10664-PD 1..182 1..182 949 100 Plus
CoIV-PC 182 CG10664-PC 1..182 1..182 949 100 Plus
CoIV-PB 182 CG10664-PB 1..182 1..182 949 100 Plus
CoIV-PA 182 CG10664-PA 1..182 1..182 949 100 Plus
CG10396-PB 162 CG10396-PB 17..162 36..181 391 51.4 Plus