Clone Sequence Records
BS06643.3prime Sequence
579 bp (578 high quality bases) assembled on 2005-12-04
> BS06643.3prime
ATGGTCTAGAAAGCTTTTAGTTCTTCCACTTCTTGTTCTCGTAGTCCCAC
TTGGAGGTCAATCCGGTGACGGGGTTGATTTCCAGGTCGATGATGCGCTG
CAGCTGCGCCTTCTGGTGCTCCTCGTCGAAGGTAACGGGCAGCTCATCGT
ACACGAAGATGTTCATCAGTACGGCCACCCAGATGGCGGCGGCGCAGAAG
AGGAGTGAAACGCCCAGGTGGAGCTTCCACTCCCCGGATCCAGCCTGGAC
CTCGGCGATAGTCTGGCAGAAGCTGGCGCGGTACAGGGCCTTGATCTCCT
GGGTGCTGAGCTTCTTCCAGTCTCCCTGCTCCTTGGCGCGCAGAGCGTTG
ATCTCGTTGGTGGGCTCACGGAAGCGCACGGCGGGCAGAGGGTAGTCCAC
GCGATCCGCGTAGCAGGCGGTGCCGTTCCAGCCGTAGCCAACGATCTCCC
GCTTGCCGATCTTGTCCAGTGTGTGGACGGCGGCCACGCTGCCCACCTGG
GCACTCTTGGGCAGCTGAGAGGCCAGCTGGCGGAGCACAGCACTGTTGAG
TAGTCGCAGGGCCATGTCGACTGATAACT
BS06643.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10664-PA | 549 | CG10664-RA | 1..549 | 565..17 | 2720 | 99.8 | Minus |
CG10664-PB | 549 | CG10664-RB | 1..549 | 565..17 | 2720 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:22:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CoIV-RD | 1114 | CG10664-RD | 449..997 | 565..17 | 2730 | 99.8 | Minus |
CoIV-RC | 818 | CG10664-RC | 92..640 | 565..17 | 2730 | 99.8 | Minus |
CoIV-RB | 796 | CG10664-RB | 70..618 | 565..17 | 2730 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:22:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19959280..19959691 | 565..154 | 2060 | 100 | Minus |
2L | 23513712 | 2L | 19959750..19959887 | 154..17 | 675 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:22:10 has no hits.
BS06643.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:47:43 Download gff for
BS06643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10664-PB | 1..549 | 17..565 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:29:03 Download gff for
BS06643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10664-PB | 1..549 | 17..565 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:06:27 Download gff for
BS06643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CoIV-RB | 65..622 | 13..572 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:20:52 Download gff for
BS06643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CoIV-RB | 65..622 | 13..572 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:20:52 Download gff for
BS06643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19959275..19959691 | 154..572 | 99 | -> | Minus |
2L | 19959751..19959891 | 13..153 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:06:27 Download gff for
BS06643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19959275..19959691 | 154..572 | 99 | -> | Minus |
arm_2L | 19959751..19959891 | 13..153 | 97 | | Minus |
BS06643.5prime Sequence
579 bp (578 high quality bases) assembled on 2005-12-04
> BS06643.5prime
GAAGTTATCAGTCGACATGGCCCTGCGACTACTCAACAGTGCTGTGCTCC
GCCAGCTGGCCTCTCAGCTGCCCAAGAGTGCCCAGGTGGGCAGCGTGGCC
GCCGTCCACACACTGGACAAGATCGGCAAGCGGGAGATCGTTGGCTACGG
CTGGAACGGCACCGCCTGCTACGCGGATCGCGTGGACTACCCTCTGCCCG
CCGTGCGCTTCCGTGAGCCCACCAACGAGATCAACGCTCTGCGCGCCAAG
GAGCAGGGAGACTGGAAGAAGCTCAGCACCCAGGAGATCAAGGCCCTGTA
CCGCGCCAGCTTCTGCCAGACTATCGCCGAGGTCCAGGCTGGATCCGGGG
AGTGGAAGCTCCACCTGGGCGTTTCACTCCTCTTCTGCGCCGCCGCCATC
TGGGTGGCCGTACTGATGAACATCTTCGTGTACGATGAGCTGCCCGTTAC
CTTCGACGAGGAGCACCAGAAGGCGCAGCTGCAGCGCATCATCGACCTGG
AAATCAACCCCGTCACCGGATTGACCTCCAAGTGGGACTACGAGAACAAG
AAGTGGAAGAACTAAAAGCTTTCTAGACC
BS06643.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10664-PA | 549 | CG10664-RA | 1..549 | 17..565 | 2720 | 99.8 | Plus |
CG10664-PB | 549 | CG10664-RB | 1..549 | 17..565 | 2720 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:40:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CoIV-RD | 1114 | CG10664-RD | 449..997 | 17..565 | 2730 | 99.8 | Plus |
CoIV-RC | 818 | CG10664-RC | 92..640 | 17..565 | 2730 | 99.8 | Plus |
CoIV-RB | 796 | CG10664-RB | 70..618 | 17..565 | 2730 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:40:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19959280..19959691 | 17..428 | 2060 | 100 | Plus |
2L | 23513712 | 2L | 19959750..19959887 | 428..565 | 675 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-09 22:40:05 has no hits.
BS06643.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:47:44 Download gff for
BS06643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10664-PB | 1..549 | 17..565 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:29:05 Download gff for
BS06643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10664-PB | 1..549 | 17..565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:27:06 Download gff for
BS06643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CoIV-RB | 65..622 | 10..569 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:47:20 Download gff for
BS06643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CoIV-RB | 65..622 | 10..569 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:47:20 Download gff for
BS06643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19959275..19959691 | 10..428 | 99 | -> | Plus |
2L | 19959751..19959891 | 429..569 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:27:06 Download gff for
BS06643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19959275..19959691 | 10..428 | 99 | -> | Plus |
arm_2L | 19959751..19959891 | 429..569 | 97 | | Plus |
BS06643.complete Sequence
581 bp (581 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635575
> BS06643.complete
GAAGTTATCAGTCGACATGGCCCTGCGACTACTCAACAGTGCTGTGCTCC
GCCAGCTGGCCTCTCAGCTGCCCAAGAGTGCCCAGGTGGGCAGCGTGGCC
GCCGTCCACACACTGGACAAGATCGGCAAGCGGGAGATCGTTGGCTACGG
CTGGAACGGCACCGCCTGCTACGCGGATCGCGTGGACTACCCTCTGCCCG
CCGTGCGCTTCCGTGAGCCCACCAACGAGATCAACGCTCTGCGCGCCAAG
GAGCAGGGAGACTGGAAGAAGCTCAGCACCCAGGAGATCAAGGCCCTGTA
CCGCGCCAGCTTCTGCCAGACTATCGCCGAGGTCCAGGCTGGATCCGGGG
AGTGGAAGCTCCACCTGGGCGTTTCACTCCTCTTCTGCGCCGCCGCCATC
TGGGTGGCCGTACTGATGAACATCTTCGTGTACGATGAGCTGCCCGTTAC
CTTCGACGAGGAGCACCAGAAGGCGCAGCTGCAGCGCATCATCGACCTGG
AAATCAACCCCGTCACCGGATTGACCTCCAAGTGGGACTACGAGAACAAG
AAGTGGAAGAACTAAAAGCTTTCTAGACCAT
BS06643.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:01:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CoIV-RD | 549 | CG10664-PD | 1..549 | 17..565 | 2730 | 99.8 | Plus |
CoIV-RC | 549 | CG10664-PC | 1..549 | 17..565 | 2730 | 99.8 | Plus |
CoIV-RB | 549 | CG10664-PB | 1..549 | 17..565 | 2730 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:01:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CoIV-RD | 1114 | CG10664-RD | 449..997 | 17..565 | 2730 | 99.8 | Plus |
CoIV-RC | 818 | CG10664-RC | 92..640 | 17..565 | 2730 | 99.8 | Plus |
CoIV-RB | 796 | CG10664-RB | 70..618 | 17..565 | 2730 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:01:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19959280..19959691 | 17..428 | 2060 | 100 | Plus |
2L | 23513712 | 2L | 19959750..19959887 | 428..565 | 675 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:01:37 has no hits.
BS06643.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:25 Download gff for
BS06643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10664-RB | 1..549 | 17..565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:05 Download gff for
BS06643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10664-RA | 62..619 | 10..569 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:47 Download gff for
BS06643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CoIV-RB | 70..616 | 17..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:25 Download gff for
BS06643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10664-RB | 41..598 | 10..569 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:36 Download gff for
BS06643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CoIV-RB | 70..616 | 17..563 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:36 Download gff for
BS06643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19959280..19959691 | 17..428 | 100 | -> | Plus |
2L | 19959751..19959885 | 429..563 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:47 Download gff for
BS06643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19959280..19959691 | 17..428 | 100 | -> | Plus |
arm_2L | 19959751..19959885 | 429..563 | 99 | | Plus |
BS06643.pep Sequence
Translation from 16 to 564
> BS06643.pep
MALRLLNSAVLRQLASQLPKSAQVGSVAAVHTLDKIGKREIVGYGWNGTA
CYADRVDYPLPAVRFREPTNEINALRAKEQGDWKKLSTQEIKALYRASFC
QTIAEVQAGSGEWKLHLGVSLLFCAAAIWVAVLMNIFVYDELPVTFDEEH
QKAQLQRIIDLEINPVTGLTSKWDYENKKWKN*
BS06643.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CoIV-PD | 182 | CG10664-PD | 1..182 | 1..182 | 949 | 100 | Plus |
CoIV-PC | 182 | CG10664-PC | 1..182 | 1..182 | 949 | 100 | Plus |
CoIV-PB | 182 | CG10664-PB | 1..182 | 1..182 | 949 | 100 | Plus |
CoIV-PA | 182 | CG10664-PA | 1..182 | 1..182 | 949 | 100 | Plus |
CG10396-PB | 162 | CG10396-PB | 17..162 | 36..181 | 391 | 51.4 | Plus |